Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001154

Physical Location & Seq

Genomic Coordinates Reverse (-)

11940243 .. 11941189

Gene Structure 947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G010820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGATTGCTAACTCAAGTGGCTTCTCATGGGACCATGAAAATAAAATGGTTGTTTGCGAAAAACAAGTGTATGACGATTGGGTTAAGGTTCACAAGGAAGCCAAAGGACTAAGACTTAAACCATTCATTCATTATGATAGTTTGGTGGAAGCTTTTGGGAGAGATAGAGCCAATGGGTTAGGAGCTGAAGGACCTGCTGAAGCGAATGAAGATTTGAATAATGATAATGAATTTGTTGATCTTGAAGGAGATGGTTTGCCTGAAAATATTGTTCCTACACCTGCTACTCGTACAACTTCTTCTGCTTCTAATTCAACTCGGACTAGAAAGCGAGCAAGGGACGCTTATGCTCAATGCTTGGGAGACATGGCTAGCACACTTCGCTCCTTTGTGGATGTGACCAAGACACACTTGGAGACTATGAAAGAAGTACTTTTGAATGACCATGCAACATCTAAAAAAAGAGATAAACTTGTCGAAGAGCTTATGAAAATTGAAGGTTTGAATGATTATGATGTGCTTGAGGCTGCTGCTACAATTATTGGCGATGATTCCAAAATTGAGCTCTTGTTCAGCTTACCTGACAATTTAAAGAGCCAATGGATTTACAAGCTTCTTAACCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

208

Amino Acids

23.36

Weight (kDa)

5.1

Isoelectric Point (pI)

