Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001154

Physical Location & Seq

Genomic Coordinates Reverse (-)

5239825 .. 5240689

Gene Structure 865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G003280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGTTGTTTGTGAAAAACAAGTTTATGACGATTGGGTTAAGGTTCACAAGGAAGCCAAAGGATTAAGACTTAAACCATTCATTCATTATGATAGTTTGGTGGAAGCTTTTGGGAGAGATAGAGCCAATGGGTTAGGAGCTGAAGGGCCTGCAGAAGCTGATGAAGATGTGAATAATGATAATGAATTTGTTGATCTTGAAGGACCTGCAGAAGCTGAAAATATTGTTCCTACACCTGCTACTAGTACAACTTCCTCTGCTTCTAATTCAACCCGGACTAGAAAGCGATCAAGGGACGCTTATGCTCAATGCTTGGGAGACATGGCTAGCACACTTCGCTCTTTTGTGGATGTGACCAAGACACACTTGGAGACTATGAAAGAAGTACTTTTGAATGACCATGCAGCATCTACAAAAAGAGGTAAACTTGTCGAAGAGCTTATGAAAATTGAAGGTTTGAATGATTATGATGTGCTTGAGGCTGCTGCTATAATAATTGGCGATGACTCCAAAATTGAGCTCTTGTTTAGCTTACCTGACAATTTGAAGAGCCAATGGATTTACAAGCTTCTGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

192

Amino Acids

21.33

Weight (kDa)

4.84

Isoelectric Point (pI)

