Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001154

Physical Location & Seq

Genomic Coordinates Forward (+)

42458981 .. 42459913

Gene Structure 933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G021230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGTTGTTTGTGAAAAACAAGTTTATGACGATTGGGTTAAGGTTCACAAGGAAGCCAAAGGACTAAGACTTAAACCATTCATTCATTATGATAGTTTGGTGGAAGCTTTTGGGAGAGATAGAGCCAATGGGTTAGGAGCTGAAGGACCTGCAGAAGTTGATGAAGATGTGAATAATGATAATGAATTTGTTGATCTTGAAGGACCTGCAAAAGCTGAAAATATTGTTCCTACACCTGCTACTCGTACAACTTCCTCTGCTTCTAATTCAACTCGGACTAGAAAGCGAGCAAGGGATGCTTATGCTCAATGCTTGGGAGACATGGCTAGCACACTTCGCTCCTTTGTGGATGTGACCAAGACACACTTGGAGACTATGAAAGAAGTACTTTTGAATGAACATGCAGCATCTACAAAAAGAGGTAAACTTGTCGAAGAGCTTATGAAAATTGAAGGTTTGAATGATTATGATGTGCTTGAGGCTGCTGCTATAATTATTGGCGATGACTCCAAAATTGAGCTCTTGTTTAGCTTACCTGACAATTTGAAGAGCCAATGGATTTACAAGCTTCTGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

192

Amino Acids

21.43

Weight (kDa)

5.1

Isoelectric Point (pI)

