Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001154

Physical Location & Seq

Genomic Coordinates Reverse (-)

12611198 .. 12612144

Gene Structure 947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G013220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGATTGCTAACTCAAGTGACTTCTTATGGAACCATGAAAATAAAATGGTTGTTTGCGAAAAAAAAGTGTATGACGATTGGGTTAAGGTTCACAAGGAAGCCAAAGGACTAAGACTTAAACCATTCATTCATTATGATAGTTTGGTGGAAGCTTTTGGGAGAGATAGAGCCAATGGGTTAGGAGCTGAAGGACCTGCTGAAGCGGATGAAGATTTGAATAATGATAATGAATTTGTTGATCTTGAAGGAGATGCAAGGGACGCTTATGCTCAATGCTTGGGAGACATGGCTAGCACACTTCGCTCCTTTGTGGATGTGACCAAGACACACTTGGAGACTATGAAAGAAGTACTTTTGAATGACCATGCAACATCTACAAAAAGAGGTAAACTTGTCGAAGAGCTTATGAAAATTGAAGGTTTGAATGATTATGATGTGCTTGAGCCTGCTGCTGCAATTATTGGCGATGATTCCAAAATTGAGCTCTTGTTCAGCTTACCTGACAATTTAAAGAGCCAATGGATTTACAAGCTTCTTAACCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

181

Amino Acids

20.47

Weight (kDa)

4.76

Isoelectric Point (pI)

