Rmu_sc0004698.1_g000002
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004698.1
OG0001154
Physical Location & Seq
Reverse (-)
5903 .. 11389
5487 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004698.1_g000002.1.cds

Sequence Viewer

Length: 1848 bp
atgaaaaccgaaccttcgacggcgaaatggggactggaggtggccggaatcgccggaaatcgtcaaaatcttcaaactgcagccgaaggaggttttgcttcgatccgtggttttccggctaaatcgtccaaaacccaggttactagggtgatcggagggaggaggcactcctctgatgaccggtggcacgccggttggtggccggaatcgccggaaatcggggggagaaaggaaagggtcgaaccggagaagagagagctcgggggggaggagagagaaaggggaagggtgggtttccggaaatggaaacctaccctagatgggacatatattagagtacatgtgccagaagtggacaagcctaggtaccgaagtaggaagaatgaaattgctacaaacgtcttgggagtatgctcccaagatatgcaattcatttatgtattaccgggttgggagggttcggctgcagattcacgagtactacgtcatgccattagtaggagacatgggttccgagtcccccatggatattactaccttgttgatgctgggtatccaaatggggaggggtttcttgctccatatagaggccaaagatatcatttaaatgattggagacaaggataccaacctaccacccctgaagaattttttaacatgaagcattcttctgctaggaatgtgatagagagatgttttgggttacttaagatgcgttgggcaattctaaggagcccttcattttttccagtgaagacacagtgccaaattgttatagcatgttgcttgcttcgcaaccttataagaagggaagtggcaattgatcccttagaaaatcaactgaatgccattatggataaccaagatgatgatggtgatgatataatcaattttatcgactcatcagaacaatggaatgattggagaagagagatggatttgcaagcaaactcaagatcctcaactagtagaagtggaagaaataaagagaagcaaccatcacacacctggacccctattgaagatgtagctctagttgaggctttaactgaactttgtgtttctgggacctggaaggttgacaatggattcaaggcaggatatttgggacaactagaaaaaattatagagcaaaagctaccaaattgtggattaaaggcgaacccccacattgagtctcgtgttaagacactaaagaaacaaacactagccatctctgacatgattgctaactcaagtggcttctcatgggaccatgaaaataaaatggttgtttgtgaaaaacaagtgtatgacgattgggttaaggttcacaaggaagccaaaggactaagacttaaaccattcattcattatgatagtttggtggaagcttttgggagagatagagccaatgggttaggagctgaaggacctgctgaagcggatgaagatttgaataatgataatgaatttgttgatctcgaaggagatggtttgcctgaaaatgttgttcctacacctgctactcgtacaacttcttccgcttctaattcaactcggactagaaagcgagcaagggacacttatgcccaatgcttgggagacatgtctagcacacttcgctcctttgtggatgtgaccaagacacacttggagactatgaaagaagtacttttgaatgaccatgcaacatctacaaaaagaggtaaacttgtcgaagagcttatgaaaattgaaggtttgaatgattatgatgtgcttgaggctgctgctactattattggcgatgactccaaaattgagctcttgttcagcttacctgacaatttaaagagccaatggatttacaagcttcttaaccactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

615