36.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001154)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g08194
prunus_persica	Prupe.4G257700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0343671 RchiOBHm_Chr5g0072391 RchiOBHm_Chr6g0274461 RchiOBHm_Chr6g0284621
rosa_laevigata	RLG00000001201 RLG00000008793 RLG00000013285 RLG00000013580 RLG00000015412 RLG00000020159 RLG00000022735 RLG00000029912 RLG00000030782 RLG00000032954
rosa_multiflora	Rmu_sc0000233.1_g000006 Rmu_sc0001240.1_g000006 Rmu_sc0002352.1_g000014 Rmu_sc0003882.1_g000036 Rmu_sc0004016.1_g000017 Rmu_sc0004698.1_g000002 Rmu_sc0006651.1_g000003 Rmu_sc0009984.1_g000002 Rmu_sc0010945.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083960 Rroxscaffold_2G00137540 Rroxscaffold_2G00137550 Rroxscaffold_3G00226540 Rroxscaffold_3G00276350 Rroxscaffold_7G00175350
rosa_rugosa	Rorug02G0052000 Rorug04G0314300 Rorug05G0057300 Rorug06G0033500
rosa_samantha	Rh1CG381500 Rh2DG003400 Rh3BG333400 Rh4AG123000 Rh4AG311600 Rh4AG339700 Rh4CG303900 Rh4CG334100 Rh5AG318400 Rh5BG324000 Rh6AG407700 Rh6BG340400 Rh7AG126300 Rh7CG042400 Rh7CG042500 Rh7CG154400 Rh7CG166300 Rh7CG315500
rosa_wichuraiana	Rw5G010820 Rw5G026590 Rw6G003280 Rw6G021230 Rw7G013220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	244
Acc36I	ACCTGC	3 cut(s)	157, 214, 244
AcsI	RAATTY	1 cut(s)	185
AcuI	CTGAAG	1 cut(s)	162
AfaI	GTAC	2 cut(s)	247, 387
AgsI	TTSAA	6 cut(s)	200, 270, 394, 452, 460, 547
AluBI	AGCT	7 cut(s)	107, 140, 215, 439, 520, 531, 568
AluI	AGCT	7 cut(s)	107, 140, 215, 439, 520, 531, 568
Alw21I	GWGCWC	1 cut(s)	522
Alw26I	GTCTC	2 cut(s)	312, 365
ApeKI	GCWGC	3 cut(s)	404, 482, 485
ApoI	RAATTY	1 cut(s)	185
AspS9I	GGNCC	2 cut(s)	146, 203
AsuNHI	GCTAGC	1 cut(s)	326
AvaII	GGWCC	2 cut(s)	146, 203
BanII	GRGCYC	1 cut(s)	522
Bbv12I	GWGCWC	1 cut(s)	522
BbvI	GCAGC	3 cut(s)	416, 469, 472
BcoDI	GTCTC	2 cut(s)	312, 365
BfaI	CTAG	3 cut(s)	279, 327, 577
BfmI	CTRYAG	1 cut(s)	150
BfuAI	ACCTGC	3 cut(s)	157, 214, 244
BisI	GCNGC	3 cut(s)	405, 483, 486
BlsI	GCNGC	3 cut(s)	406, 484, 487
BmcAI	AGTACT	1 cut(s)	387
Bme18I	GGWCC	2 cut(s)	146, 203
BmgT120I	GGNCC	2 cut(s)	146, 203
BmsI	GCATC	2 cut(s)	286, 416
BmtI	GCTAGC	1 cut(s)	330
BpuEI	CTTGAG	1 cut(s)	497
BseGI	GGATG	2 cut(s)	301, 355
BseXI	GCAGC	3 cut(s)	416, 469, 472
BsiHKAI	GWGCWC	1 cut(s)	522
BsmAI	GTCTC	2 cut(s)	312, 365
Bsp1286I	GDGCHC	1 cut(s)	522
Bsp143I	GATC	1 cut(s)	193
BspMAI	CTGCAG	1 cut(s)	154
BspMI	ACCTGC	3 cut(s)	157, 214, 244
BspOI	GCTAGC	1 cut(s)	330
BspQI	GCTCTTC	2 cut(s)	429, 542
BssMI	GATC	1 cut(s)	193
Bst6I	CTCTTC	2 cut(s)	429, 542
BstAPI	GCANNNNNTGC	1 cut(s)	296
BstC8I	GCNNGC	2 cut(s)	288, 328
BstDEI	CTNAG	1 cut(s)	65
BstF5I	GGATG	2 cut(s)	301, 355
BstKTI	GATC	1 cut(s)	196
BstMAI	GTCTC	2 cut(s)	312, 365
BstMBI	GATC	1 cut(s)	193
BstMWI	GCNNNNNNNGC	2 cut(s)	296, 336
BstNSI	RCATGY	1 cut(s)	404
BstSFI	CTRYAG	1 cut(s)	150
BstV1I	GCAGC	3 cut(s)	416, 469, 472
BtgZI	GCGATG	1 cut(s)	516
BtsCI	GGATG	2 cut(s)	301, 355
BveI	ACCTGC	3 cut(s)	157, 214, 244
Cac8I	GCNNGC	2 cut(s)	288, 328
Cfr13I	GGNCC	2 cut(s)	146, 203
Csp6I	GTAC	2 cut(s)	246, 386
CviAII	CATG	2 cut(s)	322, 401
CviQI	GTAC	2 cut(s)	246, 386
DdeI	CTNAG	1 cut(s)	65