40.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001154)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g08194
prunus_persica	Prupe.4G257700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0343671 RchiOBHm_Chr5g0072391 RchiOBHm_Chr6g0274461 RchiOBHm_Chr6g0284621
rosa_laevigata	RLG00000001201 RLG00000008793 RLG00000013285 RLG00000013580 RLG00000015412 RLG00000020159 RLG00000022735 RLG00000029912 RLG00000030782 RLG00000032954
rosa_multiflora	Rmu_sc0000233.1_g000006 Rmu_sc0001240.1_g000006 Rmu_sc0002352.1_g000014 Rmu_sc0003882.1_g000036 Rmu_sc0004016.1_g000017 Rmu_sc0004698.1_g000002 Rmu_sc0006651.1_g000003 Rmu_sc0009984.1_g000002 Rmu_sc0010945.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083960 Rroxscaffold_2G00137540 Rroxscaffold_2G00137550 Rroxscaffold_3G00226540 Rroxscaffold_3G00276350 Rroxscaffold_7G00175350
rosa_rugosa	Rorug02G0052000 Rorug04G0314300 Rorug05G0057300 Rorug06G0033500
rosa_samantha	Rh1CG381500 Rh2DG003400 Rh3BG333400 Rh4AG123000 Rh4AG311600 Rh4AG339700 Rh4CG303900 Rh4CG334100 Rh5AG318400 Rh5BG324000 Rh6AG407700 Rh6BG340400 Rh7AG126300 Rh7CG042400 Rh7CG042500 Rh7CG154400 Rh7CG166300 Rh7CG315500
rosa_wichuraiana	Rw5G010820 Rw5G026590 Rw6G003280 Rw6G021230 Rw7G013220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	289
Acc36I	ACCTGC	2 cut(s)	202, 289
AcsI	RAATTY	1 cut(s)	230
AcuI	CTGAAG	2 cut(s)	207, 219
AfaI	GTAC	2 cut(s)	292, 432
AgsI	TTSAA	6 cut(s)	217, 245, 315, 439, 497, 505
AluBI	AGCT	6 cut(s)	152, 185, 484, 565, 576, 613
AluI	AGCT	6 cut(s)	152, 185, 484, 565, 576, 613
Alw21I	GWGCWC	1 cut(s)	567
Alw26I	GTCTC	2 cut(s)	357, 410
ApeKI	GCWGC	2 cut(s)	527, 530
ApoI	RAATTY	1 cut(s)	230
AspS9I	GGNCC	2 cut(s)	31, 191
AsuNHI	GCTAGC	1 cut(s)	371
AvaII	GGWCC	2 cut(s)	31, 191
BanII	GRGCYC	1 cut(s)	567
BarI	GAAGNNNNNNTAC	2 cut(s)	283, 315
Bbv12I	GWGCWC	1 cut(s)	567
BbvI	GCAGC	2 cut(s)	514, 517
BccI	CCATC	1 cut(s)	245
BcoDI	GTCTC	2 cut(s)	357, 410
BfaI	CTAG	3 cut(s)	324, 372, 625
BfuAI	ACCTGC	2 cut(s)	202, 289
BisI	GCNGC	2 cut(s)	528, 531
BlsI	GCNGC	2 cut(s)	529, 532
BmcAI	AGTACT	1 cut(s)	432
Bme18I	GGWCC	2 cut(s)	31, 191
BmgT120I	GGNCC	2 cut(s)	31, 191
BmiI	GGNNCC	1 cut(s)	32
BmtI	GCTAGC	1 cut(s)	375
BpuEI	CTTGAG	1 cut(s)	542
BseGI	GGATG	1 cut(s)	400
BseXI	GCAGC	2 cut(s)	514, 517
BsiHKAI	GWGCWC	1 cut(s)	567
BslFI	GGGAC	2 cut(s)	44, 353
BsmAI	GTCTC	2 cut(s)	357, 410
BsmFI	GGGAC	2 cut(s)	44, 353
Bsp1286I	GDGCHC	1 cut(s)	567
Bsp143I	GATC	1 cut(s)	238
BspLI	GGNNCC	1 cut(s)	32
BspMI	ACCTGC	2 cut(s)	202, 289
BspOI	GCTAGC	1 cut(s)	375
BspQI	GCTCTTC	1 cut(s)	474
BssMI	GATC	1 cut(s)	238
Bst6I	CTCTTC	1 cut(s)	474
BstC8I	GCNNGC	2 cut(s)	333, 373
BstDEI	CTNAG	1 cut(s)	110
BstF5I	GGATG	1 cut(s)	400
BstKTI	GATC	1 cut(s)	241
BstMAI	GTCTC	2 cut(s)	357, 410
BstMBI	GATC	1 cut(s)	238
BstMWI	GCNNNNNNNGC	2 cut(s)	341, 381
BstV1I	GCAGC	2 cut(s)	514, 517
BtgZI	GCGATG	1 cut(s)	561
BtsCI	GGATG	1 cut(s)	400
BveI	ACCTGC	2 cut(s)	202, 289
Cac8I	GCNNGC	2 cut(s)	333, 373
Cfr13I	GGNCC	2 cut(s)	31, 191
CseI	GACGC	1 cut(s)	350
Csp6I	GTAC	2 cut(s)	291, 431
CviAII	CATG	4 cut(s)	27, 35, 367, 446