37.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001154)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g08194
prunus_persica	Prupe.4G257700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0343671 RchiOBHm_Chr5g0072391 RchiOBHm_Chr6g0274461 RchiOBHm_Chr6g0284621
rosa_laevigata	RLG00000001201 RLG00000008793 RLG00000013285 RLG00000013580 RLG00000015412 RLG00000020159 RLG00000022735 RLG00000029912 RLG00000030782 RLG00000032954
rosa_multiflora	Rmu_sc0000233.1_g000006 Rmu_sc0001240.1_g000006 Rmu_sc0002352.1_g000014 Rmu_sc0003882.1_g000036 Rmu_sc0004016.1_g000017 Rmu_sc0004698.1_g000002 Rmu_sc0006651.1_g000003 Rmu_sc0009984.1_g000002 Rmu_sc0010945.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083960 Rroxscaffold_2G00137540 Rroxscaffold_2G00137550 Rroxscaffold_3G00226540 Rroxscaffold_3G00276350 Rroxscaffold_7G00175350
rosa_rugosa	Rorug02G0052000 Rorug04G0314300 Rorug05G0057300 Rorug06G0033500
rosa_samantha	Rh1CG381500 Rh2DG003400 Rh3BG333400 Rh4AG123000 Rh4AG311600 Rh4AG339700 Rh4CG303900 Rh4CG334100 Rh5AG318400 Rh5BG324000 Rh6AG407700 Rh6BG340400 Rh7AG126300 Rh7CG042400 Rh7CG042500 Rh7CG154400 Rh7CG166300 Rh7CG315500
rosa_wichuraiana	Rw5G010820 Rw5G026590 Rw6G003280 Rw6G021230 Rw7G013220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	202
AciI	CCGC	1 cut(s)	203
AcsI	RAATTY	1 cut(s)	230
AcuI	CTGAAG	2 cut(s)	207, 219
AfaI	GTAC	1 cut(s)	351
AgsI	TTSAA	5 cut(s)	217, 245, 358, 416, 424
AluBI	AGCT	6 cut(s)	152, 185, 403, 484, 495, 532
AluI	AGCT	6 cut(s)	152, 185, 403, 484, 495, 532
Alw21I	GWGCWC	1 cut(s)	486
Alw26I	GTCTC	2 cut(s)	276, 329
ApeKI	GCWGC	2 cut(s)	449, 452
ApoI	RAATTY	1 cut(s)	230
AspS9I	GGNCC	1 cut(s)	191
AsuNHI	GCTAGC	1 cut(s)	290
AvaII	GGWCC	1 cut(s)	191
BanII	GRGCYC	1 cut(s)	486
Bbv12I	GWGCWC	1 cut(s)	486
BbvI	GCAGC	2 cut(s)	436, 439
BcoDI	GTCTC	2 cut(s)	276, 329
BfaI	CTAG	2 cut(s)	291, 544
BfuAI	ACCTGC	1 cut(s)	202
BisI	GCNGC	2 cut(s)	450, 453
BlsI	GCNGC	2 cut(s)	451, 454
BmcAI	AGTACT	1 cut(s)	351
Bme18I	GGWCC	1 cut(s)	191
BmgT120I	GGNCC	1 cut(s)	191
BmiI	GGNNCC	1 cut(s)	32
BmsI	GCATC	1 cut(s)	241
BmtI	GCTAGC	1 cut(s)	294
BpuEI	CTTGAG	1 cut(s)	461
BseGI	GGATG	2 cut(s)	211, 319
BseXI	GCAGC	2 cut(s)	436, 439
BsiHKAI	GWGCWC	1 cut(s)	486
BslFI	GGGAC	1 cut(s)	272
BsmAI	GTCTC	2 cut(s)	276, 329
BsmFI	GGGAC	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	486
Bsp143I	GATC	1 cut(s)	238
BspACI	CCGC	1 cut(s)	203
BspLI	GGNNCC	1 cut(s)	32
BspMI	ACCTGC	1 cut(s)	202
BspOI	GCTAGC	1 cut(s)	294
BspQI	GCTCTTC	1 cut(s)	393
BssMI	GATC	1 cut(s)	238
Bst6I	CTCTTC	1 cut(s)	393
BstC8I	GCNNGC	2 cut(s)	292, 447
BstDEI	CTNAG	1 cut(s)	110
BstF5I	GGATG	2 cut(s)	211, 319
BstKTI	GATC	1 cut(s)	241
BstMAI	GTCTC	2 cut(s)	276, 329
BstMBI	GATC	1 cut(s)	238
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 300
BstV1I	GCAGC	2 cut(s)	436, 439
BtgZI	GCGATG	1 cut(s)	480
BtsCI	GGATG	2 cut(s)	211, 319
BveI	ACCTGC	1 cut(s)	202
Cac8I	GCNNGC	2 cut(s)	292, 447
Cfr13I	GGNCC	1 cut(s)	191
CseI	GACGC	1 cut(s)	269
Csp6I	GTAC	1 cut(s)	350
