Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009984.1

Orthogroup ID

OG0001154

Physical Location & Seq

Genomic Coordinates Reverse (-)

4295 .. 4804

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009984.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atgaaaccattcattcattatgatagcttgatagaagcctttggcagagaccgtgcaaatggattaggagctgaaggaccagctgaagcaaatgaagatctcaataatgagaataactatgctgacattgaagaaaatggtttggatgaaatcacagttccttcatctgttacccgtaattctgcaaacccaccttcagctcgaactaggaagcgagcacgagatgcttattctcaatgtttgggagacatggctagcacattacgctcctttgtggacgtgaccaaggcacacttggagacaatgcagggagtactcatgaatgagcatgtaacatctgaaagaagaggaaagcttgtggaggagcttatgaaaatagaaggcataaatgactatgatgtaatagaagctgctgctgcaattattggtgatgactccaaaattgacctcttgttcagtttgccagacaacctcaaaagtcaatggattcataaacttcttggccattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

169

Amino Acids

18.73

Weight (kDa)

4.84

Isoelectric Point (pI)

50.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001154)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g08194
prunus_persica	Prupe.4G257700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0343671 RchiOBHm_Chr5g0072391 RchiOBHm_Chr6g0274461 RchiOBHm_Chr6g0284621
rosa_laevigata	RLG00000001201 RLG00000008793 RLG00000013285 RLG00000013580 RLG00000015412 RLG00000020159 RLG00000022735 RLG00000029912 RLG00000030782 RLG00000032954
rosa_multiflora	Rmu_sc0000233.1_g000006 Rmu_sc0001240.1_g000006 Rmu_sc0002352.1_g000014 Rmu_sc0003882.1_g000036 Rmu_sc0004016.1_g000017 Rmu_sc0004698.1_g000002 Rmu_sc0006651.1_g000003 Rmu_sc0009984.1_g000002 Rmu_sc0010945.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083960 Rroxscaffold_2G00137540 Rroxscaffold_2G00137550 Rroxscaffold_3G00226540 Rroxscaffold_3G00276350 Rroxscaffold_7G00175350
rosa_rugosa	Rorug02G0052000 Rorug04G0314300 Rorug05G0057300 Rorug06G0033500
rosa_samantha	Rh1CG381500 Rh2DG003400 Rh3BG333400 Rh4AG123000 Rh4AG311600 Rh4AG339700 Rh4CG303900 Rh4CG334100 Rh5AG318400 Rh5BG324000 Rh6AG407700 Rh6BG340400 Rh7AG126300 Rh7CG042400 Rh7CG042500 Rh7CG154400 Rh7CG166300 Rh7CG315500
rosa_wichuraiana	Rw5G010820 Rw5G026590 Rw6G003280 Rw6G021230 Rw7G013220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	502
AcuI	CTGAAG	3 cut(s)	93, 105, 180
AfaI	GTAC	1 cut(s)	315
AgsI	TTSAA	1 cut(s)	131
AjiI	CACGTC	1 cut(s)	280
AluBI	AGCT	7 cut(s)	27, 71, 83, 200, 355, 367, 410
AluI	AGCT	7 cut(s)	27, 71, 83, 200, 355, 367, 410
Alw21I	GWGCWC	1 cut(s)	220
Alw26I	GTCTC	3 cut(s)	42, 240, 293
AoxI	GGCC	1 cut(s)	502