DpnI	GATC	1 cut(s)	195
DpnII	GATC	1 cut(s)	193
Eam1104I	CTCTTC	2 cut(s)	429, 542
EarI	CTCTTC	2 cut(s)	429, 542
Ecl136II	GAGCTC	1 cut(s)	520
Eco24I	GRGCYC	1 cut(s)	522
Eco47I	GGWCC	2 cut(s)	146, 203
Eco53kI	GAGCTC	1 cut(s)	520
Eco57I	CTGAAG	1 cut(s)	162
EcoICRI	GAGCTC	1 cut(s)	520
EcoO109I	RGGNCCY	2 cut(s)	146, 203
EcoT38I	GRGCYC	1 cut(s)	522
FaeI	CATG	2 cut(s)	325, 404
FaiI	YATR	9 cut(s)	27, 90, 303, 323, 377, 402, 443, 468, 491
FalI	AAGNNNNNCTT	6 cut(s)	283, 315, 350, 382, 372, 404
FatI	CATG	2 cut(s)	321, 400
Fnu4HI	GCNGC	3 cut(s)	405, 483, 486
FokI	GGATG	2 cut(s)	308, 362
FriOI	GRGCYC	1 cut(s)	522
Fsp4HI	GCNGC	3 cut(s)	405, 483, 486
FspBI	CTAG	3 cut(s)	279, 327, 577
GluI	GCNGC	3 cut(s)	405, 483, 486
Hin1II	CATG	2 cut(s)	325, 404
HindIII	AAGCTT	2 cut(s)	105, 566
HinfI	GANTC	1 cut(s)	506
Hpy166II	GTNNAC	2 cut(s)	46, 425
Hpy188I	TCNGA	2 cut(s)	276, 573
Hpy188III	TCNNGA	1 cut(s)	197
Hpy8I	GTNNAC	2 cut(s)	46, 425
HpyAV	CCTTC	3 cut(s)	137, 194, 446
HpyCH4V	TGCA	3 cut(s)	152, 209, 404
HpyF10VI	GCNNNNNNNGC	2 cut(s)	296, 336
HpyF3I	CTNAG	1 cut(s)	65
Hsp92II	CATG	2 cut(s)	325, 404
Kzo9I	GATC	1 cut(s)	193
LguI	GCTCTTC	2 cut(s)	429, 542
LmnI	GCTCC	2 cut(s)	137, 344
LpnPI	CCDG	4 cut(s)	162, 219, 249, 549
Lsp1109I	GCAGC	3 cut(s)	416, 469, 472
LweI	GCATC	2 cut(s)	286, 416
MaeI	CTAG	3 cut(s)	279, 327, 577
MaeIII	GTNAC	1 cut(s)	352
MalI	GATC	1 cut(s)	195
MboI	GATC	1 cut(s)	193
MboII	GAAGA	3 cut(s)	176, 446, 559
MhlI	GDGCHC	1 cut(s)	522
MluCI	AATT	6 cut(s)	185, 265, 447, 492, 513, 541
MlyI	GAGTC	1 cut(s)	500
MnlI	CCTC	3 cut(s)	265, 413, 472
MseI	TTAA	2 cut(s)	39, 72
MwoI	GCNNNNNNNGC	2 cut(s)	296, 336
NdeII	GATC	1 cut(s)	193
NheI	GCTAGC	1 cut(s)	326
NlaIII	CATG	2 cut(s)	325, 404
NmuCI	GTSAC	1 cut(s)	352
NspI	RCATGY	1 cut(s)	404
PaqCI	CACCTGC	1 cut(s)	244
PciSI	GCTCTTC	2 cut(s)	429, 542
PkrI	GCNGC	3 cut(s)	406, 484, 487
PleI	GAGTC	1 cut(s)	500
PpsI	GAGTC	1 cut(s)	500
PpuMI	RGGWCCY	2 cut(s)	146, 203
Psp124BI	GAGCTC	1 cut(s)	522
Psp5II	RGGWCCY	2 cut(s)	146, 203
PspPI	GGNCC	2 cut(s)	146, 203
PspPPI	RGGWCCY	2 cut(s)	146, 203
PstI	CTGCAG	1 cut(s)	154
RsaI	GTAC	2 cut(s)	247, 387
RsaNI	GTAC	2 cut(s)	246, 386
SacI	GAGCTC	1 cut(s)	522
SapI	GCTCTTC	2 cut(s)	429, 542
SaqAI	TTAA	2 cut(s)	39, 72
SatI	GCNGC	3 cut(s)	405, 483, 486
Sau3AI	GATC	1 cut(s)	193
Sau96I	GGNCC	2 cut(s)	146, 203
ScaI	AGTACT	1 cut(s)	387
SchI	GAGTC	1 cut(s)	500
SduI	GDGCHC	1 cut(s)	522
SfaNI	GCATC	2 cut(s)	286, 416
SfcI	CTRYAG	1 cut(s)	150
SinI	GGWCC	2 cut(s)	146, 203
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
Sse9I	AATT	6 cut(s)	185, 265, 447, 492, 513, 541
SspI	AATATT	1 cut(s)	223
SspMI	CTAG	3 cut(s)	279, 327, 577
SstI	GAGCTC	1 cut(s)	522
TaqI	TCGA	1 cut(s)	432
TasI	AATT	6 cut(s)	185, 265, 447, 492, 513, 541
TatI	WGTACW	1 cut(s)	385
Tru1I	TTAA	2 cut(s)	39, 72
Tru9I	TTAA	2 cut(s)	39, 72
TseFI	GTSAC	1 cut(s)	352
TseI	GCWGC	3 cut(s)	404, 482, 485
Tsp45I	GTSAC	1 cut(s)	352
TspDTI	ATGAA	7 cut(s)	70, 74, 177, 198, 392, 411, 458
VpaK11BI	GGWCC	2 cut(s)	146, 203
XapI	RAATTY	1 cut(s)	185
XceI	RCATGY	1 cut(s)	404
XcmI	CCANNNNNNNNNTGG	1 cut(s)	364
XspI	CTAG	3 cut(s)	279, 327, 577
ZrmI	AGTACT	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.