CviAII	CATG	3 cut(s)	35, 286, 365
CviQI	GTAC	1 cut(s)	350
DdeI	CTNAG	1 cut(s)	110
DpnI	GATC	1 cut(s)	240
DpnII	GATC	1 cut(s)	238
DraI	TTTAAA	1 cut(s)	510
Eam1104I	CTCTTC	1 cut(s)	393
EarI	CTCTTC	1 cut(s)	393
Ecl136II	GAGCTC	1 cut(s)	484
Eco24I	GRGCYC	1 cut(s)	486
Eco47I	GGWCC	1 cut(s)	191
Eco53kI	GAGCTC	1 cut(s)	484
Eco57I	CTGAAG	2 cut(s)	207, 219
EcoICRI	GAGCTC	1 cut(s)	484
EcoO109I	RGGNCCY	1 cut(s)	191
EcoT38I	GRGCYC	1 cut(s)	486
FaeI	CATG	3 cut(s)	38, 289, 368
FalI	AAGNNNNNCTT	6 cut(s)	247, 279, 314, 346, 336, 368
FaqI	GGGAC	1 cut(s)	272
FatI	CATG	3 cut(s)	34, 285, 364
Fnu4HI	GCNGC	2 cut(s)	450, 453
FokI	GGATG	2 cut(s)	218, 326
FriOI	GRGCYC	1 cut(s)	486
Fsp4HI	GCNGC	2 cut(s)	450, 453
FspBI	CTAG	2 cut(s)	291, 544
GluI	GCNGC	2 cut(s)	450, 453
HgaI	GACGC	1 cut(s)	269
Hin1II	CATG	3 cut(s)	38, 289, 368
HindIII	AAGCTT	2 cut(s)	150, 530
HinfI	GANTC	1 cut(s)	470
Hpy166II	GTNNAC	2 cut(s)	91, 389
Hpy188III	TCNNGA	1 cut(s)	242
Hpy8I	GTNNAC	2 cut(s)	91, 389
HpyAV	CCTTC	3 cut(s)	182, 239, 410
HpyCH4V	TGCA	3 cut(s)	254, 368, 455
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 300
HpyF3I	CTNAG	1 cut(s)	110
Hsp92II	CATG	3 cut(s)	38, 289, 368
Kzo9I	GATC	1 cut(s)	238
LguI	GCTCTTC	1 cut(s)	393
LmnI	GCTCC	2 cut(s)	182, 308
LpnPI	CCDG	3 cut(s)	207, 459, 513
Lsp1109I	GCAGC	2 cut(s)	436, 439
LweI	GCATC	1 cut(s)	241
MaeI	CTAG	2 cut(s)	291, 544
MaeIII	GTNAC	2 cut(s)	17, 316
MalI	GATC	1 cut(s)	240
MboI	GATC	1 cut(s)	238
MboII	GAAGA	2 cut(s)	221, 410
MhlI	GDGCHC	1 cut(s)	486
MluCI	AATT	5 cut(s)	230, 411, 456, 477, 505
MnlI	CCTC	1 cut(s)	377
MseI	TTAA	4 cut(s)	84, 117, 509, 537
MwoI	GCNNNNNNNGC	2 cut(s)	260, 300
NdeII	GATC	1 cut(s)	238
NheI	GCTAGC	1 cut(s)	290
NlaIII	CATG	3 cut(s)	38, 289, 368
NlaIV	GGNNCC	1 cut(s)	32
NmuCI	GTSAC	2 cut(s)	17, 316
PciSI	GCTCTTC	1 cut(s)	393
PfeI	GAWTC	1 cut(s)	470
PkrI	GCNGC	2 cut(s)	451, 454
PpuMI	RGGWCCY	1 cut(s)	191
Psp124BI	GAGCTC	1 cut(s)	486
Psp5II	RGGWCCY	1 cut(s)	191
PspN4I	GGNNCC	1 cut(s)	32
PspPI	GGNCC	1 cut(s)	191
PspPPI	RGGWCCY	1 cut(s)	191
RsaI	GTAC	1 cut(s)	351
RsaNI	GTAC	1 cut(s)	350
SacI	GAGCTC	1 cut(s)	486
SapI	GCTCTTC	1 cut(s)	393
SaqAI	TTAA	4 cut(s)	84, 117, 509, 537
SatI	GCNGC	2 cut(s)	450, 453
Sau3AI	GATC	1 cut(s)	238
Sau96I	GGNCC	1 cut(s)	191
ScaI	AGTACT	1 cut(s)	351
SduI	GDGCHC	1 cut(s)	486
SfaNI	GCATC	1 cut(s)	241
SinI	GGWCC	1 cut(s)	191
SmlI	CTYRAG	2 cut(s)	13, 440
SmoI	CTYRAG	2 cut(s)	13, 440
Sse9I	AATT	5 cut(s)	230, 411, 456, 477, 505
SsiI	CCGC	1 cut(s)	203
SspMI	CTAG	2 cut(s)	291, 544
SstI	GAGCTC	1 cut(s)	486
TaqI	TCGA	1 cut(s)	396
TasI	AATT	5 cut(s)	230, 411, 456, 477, 505
TatI	WGTACW	1 cut(s)	349
TfiI	GAWTC	1 cut(s)	470
Tru1I	TTAA	4 cut(s)	84, 117, 509, 537
Tru9I	TTAA	4 cut(s)	84, 117, 509, 537
TseFI	GTSAC	2 cut(s)	17, 316
TseI	GCWGC	2 cut(s)	449, 452
Tsp45I	GTSAC	2 cut(s)	17, 316
TspDTI	ATGAA	7 cut(s)	51, 115, 119, 222, 243, 356, 422
VpaK11BI	GGWCC	1 cut(s)	191
XapI	RAATTY	1 cut(s)	230
XcmI	CCANNNNNNNNNTGG	1 cut(s)	328
XspI	CTAG	2 cut(s)	291, 544
ZrmI	AGTACT	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.