RLG00000001201
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001154
Physical Location & Seq
Forward (+)
11852143 .. 11854821
2679 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001201

Sequence Viewer

Length: 666 bp
ATGCCGCCAAAGGTCTACACAAATATGGCACCCAAAAGGGCAAAACCGAGCAGCTCCAGTAACTCTGATGGAGGTGCCCGAAAGAGTTCTCGACTGGCGGCCCATAAACCGAGCAGCTCCACAACAATCTCCGATGGAGGCCCCCGAAAGAGTACTAAAATCGCCGCCTCTAAAGCATCGGCTTCAGCGACGGTCTCTGAGGTCTCGAACCAAAATTATGTTGGCGGCACCGAAGTGGTGTGGTTAAGAAGCCAAAGAGGTGAAGGATCGAAAGAAGCTCATCATGAAGAAGAAAGCCTCCAGTCGTTCCATGAGCTTTTGAACTATCTGAATGTGATAGAGAGGTGTTTCGGGTTGCTTAAGTTACTTTGGGCACGAGATGCTTATTCTCAATGTTTGAGAGACATGGCTAGCACACTACGCTCCTTTGTGGATGTGACCAAGGCACACTTGGAGACAATGCAAGGAGTACTCATGAATGAGCATGCAACATCTGAAAGAAGAGGTAAGCTTGTTGACGAGCTTATGAAAATTGAAGGCATAAATGACTATGATGTTATAGAAGCTGCTGCTGCAATTATTGGTGATGACTCCAAAATTGACCTTTTGTTTAGTTTGCCAGACAACCTCAAAAGTCAATGGATTCATAAACTTCTTAGTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

222

Amino Acids

24.27

Weight (kDa)

7.75

Isoelectric Point (pI)

