Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001154

Physical Location & Seq

Genomic Coordinates Reverse (-)

60468767 .. 60473189

Gene Structure 4423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG407700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGATTTGCAAGCAAACTCAAGGTCCTTAACTAGTAGAAGTGGAAGAAATAAAGAGAAGCAACCATCACACACCTGGACCCCTATTGAAGATGTAGCTCTAGTTGAGGCTTTGACTGAACTTTGTGTTTCTGAGACCTGGAAGGTTGACAATGGATTCAAGGCAGGATATTTGGGACAACTAGAAAAAATTATAGAGCAAAAGCCACCAAATTGTGGATTAAAGGCGAATCTCCACATTGAGTCTCTTGTTAAGACACTAAAGAAACAAACGCTTGCCATCTCTGACATGATTGCTAACTCAAGTGGCTTCTCATGGGACCACGAAAATAAAATGGTTGTTTGTGAAAAACAAGTGTATGATGATTGGGTTAAGACTAGAAAGCGAGCAAGGGACGCTTATGCTCAATGCTTGGGAGACATGGCTAGCCCACTTCGCTCCTTTGTGGATGTGACCAAGACACACTTGGAAATTATGAAAGAAGTACTTTTGAATGACCATGCAACATCTACAAAAAGAGGTAAACTTGTCGAAGAGCTTATGAAAATTGAAGGTTTGAATGATTATGATGTGCTTGAGGCTGCTGCTACAATTATTGGCGATGATTCCAAAATTGAGCTCTTGTTCAGCTTACCTGACAATTTAAAGAGCCAATGGATTTACAAGATTCTTAACCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

226

Amino Acids

25.58

Weight (kDa)

6.1

Isoelectric Point (pI)