ApeKI	GCWGC	3 cut(s)	410, 413, 416
Asp700I	GAANNNNTTC	1 cut(s)	8
AspS9I	GGNCC	1 cut(s)	77
AsuHPI	GGTGA	1 cut(s)	440
AsuNHI	GCTAGC	1 cut(s)	254
AvaII	GGWCC	1 cut(s)	77
BalI	TGGCCA	1 cut(s)	504
BauI	CACGAG	1 cut(s)	219
Bbv12I	GWGCWC	1 cut(s)	220
BbvI	GCAGC	3 cut(s)	397, 400, 403
BcoDI	GTCTC	3 cut(s)	42, 240, 293
BfaI	CTAG	2 cut(s)	207, 255
BglII	AGATCT	1 cut(s)	97
BisI	GCNGC	3 cut(s)	411, 414, 417
BlsI	GCNGC	3 cut(s)	412, 415, 418
BmcAI	AGTACT	1 cut(s)	315
Bme18I	GGWCC	1 cut(s)	77
BmgBI	CACGTC	1 cut(s)	280
BmgT120I	GGNCC	1 cut(s)	77
BmsI	GCATC	1 cut(s)	214
BmtI	GCTAGC	1 cut(s)	258
BsaI	GGTCTC	1 cut(s)	42
BsaJI	CCNNGG	1 cut(s)	285
BseDI	CCNNGG	1 cut(s)	285
BseGI	GGATG	1 cut(s)	151
BseRI	GAGGAG	1 cut(s)	377
BseXI	GCAGC	3 cut(s)	397, 400, 403
BshFI	GGCC	1 cut(s)	504
BsiHKAI	GWGCWC	1 cut(s)	220
BsmAI	GTCTC	3 cut(s)	42, 240, 293
BsnI	GGCC	1 cut(s)	504
Bso31I	GGTCTC	1 cut(s)	42
Bsp1286I	GDGCHC	1 cut(s)	220
Bsp143I	GATC	1 cut(s)	97
BspANI	GGCC	1 cut(s)	504
BspHI	TCATGA	1 cut(s)	318
BspOI	GCTAGC	1 cut(s)	258
BspTNI	GGTCTC	1 cut(s)	42
BssECI	CCNNGG	1 cut(s)	285
BssMI	GATC	1 cut(s)	97
BssSI	CACGAG	1 cut(s)	219
BssT1I	CCWWGG	1 cut(s)	285
Bst2BI	CACGAG	1 cut(s)	219
Bst4CI	ACNGT	2 cut(s)	53, 157
Bst6I	CTCTTC	1 cut(s)	340
BstAPI	GCANNNNNTGC	1 cut(s)	224
BstC8I	GCNNGC	2 cut(s)	216, 256
BstF5I	GGATG	1 cut(s)	151
BstKTI	GATC	1 cut(s)	100
BstMAI	GTCTC	3 cut(s)	42, 240, 293
BstMBI	GATC	1 cut(s)	97
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 264, 416
BstNSI	RCATGY	1 cut(s)	332
BstV1I	GCAGC	3 cut(s)	397, 400, 403
BstX2I	RGATCY	1 cut(s)	97
BstYI	RGATCY	1 cut(s)	97
BsuRI	GGCC	1 cut(s)	504
BtrI	CACGTC	1 cut(s)	280
BtsCI	GGATG	1 cut(s)	151
Cac8I	GCNNGC	2 cut(s)	216, 256
CciI	TCATGA	1 cut(s)	318
Cfr13I	GGNCC	1 cut(s)	77
Csp6I	GTAC	1 cut(s)	314
CviAII	CATG	3 cut(s)	250, 319, 329
CviQI	GTAC	1 cut(s)	314
DpnI	GATC	1 cut(s)	99
DpnII	GATC	1 cut(s)	97
EaeI	YGGCCR	1 cut(s)	502
Eam1104I	CTCTTC	1 cut(s)	340
EarI	CTCTTC	1 cut(s)	340
Eco130I	CCWWGG	1 cut(s)	285
Eco31I	GGTCTC	1 cut(s)	42
Eco47I	GGWCC	1 cut(s)	77
Eco57I	CTGAAG	3 cut(s)	93, 105, 180
EcoT14I	CCWWGG	1 cut(s)	285
ErhI	CCWWGG	1 cut(s)	285
FaeI	CATG	3 cut(s)	253, 322, 332
FaiI	YATR	9 cut(s)	21, 120, 251, 320, 330, 371, 386, 396, 492
FalI	AAGNNNNNCTT	2 cut(s)	278, 310
FatI	CATG	3 cut(s)	249, 318, 328
Fnu4HI	GCNGC	3 cut(s)	411, 414, 417
FokI	GGATG	1 cut(s)	158
Fsp4HI	GCNGC	3 cut(s)	411, 414, 417
FspBI	CTAG	2 cut(s)	207, 255
GluI	GCNGC	3 cut(s)	411, 414, 417
HaeIII	GGCC	1 cut(s)	504
Hin1II	CATG	3 cut(s)	253, 322, 332