Amino Acids

69.75

Weight (kDa)

6.98

Isoelectric Point (pI)

49.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 803
AarI CACCTGC 1 cut(s) 1510
Acc36I ACCTGC 2 cut(s) 1423, 1510
Acc65I GGTACC 1 cut(s) 366
AccB1I GGYRCC 1 cut(s) 366
AccB7I CCANNNNNTGG 2 cut(s) 1148, 1579
AccIII TCCGGA 1 cut(s) 297
AciI CCGC 2 cut(s) 1424, 1524
AclWI GGATC 3 cut(s) 97, 818, 951
AcoI YGGCCR 2 cut(s) 42, 200
AcsI RAATTY 2 cut(s) 647, 1451
AcuI CTGAAG 3 cut(s) 663, 1428, 1440
AfaI GTAC 5 cut(s) 339, 368, 480, 1513, 1653
AfiI CCNNNNNNNGG 7 cut(s) 198, 218, 321, 498, 587, 1148, 1579
AflII CTTAAG 1 cut(s) 707
AflIII ACRYGT 2 cut(s) 340, 1587
AgeI ACCGGT 1 cut(s) 180
AgsI TTSAA 8 cut(s) 74, 1022, 1093, 1438, 1536, 1660, 1718, 1726
AhlI ACTAGT 1 cut(s) 965
AjnI CCWGG 3 cut(s) 135, 1007, 1070
AluBI AGCT 9 cut(s) 259, 1031, 1138, 1373, 1406, 1705, 1786, 1797, 1834
AluI AGCT 9 cut(s) 259, 1031, 1138, 1373, 1406, 1705, 1786, 1797, 1834
Alw21I GWGCWC 2 cut(s) 261, 1788
Alw26I GTCTC 5 cut(s) 496, 610, 1182, 1578, 1631
AlwI GGATC 3 cut(s) 97, 818, 951
Ama87I CYCGRG 1 cut(s) 260
Aor13HI TCCGGA 1 cut(s) 297
AoxI GGCC 3 cut(s) 42, 200, 589
ApeKI GCWGC 4 cut(s) 80, 464, 1748, 1751
ApoI RAATTY 2 cut(s) 647, 1451
AsiGI ACCGGT 1 cut(s) 180
Asp718I GGTACC 1 cut(s) 366
AspA2I CCTAGG 1 cut(s) 362
AspS9I GGNCC 4 cut(s) 1011, 1068, 1252, 1412
AsuC2I CCSGG 1 cut(s) 447
AsuHPI GGTGA 2 cut(s) 160, 887
AvaI CYCGRG 1 cut(s) 260
AvaII GGWCC 4 cut(s) 1011, 1068, 1252, 1412
AvrII CCTAGG 1 cut(s) 362
BaeI ACNNNNGTAYC 2 cut(s) 358, 391
BanI GGYRCC 1 cut(s) 366
BanII GRGCYC 3 cut(s) 261, 737, 1788
BarI GAAGNNNNNNTAC 2 cut(s) 1504, 1536
BauI CACGAG 2 cut(s) 474, 1179
BbsI GAAGAC 1 cut(s) 761
Bbv12I GWGCWC 2 cut(s) 261, 1788
BbvI GCAGC 4 cut(s) 92, 451, 1735, 1738
BccI CCATC 6 cut(s) 314, 866, 928, 1006, 1220, 1466
BceAI ACGGC 1 cut(s) 36
BciT130I CCWGG 3 cut(s) 137, 1009, 1072
BciVI GTATCC 2 cut(s) 564, 617
BcnI CCSGG 1 cut(s) 447
BcoDI GTCTC 5 cut(s) 496, 610, 1182, 1578, 1631
BcuI ACTAGT 1 cut(s) 965
BfmI CTRYAG 2 cut(s) 78, 465
BfrI CTTAAG 1 cut(s) 707
BfuAI ACCTGC 2 cut(s) 1423, 1510
BfuI GTATCC 2 cut(s) 564, 617
BisI GCNGC 4 cut(s) 81, 465, 1749, 1752
BlnI CCTAGG 1 cut(s) 362