48.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_3	PF12776	25 - 121	7.5e-06	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001154)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g08194
prunus_persica	Prupe.4G257700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0343671 RchiOBHm_Chr5g0072391 RchiOBHm_Chr6g0274461 RchiOBHm_Chr6g0284621
rosa_laevigata	RLG00000001201 RLG00000008793 RLG00000013285 RLG00000013580 RLG00000015412 RLG00000020159 RLG00000022735 RLG00000029912 RLG00000030782 RLG00000032954
rosa_multiflora	Rmu_sc0000233.1_g000006 Rmu_sc0001240.1_g000006 Rmu_sc0002352.1_g000014 Rmu_sc0003882.1_g000036 Rmu_sc0004016.1_g000017 Rmu_sc0004698.1_g000002 Rmu_sc0006651.1_g000003 Rmu_sc0009984.1_g000002 Rmu_sc0010945.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083960 Rroxscaffold_2G00137540 Rroxscaffold_2G00137550 Rroxscaffold_3G00226540 Rroxscaffold_3G00276350 Rroxscaffold_7G00175350
rosa_rugosa	Rorug02G0052000 Rorug04G0314300 Rorug05G0057300 Rorug06G0033500
rosa_samantha	Rh1CG381500 Rh2DG003400 Rh3BG333400 Rh4AG123000 Rh4AG311600 Rh4AG339700 Rh4CG303900 Rh4CG334100 Rh5AG318400 Rh5BG324000 Rh6AG407700 Rh6BG340400 Rh7AG126300 Rh7CG042400 Rh7CG042500 Rh7CG154400 Rh7CG166300 Rh7CG315500
rosa_wichuraiana	Rw5G010820 Rw5G026590 Rw6G003280 Rw6G021230 Rw7G013220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	215
AfaI	GTAC	1 cut(s)	486
AfiI	CCNNNNNNNGG	1 cut(s)	215
AgsI	TTSAA	5 cut(s)	89, 160, 493, 551, 559
AhlI	ACTAGT	1 cut(s)	32
AjnI	CCWGG	2 cut(s)	74, 137
AluBI	AGCT	4 cut(s)	98, 538, 619, 630
AluI	AGCT	4 cut(s)	98, 538, 619, 630
Alw21I	GWGCWC	1 cut(s)	621
Alw26I	GTCTC	3 cut(s)	128, 249, 411
ApeKI	GCWGC	2 cut(s)	581, 584
ArsI	GACNNNNNNTTYG	2 cut(s)	8, 40
AspS9I	GGNCC	3 cut(s)	24, 78, 319
AsuNHI	GCTAGC	1 cut(s)	425
AvaII	GGWCC	3 cut(s)	24, 78, 319
BanII	GRGCYC	1 cut(s)	621
Bbv12I	GWGCWC	1 cut(s)	621
BbvI	GCAGC	2 cut(s)	568, 571
BccI	CCATC	2 cut(s)	73, 287
BciT130I	CCWGG	2 cut(s)	76, 139
BcoDI	GTCTC	3 cut(s)	128, 249, 411
BcuI	ACTAGT	1 cut(s)	32
BfaI	CTAG	6 cut(s)	33, 101, 182, 378, 426, 679
BisI	GCNGC	2 cut(s)	582, 585
BlsI	GCNGC	2 cut(s)	583, 586
BmcAI	AGTACT	1 cut(s)	486
Bme1390I	CCNGG	2 cut(s)	76, 139
Bme18I	GGWCC	3 cut(s)	24, 78, 319
BmgT120I	GGNCC	3 cut(s)	24, 78, 319
BmiI	GGNNCC	2 cut(s)	80, 320
BmrFI	CCNGG	2 cut(s)	76, 139
BmtI	GCTAGC	1 cut(s)	429
BpuEI	CTTGAG	3 cut(s)	4, 286, 596
BsaI	GGTCTC	1 cut(s)	128
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
BseBI	CCWGG	2 cut(s)	76, 139
BseGI	GGATG	1 cut(s)	454
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseMII	CTCAG	1 cut(s)	123
BseXI	GCAGC	2 cut(s)	568, 571
BsiHKAI	GWGCWC	1 cut(s)	621
BslFI	GGGAC	3 cut(s)	189, 332, 407
BslI	CCNNNNNNNGG	1 cut(s)	215
BsmAI	GTCTC	3 cut(s)	128, 249, 411
BsmFI	GGGAC	3 cut(s)	189, 332, 407
Bso31I	GGTCTC	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	621
BspCNI	CTCAG	1 cut(s)	124
BspLI	GGNNCC	2 cut(s)	80, 320
BspOI	GCTAGC	1 cut(s)	429
BspQI	GCTCTTC	1 cut(s)	528
BspTNI	GGTCTC	1 cut(s)	128
Bst2UI	CCWGG	2 cut(s)	76, 139
Bst6I	CTCTTC	1 cut(s)	528
BstC8I	GCNNGC	4 cut(s)	12, 276, 387, 427
BstDEI	CTNAG	1 cut(s)	132
BstF5I	GGATG	1 cut(s)	454
BstMAI	GTCTC	3 cut(s)	128, 249, 411
BstMWI	GCNNNNNNNGC	2 cut(s)	395, 435
BstNI	CCWGG	2 cut(s)	76, 139
BstSCI	CCNGG	2 cut(s)	74, 137
BstV1I	GCAGC	2 cut(s)	568, 571
BtgZI	GCGATG	1 cut(s)	615
BtsCI	GGATG	1 cut(s)	454
Cac8I	GCNNGC	4 cut(s)	12, 276, 387, 427
Cfr13I	GGNCC	3 cut(s)	24, 78, 319
CseI	GACGC	1 cut(s)	404