41.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001154)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g08194
prunus_persica	Prupe.4G257700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0343671 RchiOBHm_Chr5g0072391 RchiOBHm_Chr6g0274461 RchiOBHm_Chr6g0284621
rosa_laevigata	RLG00000001201 RLG00000008793 RLG00000013285 RLG00000013580 RLG00000015412 RLG00000020159 RLG00000022735 RLG00000029912 RLG00000030782 RLG00000032954
rosa_multiflora	Rmu_sc0000233.1_g000006 Rmu_sc0001240.1_g000006 Rmu_sc0002352.1_g000014 Rmu_sc0003882.1_g000036 Rmu_sc0004016.1_g000017 Rmu_sc0004698.1_g000002 Rmu_sc0006651.1_g000003 Rmu_sc0009984.1_g000002 Rmu_sc0010945.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083960 Rroxscaffold_2G00137540 Rroxscaffold_2G00137550 Rroxscaffold_3G00226540 Rroxscaffold_3G00276350 Rroxscaffold_7G00175350
rosa_rugosa	Rorug02G0052000 Rorug04G0314300 Rorug05G0057300 Rorug06G0033500
rosa_samantha	Rh1CG381500 Rh2DG003400 Rh3BG333400 Rh4AG123000 Rh4AG311600 Rh4AG339700 Rh4CG303900 Rh4CG334100 Rh5AG318400 Rh5BG324000 Rh6AG407700 Rh6BG340400 Rh7AG126300 Rh7CG042400 Rh7CG042500 Rh7CG154400 Rh7CG166300 Rh7CG315500
rosa_wichuraiana	Rw5G010820 Rw5G026590 Rw6G003280 Rw6G021230 Rw7G013220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	244
Acc36I	ACCTGC	2 cut(s)	214, 244
AcsI	RAATTY	1 cut(s)	185
AcuI	CTGAAG	1 cut(s)	162
AfaI	GTAC	2 cut(s)	247, 387
AgsI	TTSAA	6 cut(s)	200, 270, 394, 452, 460, 547
AhlI	ACTAGT	1 cut(s)	242
AluBI	AGCT	8 cut(s)	107, 140, 158, 215, 439, 520, 531, 568
AluI	AGCT	8 cut(s)	107, 140, 158, 215, 439, 520, 531, 568
Alw21I	GWGCWC	1 cut(s)	522
Alw26I	GTCTC	2 cut(s)	312, 365
AlwNI	CAGNNNCTG	2 cut(s)	158, 215
AoxI	GGCC	1 cut(s)	146
ApeKI	GCWGC	3 cut(s)	404, 482, 485
ApoI	RAATTY	1 cut(s)	185
AspS9I	GGNCC	2 cut(s)	146, 203
AsuC2I	CCSGG	1 cut(s)	274
AsuNHI	GCTAGC	1 cut(s)	326
AvaII	GGWCC	1 cut(s)	203
BanII	GRGCYC	1 cut(s)	522
Bbv12I	GWGCWC	1 cut(s)	522
BbvI	GCAGC	3 cut(s)	416, 469, 472
BcnI	CCSGG	1 cut(s)	274
BcoDI	GTCTC	2 cut(s)	312, 365
BcuI	ACTAGT	1 cut(s)	242
BfaI	CTAG	4 cut(s)	243, 279, 327, 577
BfmI	CTRYAG	2 cut(s)	150, 207
BfuAI	ACCTGC	2 cut(s)	214, 244
BisI	GCNGC	3 cut(s)	405, 483, 486
BlsI	GCNGC	3 cut(s)	406, 484, 487
BmcAI	AGTACT	1 cut(s)	387
Bme1390I	CCNGG	1 cut(s)	274
Bme18I	GGWCC	1 cut(s)	203
BmgT120I	GGNCC	2 cut(s)	146, 203
BmrFI	CCNGG	1 cut(s)	274
BmsI	GCATC	1 cut(s)	416
BmtI	GCTAGC	1 cut(s)	330
BpuEI	CTTGAG	1 cut(s)	497
BpuMI	CCSGG	1 cut(s)	274
BseGI	GGATG	1 cut(s)	355
BseXI	GCAGC	3 cut(s)	416, 469, 472
BshFI	GGCC	1 cut(s)	148
BsiHKAI	GWGCWC	1 cut(s)	522
BsiSI	CCGG	1 cut(s)	274
BslFI	GGGAC	1 cut(s)	308
BsmAI	GTCTC	2 cut(s)	312, 365
BsmFI	GGGAC	1 cut(s)	308
BsnI	GGCC	1 cut(s)	148
Bsp1286I	GDGCHC	1 cut(s)	522
Bsp143I	GATC	2 cut(s)	193, 287
BspANI	GGCC	1 cut(s)	148
BspMAI	CTGCAG	2 cut(s)	154, 211
BspMI	ACCTGC	2 cut(s)	214, 244
BspOI	GCTAGC	1 cut(s)	330
BspQI	GCTCTTC	2 cut(s)	429, 542
BssMI	GATC	2 cut(s)	193, 287
Bst6I	CTCTTC	2 cut(s)	429, 542
BstC8I	GCNNGC	2 cut(s)	150, 328
BstF5I	GGATG	1 cut(s)	355
BstKTI	GATC	2 cut(s)	196, 290
BstMAI	GTCTC	2 cut(s)	312, 365
BstMBI	GATC	2 cut(s)	193, 287
BstMWI	GCNNNNNNNGC	1 cut(s)	336
BstSCI	CCNGG	1 cut(s)	272
BstSFI	CTRYAG	2 cut(s)	150, 207
BstV1I	GCAGC	3 cut(s)	416, 469, 472
BsuRI	GGCC	1 cut(s)	148
BtgZI	GCGATG	1 cut(s)	516
BtsCI	GGATG	1 cut(s)	355
BveI	ACCTGC	2 cut(s)	214, 244
Cac8I	GCNNGC	2 cut(s)	150, 328
CaiI	CAGNNNCTG	2 cut(s)	158, 215
Cfr13I	GGNCC	2 cut(s)	146, 203
CseI	GACGC	1 cut(s)	305
Csp6I	GTAC	2 cut(s)	246, 386