BlsI GCNGC 4 cut(s) 82, 466, 1750, 1753
BmcAI AGTACT 2 cut(s) 480, 1653
Bme1390I CCNGG 4 cut(s) 137, 447, 1009, 1072
Bme18I GGWCC 4 cut(s) 1011, 1068, 1252, 1412
BmeT110I CYCGRG 1 cut(s) 260
BmgT120I GGNCC 4 cut(s) 1011, 1068, 1252, 1412
BmiI GGNNCC 6 cut(s) 368, 512, 734, 1013, 1069, 1253
BmrFI CCNGG 4 cut(s) 137, 447, 1009, 1072
BmsI GCATC 2 cut(s) 535, 702
BpiI GAAGAC 1 cut(s) 761
BpmI CTGGAG 1 cut(s) 56
BpuEI CTTGAG 3 cut(s) 937, 1219, 1763
BpuMI CCSGG 1 cut(s) 447
BsaJI CCNNGG 4 cut(s) 106, 135, 362, 523
BsaWI WCCGGW 3 cut(s) 180, 244, 297
Bsc4I CCNNNNNNNGG 7 cut(s) 198, 218, 321, 498, 587, 1148, 1579
Bse118I RCCGGY 2 cut(s) 180, 191
Bse1I ACTGG 2 cut(s) 39, 749
BseAI TCCGGA 1 cut(s) 297
BseBI CCWGG 3 cut(s) 137, 1009, 1072
BseDI CCNNGG 4 cut(s) 106, 135, 362, 523
BseGI GGATG 2 cut(s) 1432, 1621
BseLI CCNNNNNNNGG 7 cut(s) 198, 218, 321, 498, 587, 1148, 1579
BseNI ACTGG 2 cut(s) 39, 749
BseRI GAGGAG 3 cut(s) 160, 175, 284
BseXI GCAGC 4 cut(s) 92, 451, 1735, 1738
BseYI CCCAGC 1 cut(s) 548
BshFI GGCC 3 cut(s) 44, 202, 591
BshNI GGYRCC 1 cut(s) 366
BshTI ACCGGT 1 cut(s) 180
BsiHKAI GWGCWC 2 cut(s) 261, 1788
BsiHKCI CYCGRG 1 cut(s) 260
BslFI GGGAC 7 cut(s) 45, 337, 503, 1081, 1122, 1265, 1574
BslI CCNNNNNNNGG 7 cut(s) 198, 218, 321, 498, 587, 1148, 1579
BsmAI GTCTC 5 cut(s) 496, 610, 1182, 1578, 1631
BsmFI GGGAC 7 cut(s) 45, 337, 503, 1081, 1122, 1265, 1574
BsmI GAATGC 2 cut(s) 664, 850
BsnI GGCC 3 cut(s) 44, 202, 591
BsoBI CYCGRG 1 cut(s) 260
Bsp1286I GDGCHC 3 cut(s) 261, 737, 1788
Bsp13I TCCGGA 1 cut(s) 297
Bsp143I GATC 5 cut(s) 102, 150, 823, 956, 1459
Bsp19I CCATGG 1 cut(s) 523
BspACI CCGC 2 cut(s) 1424, 1524
BspANI GGCC 3 cut(s) 44, 202, 591
BspEI TCCGGA 1 cut(s) 297
BspLI GGNNCC 6 cut(s) 368, 512, 734, 1013, 1069, 1253
BspMAI CTGCAG 2 cut(s) 82, 469
BspMI ACCTGC 2 cut(s) 1423, 1510
BspPI GGATC 3 cut(s) 97, 818, 951
BspQI GCTCTTC 1 cut(s) 1695
BspT107I GGYRCC 1 cut(s) 366
BspTI CTTAAG 1 cut(s) 707
BsrFI RCCGGY 2 cut(s) 180, 191
BsrI ACTGG 2 cut(s) 39, 749
BssAI RCCGGY 2 cut(s) 180, 191
BssECI CCNNGG 4 cut(s) 106, 135, 362, 523
BssMI GATC 5 cut(s) 102, 150, 823, 956, 1459
BssSI CACGAG 2 cut(s) 474, 1179
BssT1I CCWWGG 2 cut(s) 362, 523