CviQI	GTAC	2 cut(s)	291, 431
DdeI	CTNAG	1 cut(s)	110
DpnI	GATC	1 cut(s)	240
DpnII	GATC	1 cut(s)	238
DraI	TTTAAA	1 cut(s)	591
Eam1104I	CTCTTC	1 cut(s)	474
EarI	CTCTTC	1 cut(s)	474
Ecl136II	GAGCTC	1 cut(s)	565
Eco24I	GRGCYC	1 cut(s)	567
Eco47I	GGWCC	2 cut(s)	31, 191
Eco53kI	GAGCTC	1 cut(s)	565
Eco57I	CTGAAG	2 cut(s)	207, 219
EcoICRI	GAGCTC	1 cut(s)	565
EcoO109I	RGGNCCY	1 cut(s)	191
EcoT38I	GRGCYC	1 cut(s)	567
FaeI	CATG	4 cut(s)	30, 38, 370, 449
FalI	AAGNNNNNCTT	6 cut(s)	328, 360, 395, 427, 417, 449
FaqI	GGGAC	2 cut(s)	44, 353
FatI	CATG	4 cut(s)	26, 34, 366, 445
Fnu4HI	GCNGC	2 cut(s)	528, 531
FokI	GGATG	1 cut(s)	407
FriOI	GRGCYC	1 cut(s)	567
Fsp4HI	GCNGC	2 cut(s)	528, 531
FspBI	CTAG	3 cut(s)	324, 372, 625
GluI	GCNGC	2 cut(s)	528, 531
HgaI	GACGC	1 cut(s)	350
Hin1II	CATG	4 cut(s)	30, 38, 370, 449
HindIII	AAGCTT	2 cut(s)	150, 611
HinfI	GANTC	1 cut(s)	551
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	1 cut(s)	321
Hpy188III	TCNNGA	1 cut(s)	242
Hpy8I	GTNNAC	1 cut(s)	91
HpyAV	CCTTC	3 cut(s)	182, 239, 491
HpyCH4V	TGCA	1 cut(s)	449
HpyF10VI	GCNNNNNNNGC	2 cut(s)	341, 381
HpyF3I	CTNAG	1 cut(s)	110
Hsp92II	CATG	4 cut(s)	30, 38, 370, 449
Kzo9I	GATC	1 cut(s)	238
LguI	GCTCTTC	1 cut(s)	474
LmnI	GCTCC	2 cut(s)	182, 389
LpnPI	CCDG	4 cut(s)	207, 273, 294, 594
Lsp1109I	GCAGC	2 cut(s)	514, 517
MaeI	CTAG	3 cut(s)	324, 372, 625
MaeIII	GTNAC	1 cut(s)	397
MalI	GATC	1 cut(s)	240
MboI	GATC	1 cut(s)	238
MboII	GAAGA	3 cut(s)	221, 291, 491
MhlI	GDGCHC	1 cut(s)	567
MluCI	AATT	6 cut(s)	230, 310, 492, 537, 558, 586
MnlI	CCTC	1 cut(s)	517
MseI	TTAA	4 cut(s)	84, 117, 590, 618
MwoI	GCNNNNNNNGC	2 cut(s)	341, 381
NdeII	GATC	1 cut(s)	238
NheI	GCTAGC	1 cut(s)	371
NlaIII	CATG	4 cut(s)	30, 38, 370, 449
NlaIV	GGNNCC	1 cut(s)	32
NmuCI	GTSAC	1 cut(s)	397
PaqCI	CACCTGC	1 cut(s)	289
PciSI	GCTCTTC	1 cut(s)	474
PfeI	GAWTC	1 cut(s)	551
PkrI	GCNGC	2 cut(s)	529, 532
PpuMI	RGGWCCY	1 cut(s)	191
Psp124BI	GAGCTC	1 cut(s)	567
Psp5II	RGGWCCY	1 cut(s)	191
PspN4I	GGNNCC	1 cut(s)	32
PspPI	GGNCC	2 cut(s)	31, 191
PspPPI	RGGWCCY	1 cut(s)	191
RsaI	GTAC	2 cut(s)	292, 432
RsaNI	GTAC	2 cut(s)	291, 431
SacI	GAGCTC	1 cut(s)	567
SapI	GCTCTTC	1 cut(s)	474
SaqAI	TTAA	4 cut(s)	84, 117, 590, 618
SatI	GCNGC	2 cut(s)	528, 531
Sau3AI	GATC	1 cut(s)	238
Sau96I	GGNCC	2 cut(s)	31, 191
ScaI	AGTACT	1 cut(s)	432
SduI	GDGCHC	1 cut(s)	567
SinI	GGWCC	2 cut(s)	31, 191
SmlI	CTYRAG	2 cut(s)	13, 521
SmoI	CTYRAG	2 cut(s)	13, 521
Sse9I	AATT	6 cut(s)	230, 310, 492, 537, 558, 586
SspI	AATATT	1 cut(s)	268
SspMI	CTAG	3 cut(s)	324, 372, 625
SstI	GAGCTC	1 cut(s)	567
TaqI	TCGA	1 cut(s)	477
TasI	AATT	6 cut(s)	230, 310, 492, 537, 558, 586
TatI	WGTACW	1 cut(s)	430
TfiI	GAWTC	1 cut(s)	551
Tru1I	TTAA	4 cut(s)	84, 117, 590, 618
Tru9I	TTAA	4 cut(s)	84, 117, 590, 618
TseFI	GTSAC	1 cut(s)	397
TseI	GCWGC	2 cut(s)	527, 530
Tsp45I	GTSAC	1 cut(s)	397
TspDTI	ATGAA	7 cut(s)	51, 115, 119, 222, 243, 437, 503
VpaK11BI	GGWCC	2 cut(s)	31, 191
XapI	RAATTY	1 cut(s)	230
XcmI	CCANNNNNNNNNTGG	1 cut(s)	409
XspI	CTAG	3 cut(s)	324, 372, 625
ZrmI	AGTACT	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.