CviAII	CATG	2 cut(s)	322, 401
CviQI	GTAC	2 cut(s)	246, 386
DpnI	GATC	2 cut(s)	195, 289
DpnII	GATC	2 cut(s)	193, 287
Eam1104I	CTCTTC	2 cut(s)	429, 542
EarI	CTCTTC	2 cut(s)	429, 542
Ecl136II	GAGCTC	1 cut(s)	520
Eco24I	GRGCYC	1 cut(s)	522
Eco47I	GGWCC	1 cut(s)	203
Eco53kI	GAGCTC	1 cut(s)	520
Eco57I	CTGAAG	1 cut(s)	162
EcoICRI	GAGCTC	1 cut(s)	520
EcoO109I	RGGNCCY	2 cut(s)	146, 203
EcoT38I	GRGCYC	1 cut(s)	522
FaeI	CATG	2 cut(s)	325, 404
FaiI	YATR	9 cut(s)	27, 90, 303, 323, 377, 402, 443, 468, 491
FalI	AAGNNNNNCTT	6 cut(s)	283, 315, 350, 382, 372, 404
FaqI	GGGAC	1 cut(s)	308
FatI	CATG	2 cut(s)	321, 400
Fnu4HI	GCNGC	3 cut(s)	405, 483, 486
FokI	GGATG	1 cut(s)	362
FriOI	GRGCYC	1 cut(s)	522
Fsp4HI	GCNGC	3 cut(s)	405, 483, 486
FspBI	CTAG	4 cut(s)	243, 279, 327, 577
GluI	GCNGC	3 cut(s)	405, 483, 486
HaeIII	GGCC	1 cut(s)	148
HapII	CCGG	1 cut(s)	274
HgaI	GACGC	1 cut(s)	305
Hin1II	CATG	2 cut(s)	325, 404
HindIII	AAGCTT	2 cut(s)	105, 566
HinfI	GANTC	1 cut(s)	506
HpaII	CCGG	1 cut(s)	274
Hpy166II	GTNNAC	2 cut(s)	46, 425
Hpy188I	TCNGA	1 cut(s)	573
Hpy188III	TCNNGA	1 cut(s)	197
Hpy8I	GTNNAC	2 cut(s)	46, 425
HpyAV	CCTTC	3 cut(s)	137, 194, 446
HpyCH4V	TGCA	3 cut(s)	152, 209, 404
HpyF10VI	GCNNNNNNNGC	1 cut(s)	336
Hsp92II	CATG	2 cut(s)	325, 404
Kzo9I	GATC	2 cut(s)	193, 287
LguI	GCTCTTC	2 cut(s)	429, 542
LmnI	GCTCC	1 cut(s)	137
LpnPI	CCDG	5 cut(s)	162, 219, 249, 287, 549
Lsp1109I	GCAGC	3 cut(s)	416, 469, 472
LweI	GCATC	1 cut(s)	416
MaeI	CTAG	4 cut(s)	243, 279, 327, 577
MaeIII	GTNAC	1 cut(s)	352
MalI	GATC	2 cut(s)	195, 289
MboI	GATC	2 cut(s)	193, 287
MboII	GAAGA	3 cut(s)	176, 446, 559
MhlI	GDGCHC	1 cut(s)	522
MluCI	AATT	6 cut(s)	185, 265, 447, 495, 513, 541
MlyI	GAGTC	1 cut(s)	500
MnlI	CCTC	3 cut(s)	265, 413, 472
MseI	TTAA	3 cut(s)	39, 65, 72
MspI	CCGG	1 cut(s)	274
MspR9I	CCNGG	1 cut(s)	274
MwoI	GCNNNNNNNGC	1 cut(s)	336
NciI	CCSGG	1 cut(s)	274
NdeII	GATC	2 cut(s)	193, 287
NheI	GCTAGC	1 cut(s)	326
NlaIII	CATG	2 cut(s)	325, 404
NmuCI	GTSAC	1 cut(s)	352
PaqCI	CACCTGC	1 cut(s)	244
PciSI	GCTCTTC	2 cut(s)	429, 542
PkrI	GCNGC	3 cut(s)	406, 484, 487
PleI	GAGTC	1 cut(s)	500
PpsI	GAGTC	1 cut(s)	500
PpuMI	RGGWCCY	1 cut(s)	203
Psp124BI	GAGCTC	1 cut(s)	522
Psp5II	RGGWCCY	1 cut(s)	203
PspPI	GGNCC	2 cut(s)	146, 203
PspPPI	RGGWCCY	1 cut(s)	203
PstI	CTGCAG	2 cut(s)	154, 211
PstNI	CAGNNNCTG	2 cut(s)	158, 215
RsaI	GTAC	2 cut(s)	247, 387
RsaNI	GTAC	2 cut(s)	246, 386
SacI	GAGCTC	1 cut(s)	522
SapI	GCTCTTC	2 cut(s)	429, 542
SaqAI	TTAA	3 cut(s)	39, 65, 72
SatI	GCNGC	3 cut(s)	405, 483, 486
Sau3AI	GATC	2 cut(s)	193, 287
Sau96I	GGNCC	2 cut(s)	146, 203
ScaI	AGTACT	1 cut(s)	387
SchI	GAGTC	1 cut(s)	500
ScrFI	CCNGG	1 cut(s)	274
SduI	GDGCHC	1 cut(s)	522
SfaNI	GCATC	1 cut(s)	416
SfcI	CTRYAG	2 cut(s)	150, 207
SinI	GGWCC	1 cut(s)	203
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
SpeI	ACTAGT	1 cut(s)	242
Sse9I	AATT	6 cut(s)	185, 265, 447, 495, 513, 541
SspI	AATATT	1 cut(s)	223
SspMI	CTAG	4 cut(s)	243, 279, 327, 577
SstI	GAGCTC	1 cut(s)	522
StyD4I	CCNGG	1 cut(s)	272
TaqI	TCGA	1 cut(s)	432
TasI	AATT	6 cut(s)	185, 265, 447, 495, 513, 541
TatI	WGTACW	2 cut(s)	245, 385
Tru1I	TTAA	3 cut(s)	39, 65, 72
Tru9I	TTAA	3 cut(s)	39, 65, 72
TseFI	GTSAC	1 cut(s)	352
TseI	GCWGC	3 cut(s)	404, 482, 485
Tsp45I	GTSAC	1 cut(s)	352
TspDTI	ATGAA	6 cut(s)	70, 74, 177, 198, 392, 458
VpaK11BI	GGWCC	1 cut(s)	203
XapI	RAATTY	1 cut(s)	185
XcmI	CCANNNNNNNNNTGG	1 cut(s)	364
XspI	CTAG	4 cut(s)	243, 279, 327, 577
ZrmI	AGTACT	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.