Bst2BI CACGAG 2 cut(s) 474, 1179
Bst2UI CCWGG 3 cut(s) 137, 1009, 1072
Bst4CI ACNGT 1 cut(s) 762
Bst6I CTCTTC 3 cut(s) 245, 922, 1695
BstAFI CTTAAG 1 cut(s) 707
BstC8I GCNNGC 4 cut(s) 189, 788, 945, 1554
BstDEI CTNAG 3 cut(s) 728, 829, 1331
BstDSI CCRYGG 2 cut(s) 106, 523
BstF5I GGATG 2 cut(s) 1432, 1621
BstKTI GATC 5 cut(s) 105, 153, 826, 959, 1462
BstMAI GTCTC 5 cut(s) 496, 610, 1182, 1578, 1631
BstMBI GATC 5 cut(s) 102, 150, 823, 956, 1459
BstMWI GCNNNNNNNGC 4 cut(s) 50, 208, 792, 1602
BstNI CCWGG 3 cut(s) 137, 1009, 1072
BstNSI RCATGY 3 cut(s) 344, 783, 1591
BstSCI CCNGG 4 cut(s) 135, 445, 1007, 1070
BstSFI CTRYAG 2 cut(s) 78, 465
BstV1I GCAGC 4 cut(s) 92, 451, 1735, 1738
BstV2I GAAGAC 1 cut(s) 761
BstX2I RGATCY 1 cut(s) 956
BstYI RGATCY 1 cut(s) 956
BsuI GTATCC 2 cut(s) 564, 617
BsuRI GGCC 3 cut(s) 44, 202, 591
BtgI CCRYGG 2 cut(s) 106, 523
BtgZI GCGATG 1 cut(s) 1782
BtsCI GGATG 2 cut(s) 1432, 1621
BtsIMutI CAGTG 2 cut(s) 756, 767
BveI ACCTGC 2 cut(s) 1423, 1510
Cac8I GCNNGC 4 cut(s) 189, 788, 945, 1554
Cfr10I RCCGGY 2 cut(s) 180, 191
Cfr13I GGNCC 4 cut(s) 1011, 1068, 1252, 1412
Csp6I GTAC 5 cut(s) 338, 367, 479, 1512, 1652
CspAI ACCGGT 1 cut(s) 180
CviQI GTAC 5 cut(s) 338, 367, 479, 1512, 1652
DdeI CTNAG 3 cut(s) 728, 829, 1331
DpnI GATC 5 cut(s) 104, 152, 825, 958, 1461
DpnII GATC 5 cut(s) 102, 150, 823, 956, 1459
DraI TTTAAA 2 cut(s) 606, 1812
EaeI YGGCCR 2 cut(s) 42, 200
Eam1104I CTCTTC 3 cut(s) 245, 922, 1695
EarI CTCTTC 3 cut(s) 245, 922, 1695
Ecl136II GAGCTC 2 cut(s) 259, 1786
Eco130I CCWWGG 2 cut(s) 362, 523
Eco24I GRGCYC 3 cut(s) 261, 737, 1788
Eco32I GATATC 1 cut(s) 599
Eco47I GGWCC 4 cut(s) 1011, 1068, 1252, 1412
Eco53kI GAGCTC 2 cut(s) 259, 1786
Eco57I CTGAAG 3 cut(s) 663, 1428, 1440
Eco88I CYCGRG 1 cut(s) 260
EcoICRI GAGCTC 2 cut(s) 259, 1786
EcoO109I RGGNCCY 2 cut(s) 1068, 1412
EcoRII CCWGG 3 cut(s) 135, 1007, 1070
EcoRV GATATC 1 cut(s) 599
EcoT14I CCWWGG 2 cut(s) 362, 523
EcoT38I GRGCYC 3 cut(s) 261, 737, 1788
ErhI CCWWGG 2 cut(s) 362, 523
FalI AAGNNNNNCTT 8 cut(s) 721, 753, 1549, 1581, 1616, 1648, 1638, 1670
FaqI GGGAC 7 cut(s) 45, 337, 503, 1081, 1122, 1265, 1574
Fnu4HI GCNGC 4 cut(s) 81, 465, 1749, 1752