HindIII	AAGCTT	1 cut(s)	353
HinfI	GANTC	2 cut(s)	434, 487
HphI	GGTGA	1 cut(s)	440
Hpy166II	GTNNAC	1 cut(s)	277
Hpy188I	TCNGA	1 cut(s)	340
Hpy188III	TCNNGA	1 cut(s)	319
Hpy8I	GTNNAC	1 cut(s)	277
HpyAV	CCTTC	4 cut(s)	68, 171, 204, 374
HpyCH4III	ACNGT	2 cut(s)	53, 157
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	4 cut(s)	56, 185, 307, 419
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 264, 416
HpySE526I	ACGT	1 cut(s)	279
Hsp92II	CATG	3 cut(s)	253, 322, 332
Kzo9I	GATC	1 cut(s)	97
LmnI	GCTCC	3 cut(s)	68, 272, 364
LpnPI	CCDG	3 cut(s)	93, 293, 477
Lsp1109I	GCAGC	3 cut(s)	397, 400, 403
LweI	GCATC	1 cut(s)	214
MaeI	CTAG	2 cut(s)	207, 255
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	3 cut(s)	169, 280, 331
MalI	GATC	1 cut(s)	99
MboI	GATC	1 cut(s)	97
MboII	GAAGA	3 cut(s)	107, 143, 357
MflI	RGATCY	1 cut(s)	97
MhlI	GDGCHC	1 cut(s)	220
MlsI	TGGCCA	1 cut(s)	504
MluCI	AATT	3 cut(s)	178, 420, 441
MluNI	TGGCCA	1 cut(s)	504
MlyI	GAGTC	1 cut(s)	428
MnlI	CCTC	4 cut(s)	341, 355, 458, 482
Mox20I	TGGCCA	1 cut(s)	504
MroXI	GAANNNNTTC	1 cut(s)	8
MscI	TGGCCA	1 cut(s)	504
Msp20I	TGGCCA	1 cut(s)	504
MspA1I	CMGCKG	1 cut(s)	83
MwoI	GCNNNNNNNGC	3 cut(s)	224, 264, 416
NdeII	GATC	1 cut(s)	97
NheI	GCTAGC	1 cut(s)	254
NlaIII	CATG	3 cut(s)	253, 322, 332
NmuCI	GTSAC	1 cut(s)	280
NspI	RCATGY	1 cut(s)	332
PagI	TCATGA	1 cut(s)	318
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	1 cut(s)	487
PkrI	GCNGC	3 cut(s)	412, 415, 418
PleI	GAGTC	1 cut(s)	428
PpsI	GAGTC	1 cut(s)	428
PspPI	GGNCC	1 cut(s)	77
PsuI	RGATCY	1 cut(s)	97
PvuII	CAGCTG	1 cut(s)	83
RsaI	GTAC	1 cut(s)	315
RsaNI	GTAC	1 cut(s)	314
SatI	GCNGC	3 cut(s)	411, 414, 417
Sau3AI	GATC	1 cut(s)	97
Sau96I	GGNCC	1 cut(s)	77
ScaI	AGTACT	1 cut(s)	315
SchI	GAGTC	1 cut(s)	428
SduI	GDGCHC	1 cut(s)	220
SfaNI	GCATC	1 cut(s)	214
SinI	GGWCC	1 cut(s)	77
Sse9I	AATT	3 cut(s)	178, 420, 441
SspMI	CTAG	2 cut(s)	207, 255
StyI	CCWWGG	1 cut(s)	285
TaaI	ACNGT	2 cut(s)	53, 157
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	1 cut(s)	202
TasI	AATT	3 cut(s)	178, 420, 441
TatI	WGTACW	1 cut(s)	313
TfiI	GAWTC	1 cut(s)	487
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	3 cut(s)	410, 413, 416
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	8 cut(s)	5, 17, 108, 153, 162, 335, 386, 479
VpaK11BI	GGWCC	1 cut(s)	77
XceI	RCATGY	1 cut(s)	332
XcmI	CCANNNNNNNNNTGG	1 cut(s)	292
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	2 cut(s)	207, 255
ZrmI	AGTACT	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.