Csp6I	GTAC	1 cut(s)	485
CviAII	CATG	4 cut(s)	289, 315, 421, 500
CviQI	GTAC	1 cut(s)	485
DdeI	CTNAG	1 cut(s)	132
DraI	TTTAAA	1 cut(s)	645
Eam1104I	CTCTTC	1 cut(s)	528
EarI	CTCTTC	1 cut(s)	528
Ecl136II	GAGCTC	1 cut(s)	619
Eco24I	GRGCYC	1 cut(s)	621
Eco31I	GGTCTC	1 cut(s)	128
Eco47I	GGWCC	3 cut(s)	24, 78, 319
Eco53kI	GAGCTC	1 cut(s)	619
EcoICRI	GAGCTC	1 cut(s)	619
EcoO109I	RGGNCCY	1 cut(s)	24
EcoRII	CCWGG	2 cut(s)	74, 137
EcoT38I	GRGCYC	1 cut(s)	621
FaeI	CATG	4 cut(s)	292, 318, 424, 503
FalI	AAGNNNNNCTT	6 cut(s)	382, 414, 449, 481, 471, 503
FaqI	GGGAC	3 cut(s)	189, 332, 407
FatI	CATG	4 cut(s)	288, 314, 420, 499
Fnu4HI	GCNGC	2 cut(s)	582, 585
FokI	GGATG	1 cut(s)	461
FriOI	GRGCYC	1 cut(s)	621
Fsp4HI	GCNGC	2 cut(s)	582, 585
FspBI	CTAG	6 cut(s)	33, 101, 182, 378, 426, 679
GluI	GCNGC	2 cut(s)	582, 585
HgaI	GACGC	1 cut(s)	404
Hin1II	CATG	4 cut(s)	292, 318, 424, 503
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HinfI	GANTC	5 cut(s)	156, 229, 242, 605, 667
Hpy166II	GTNNAC	2 cut(s)	148, 524
Hpy188I	TCNGA	2 cut(s)	133, 286
Hpy8I	GTNNAC	2 cut(s)	148, 524
HpyAV	CCTTC	2 cut(s)	136, 545
HpyCH4V	TGCA	2 cut(s)	10, 503
HpyF10VI	GCNNNNNNNGC	2 cut(s)	395, 435
HpyF3I	CTNAG	1 cut(s)	132
Hsp92II	CATG	4 cut(s)	292, 318, 424, 503
LguI	GCTCTTC	1 cut(s)	528
LmnI	GCTCC	1 cut(s)	443
LpnPI	CCDG	6 cut(s)	61, 88, 124, 150, 151, 648
Lsp1109I	GCAGC	2 cut(s)	568, 571
MaeI	CTAG	6 cut(s)	33, 101, 182, 378, 426, 679
MaeIII	GTNAC	1 cut(s)	451
MboII	GAAGA	3 cut(s)	57, 101, 545
MhlI	GDGCHC	1 cut(s)	621
MluCI	AATT	7 cut(s)	189, 211, 471, 546, 591, 612, 640
MlyI	GAGTC	1 cut(s)	251
MnlI	CCTC	3 cut(s)	100, 512, 571
MseI	TTAA	6 cut(s)	29, 221, 252, 372, 644, 672
MspR9I	CCNGG	2 cut(s)	76, 139
MvaI	CCWGG	2 cut(s)	76, 139
MwoI	GCNNNNNNNGC	2 cut(s)	395, 435
NheI	GCTAGC	1 cut(s)	425
NlaIII	CATG	4 cut(s)	292, 318, 424, 503
NlaIV	GGNNCC	2 cut(s)	80, 320
NmuCI	GTSAC	1 cut(s)	451
PciSI	GCTCTTC	1 cut(s)	528
PfeI	GAWTC	4 cut(s)	156, 229, 605, 667
PflMI	CCANNNNNTGG	1 cut(s)	215
PkrI	GCNGC	2 cut(s)	583, 586
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
PpuMI	RGGWCCY	1 cut(s)	24
Psp124BI	GAGCTC	1 cut(s)	621
Psp5II	RGGWCCY	1 cut(s)	24
Psp6I	CCWGG	2 cut(s)	74, 137
PspGI	CCWGG	2 cut(s)	74, 137
PspN4I	GGNNCC	2 cut(s)	80, 320
PspPI	GGNCC	3 cut(s)	24, 78, 319
PspPPI	RGGWCCY	1 cut(s)	24
RsaI	GTAC	1 cut(s)	486
RsaNI	GTAC	1 cut(s)	485
SacI	GAGCTC	1 cut(s)	621
SapI	GCTCTTC	1 cut(s)	528
SaqAI	TTAA	6 cut(s)	29, 221, 252, 372, 644, 672
SatI	GCNGC	2 cut(s)	582, 585
Sau96I	GGNCC	3 cut(s)	24, 78, 319
ScaI	AGTACT	1 cut(s)	486
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	2 cut(s)	76, 139
SduI	GDGCHC	1 cut(s)	621
SinI	GGWCC	3 cut(s)	24, 78, 319
SmlI	CTYRAG	3 cut(s)	19, 301, 575
SmoI	CTYRAG	3 cut(s)	19, 301, 575
SpeI	ACTAGT	1 cut(s)	32
Sse9I	AATT	7 cut(s)	189, 211, 471, 546, 591, 612, 640
SspMI	CTAG	6 cut(s)	33, 101, 182, 378, 426, 679
SstI	GAGCTC	1 cut(s)	621
StyD4I	CCNGG	2 cut(s)	74, 137
TaqI	TCGA	1 cut(s)	531
TasI	AATT	7 cut(s)	189, 211, 471, 546, 591, 612, 640
TatI	WGTACW	1 cut(s)	484
TfiI	GAWTC	4 cut(s)	156, 229, 605, 667
Tru1I	TTAA	6 cut(s)	29, 221, 252, 372, 644, 672
Tru9I	TTAA	6 cut(s)	29, 221, 252, 372, 644, 672
TseFI	GTSAC	1 cut(s)	451
TseI	GCWGC	2 cut(s)	581, 584
Tsp45I	GTSAC	1 cut(s)	451
TspDTI	ATGAA	2 cut(s)	491, 557
Van91I	CCANNNNNTGG	1 cut(s)	215
VpaK11BI	GGWCC	3 cut(s)	24, 78, 319
XcmI	CCANNNNNNNNNTGG	2 cut(s)	72, 463
XspI	CTAG	6 cut(s)	33, 101, 182, 378, 426, 679
ZrmI	AGTACT	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.