FokI GGATG 2 cut(s) 1439, 1628
FriOI GRGCYC 3 cut(s) 261, 737, 1788
Fsp4HI GCNGC 4 cut(s) 81, 465, 1749, 1752
GluI GCNGC 4 cut(s) 81, 465, 1749, 1752
GsaI CCCAGC 1 cut(s) 552
GsuI CTGGAG 1 cut(s) 56
HaeIII GGCC 3 cut(s) 44, 202, 591
HincII GTYRAC 1 cut(s) 1081
HindII GTYRAC 1 cut(s) 1081
HindIII AAGCTT 2 cut(s) 1371, 1832
HinfI GANTC 8 cut(s) 48, 206, 470, 516, 899, 1089, 1175, 1772
HphI GGTGA 2 cut(s) 160, 887
Hpy166II GTNNAC 4 cut(s) 355, 1081, 1312, 1691
Hpy188I TCNGA 6 cut(s) 155, 175, 515, 907, 1219, 1542
Hpy188III TCNNGA 4 cut(s) 298, 474, 954, 1463
Hpy8I GTNNAC 4 cut(s) 355, 1081, 1312, 1691
Hpy99I CGWCG 1 cut(s) 22
HpyAV CCTTC 9 cut(s) 24, 80, 279, 747, 801, 1069, 1403, 1460, 1712
HpyCH4III ACNGT 1 cut(s) 762
HpyCH4IV ACGT 2 cut(s) 399, 484
HpyCH4V TGCA 5 cut(s) 80, 427, 467, 943, 1670
HpyF10VI GCNNNNNNNGC 4 cut(s) 50, 208, 792, 1602
HpyF3I CTNAG 3 cut(s) 728, 829, 1331
HpySE526I ACGT 2 cut(s) 399, 484
Kpn2I TCCGGA 1 cut(s) 297
KpnI GGTACC 1 cut(s) 370
Kzo9I GATC 5 cut(s) 102, 150, 823, 956, 1459
LguI GCTCTTC 1 cut(s) 1695
LmnI GCTCC 5 cut(s) 419, 583, 732, 1403, 1610
Lsp1109I GCAGC 4 cut(s) 92, 451, 1735, 1738
LweI GCATC 2 cut(s) 535, 702
MaeII ACGT 2 cut(s) 399, 484
MaeIII GTNAC 3 cut(s) 139, 702, 1618
MalI GATC 5 cut(s) 104, 152, 825, 958, 1461
MboI GATC 5 cut(s) 102, 150, 823, 956, 1459
MfeI CAATTG 1 cut(s) 819
MflI RGATCY 1 cut(s) 956
MhlI GDGCHC 3 cut(s) 261, 737, 1788
MlyI GAGTC 4 cut(s) 525, 893, 1184, 1766
MroI TCCGGA 1 cut(s) 297
MslI CAYNNNNRTG 1 cut(s) 606
MspCI CTTAAG 1 cut(s) 707
MspR9I CCNGG 4 cut(s) 137, 447, 1009, 1072
MunI CAATTG 1 cut(s) 819
Mva1269I GAATGC 2 cut(s) 664, 850
MvaI CCWGG 3 cut(s) 137, 1009, 1072
MwoI GCNNNNNNNGC 4 cut(s) 50, 208, 792, 1602
NciI CCSGG 1 cut(s) 447
NcoI CCATGG 1 cut(s) 523
NdeII GATC 5 cut(s) 102, 150, 823, 956, 1459
NlaIV GGNNCC 6 cut(s) 368, 512, 734, 1013, 1069, 1253
NmuCI GTSAC 1 cut(s) 1618
NspI RCATGY 3 cut(s) 344, 783, 1591
PaqCI CACCTGC 1 cut(s) 1510
PciI ACATGT 2 cut(s) 340, 1587
PciSI GCTCTTC 1 cut(s) 1695
PcsI WCGNNNNNNNCGW 1 cut(s) 481
PctI GAATGC 2 cut(s) 664, 850
PfeI GAWTC 4 cut(s) 48, 206, 470, 1089
PflMI CCANNNNNTGG 2 cut(s) 1148, 1579
PinAI ACCGGT 1 cut(s) 180
PkrI GCNGC 4 cut(s) 82, 466, 1750, 1753
PleI GAGTC 4 cut(s) 524, 893, 1183, 1766
PpsI GAGTC 4 cut(s) 524, 893, 1183, 1766
PpuMI RGGWCCY 2 cut(s) 1068, 1412
PscI ACATGT 2 cut(s) 340, 1587
PsiI TTATAA 1 cut(s) 803
Psp124BI GAGCTC 2 cut(s) 261, 1788
Psp5II RGGWCCY 2 cut(s) 1068, 1412
Psp6I CCWGG 3 cut(s) 135, 1007, 1070
PspFI CCCAGC 1 cut(s) 548
PspGI CCWGG 3 cut(s) 135, 1007, 1070
PspN4I GGNNCC 6 cut(s) 368, 512, 734, 1013, 1069, 1253
PspPI GGNCC 4 cut(s) 1011, 1068, 1252, 1412
PspPPI RGGWCCY 2 cut(s) 1068, 1412
PstI CTGCAG 2 cut(s) 82, 469
PsuI RGATCY 1 cut(s) 956
RsaI GTAC 5 cut(s) 339, 368, 480, 1513, 1653
RsaNI GTAC 5 cut(s) 338, 367, 479, 1512, 1652
RseI CAYNNNNRTG 1 cut(s) 606
SacI GAGCTC 2 cut(s) 261, 1788
SapI GCTCTTC 1 cut(s) 1695
SatI GCNGC 4 cut(s) 81, 465, 1749, 1752
Sau3AI GATC 5 cut(s) 102, 150, 823, 956, 1459
Sau96I GGNCC 4 cut(s) 1011, 1068, 1252, 1412
ScaI AGTACT 2 cut(s) 480, 1653
SchI GAGTC 4 cut(s) 525, 893, 1184, 1766
ScrFI CCNGG 4 cut(s) 137, 447, 1009, 1072
SduI GDGCHC 3 cut(s) 261, 737, 1788
SfaNI GCATC 2 cut(s) 535, 702
SfcI CTRYAG 2 cut(s) 78, 465
SinI GGWCC 4 cut(s) 1011, 1068, 1252, 1412
SmiI ATTTAAAT 1 cut(s) 606
SmiMI CAYNNNNRTG 1 cut(s) 606
SmlI CTYRAG 4 cut(s) 707, 952, 1234, 1742
SmoI CTYRAG 4 cut(s) 707, 952, 1234, 1742
SpeI ACTAGT 1 cut(s) 965
SsiI CCGC 2 cut(s) 1424, 1524
SstI GAGCTC 2 cut(s) 261, 1788
StyD4I CCNGG 4 cut(s) 135, 445, 1007, 1070
StyI CCWWGG 2 cut(s) 362, 523
SwaI ATTTAAAT 1 cut(s) 606
TaaI ACNGT 1 cut(s) 762
TaiI ACGT 2 cut(s) 402, 487
TaqI TCGA 6 cut(s) 17, 101, 240, 897, 1464, 1698
TatI WGTACW 3 cut(s) 337, 478, 1651
TfiI GAWTC 4 cut(s) 48, 206, 470, 1089
TscAI CASTG 2 cut(s) 756, 767
TseFI GTSAC 1 cut(s) 1618
TseI GCWGC 4 cut(s) 80, 464, 1748, 1751
Tsp45I GTSAC 1 cut(s) 1618
TspGWI ACGGA 1 cut(s) 95
TspRI CASTG 2 cut(s) 756, 767
Van91I CCANNNNNTGG 2 cut(s) 1148, 1579
Vha464I CTTAAG 1 cut(s) 707
VpaK11BI GGWCC 4 cut(s) 1011, 1068, 1252, 1412
XapI RAATTY 2 cut(s) 647, 1451
XceI RCATGY 3 cut(s) 344, 783, 1591
XcmI CCANNNNNNNNNTGG 3 cut(s) 869, 1005, 1630
XmaJI CCTAGG 1 cut(s) 362
ZrmI AGTACT 2 cut(s) 480, 1653
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.