48.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 28, 74, 227
AccI GTMKAC 1 cut(s) 15
AciI CCGC 4 cut(s) 5, 98, 165, 225
AclWI GGATC 1 cut(s) 274
AcuI CTGAAG 1 cut(s) 168
AfaI GTAC 2 cut(s) 154, 471
AflII CTTAAG 1 cut(s) 359
AgsI TTSAA 2 cut(s) 322, 536
AleI CACNNNNGTG 1 cut(s) 233
AluBI AGCT 7 cut(s) 54, 117, 278, 316, 511, 523, 566
AluI AGCT 7 cut(s) 54, 117, 278, 316, 511, 523, 566
Alw26I GTCTC 4 cut(s) 199, 208, 396, 449
AlwI GGATC 1 cut(s) 274
AoxI GGCC 2 cut(s) 99, 139
ApeKI GCWGC 5 cut(s) 51, 114, 566, 569, 572
Asp700I GAANNNNTTC 1 cut(s) 85
AspS9I GGNCC 2 cut(s) 100, 140
AsuHPI GGTGA 2 cut(s) 272, 596
AsuNHI GCTAGC 1 cut(s) 410
BaeGI GKGCMC 2 cut(s) 79, 376
BanI GGYRCC 3 cut(s) 28, 74, 227
BauI CACGAG 1 cut(s) 375
BbvI GCAGC 5 cut(s) 63, 126, 553, 556, 559
BccI CCATC 2 cut(s) 62, 128
BcoDI GTCTC 4 cut(s) 199, 208, 396, 449
BfaI CTAG 1 cut(s) 411
BfrI CTTAAG 1 cut(s) 359
BisI GCNGC 9 cut(s) 5, 52, 99, 115, 165, 226, 567, 570, 573
BlsI GCNGC 9 cut(s) 6, 53, 100, 116, 166, 227, 568, 571, 574
BmcAI AGTACT 2 cut(s) 154, 471
BmgT120I GGNCC 2 cut(s) 100, 140
BmiI GGNNCC 4 cut(s) 30, 76, 142, 229
BmsI GCATC 2 cut(s) 185, 370
BmtI GCTAGC 1 cut(s) 414
BpmI CTGGAG 2 cut(s) 40, 284
BsaI GGTCTC 2 cut(s) 199, 208
BsaJI CCNNGG 1 cut(s) 441
Bse1I ACTGG 3 cut(s) 57, 99, 301
BseDI CCNNGG 1 cut(s) 441
BseGI GGATG 1 cut(s) 439
BseMII CTCAG 1 cut(s) 189
BseNI ACTGG 3 cut(s) 57, 99, 301
BseSI GKGCMC 2 cut(s) 79, 376
BseXI GCAGC 5 cut(s) 63, 126, 553, 556, 559
BshFI GGCC 2 cut(s) 101, 141
BshNI GGYRCC 3 cut(s) 28, 74, 227
BsmAI GTCTC 4 cut(s) 199, 208, 396, 449
BsnI GGCC 2 cut(s) 101, 141
Bso31I GGTCTC 2 cut(s) 199, 208
Bsp1286I GDGCHC 2 cut(s) 79, 376
Bsp143I GATC 1 cut(s) 266
BspACI CCGC 4 cut(s) 5, 98, 165, 225
BspANI GGCC 2 cut(s) 101, 141
BspCNI CTCAG 1 cut(s) 190
BspHI TCATGA 2 cut(s) 283, 474
BspLI GGNNCC 4 cut(s) 30, 76, 142, 229
BspOI GCTAGC 1 cut(s) 414
BspPI GGATC 1 cut(s) 274
BspT107I GGYRCC 3 cut(s) 28, 74, 227
BspTI CTTAAG 1 cut(s) 359
BspTNI GGTCTC 2 cut(s) 199, 208
BsrI ACTGG 3 cut(s) 57, 99, 301
BssECI CCNNGG 1 cut(s) 441
BssMI GATC 1 cut(s) 266
BssSI CACGAG 1 cut(s) 375
BssT1I CCWWGG 1 cut(s) 441
Bst2BI CACGAG 1 cut(s) 375
Bst4CI ACNGT 1 cut(s) 193
Bst6I CTCTTC 1 cut(s) 496
BstAFI CTTAAG 1 cut(s) 359
BstAPI GCANNNNNTGC 1 cut(s) 380
BstC8I GCNNGC 2 cut(s) 412, 486
BstDEI CTNAG 2 cut(s) 198, 656
BstF5I GGATG 1 cut(s) 439
BstKTI GATC 1 cut(s) 269
BstMAI GTCTC 4 cut(s) 199, 208, 396, 449
BstMBI GATC 1 cut(s) 266
BstMWI GCNNNNNNNGC 4 cut(s) 173, 380, 420, 572
BstNSI RCATGY 1 cut(s) 488
BstSLI GKGCMC 2 cut(s) 79, 376
BstV1I GCAGC 5 cut(s) 63, 126, 553, 556, 559
BsuRI GGCC 2 cut(s) 101, 141
BtsCI GGATG 1 cut(s) 439
Cac8I GCNNGC 2 cut(s) 412, 486
CciI TCATGA 2 cut(s) 283, 474
Cfr13I GGNCC 2 cut(s) 100, 140
Csp6I GTAC 2 cut(s) 153, 470
CviAII CATG 5 cut(s) 284, 311, 406, 475, 485
CviQI GTAC 2 cut(s) 153, 470
DdeI CTNAG 2 cut(s) 198, 656
DpnI GATC 1 cut(s) 268
DpnII GATC 1 cut(s) 266
Eam1104I CTCTTC 1 cut(s) 496
EarI CTCTTC 1 cut(s) 496
Eco130I CCWWGG 1 cut(s) 441
Eco31I GGTCTC 2 cut(s) 199, 208
Eco57I CTGAAG 1 cut(s) 168
EcoO109I RGGNCCY 1 cut(s) 140
EcoT14I CCWWGG 1 cut(s) 441
ErhI CCWWGG 1 cut(s) 441
FaeI CATG 5 cut(s) 287, 314, 409, 478, 488
FalI AAGNNNNNCTT 2 cut(s) 434, 466
FatI CATG 5 cut(s) 283, 310, 405, 474, 484
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 9 cut(s) 5, 52, 99, 115, 165, 226, 567, 570, 573
FokI GGATG 1 cut(s) 446
Fsp4HI GCNGC 9 cut(s) 5, 52, 99, 115, 165, 226, 567, 570, 573
FspBI CTAG 1 cut(s) 411
GluI GCNGC 9 cut(s) 5, 52, 99, 115, 165, 226, 567, 570, 573
GsuI CTGGAG 2 cut(s) 40, 284
HaeIII GGCC 2 cut(s) 101, 141
Hin1II CATG 5 cut(s) 287, 314, 409, 478, 488
HincII GTYRAC 1 cut(s) 517
HindII GTYRAC 1 cut(s) 517
HindIII AAGCTT 1 cut(s) 509
HinfI GANTC 2 cut(s) 590, 643
HphI GGTGA 2 cut(s) 272, 596
Hpy166II GTNNAC 2 cut(s) 16, 517
Hpy188I TCNGA 5 cut(s) 67, 133, 199, 330, 496
Hpy188III TCNNGA 4 cut(s) 90, 205, 284, 475
Hpy8I GTNNAC 2 cut(s) 16, 517
Hpy99I CGWCG 1 cut(s) 193
HpyAV CCTTC 2 cut(s) 257, 530
HpyCH4III ACNGT 1 cut(s) 193
HpyCH4V TGCA 3 cut(s) 463, 488, 575
HpyF10VI GCNNNNNNNGC 4 cut(s) 173, 380, 420, 572
HpyF3I CTNAG 2 cut(s) 198, 656
Hsp92II CATG 5 cut(s) 287, 314, 409, 478, 488
Kzo9I GATC 1 cut(s) 266
LmnI GCTCC 3 cut(s) 59, 122, 428
LpnPI CCDG 4 cut(s) 70, 80, 314, 633
Lsp1109I GCAGC 5 cut(s) 63, 126, 553, 556, 559
LweI GCATC 2 cut(s) 185, 370
MaeI CTAG 1 cut(s) 411
MaeIII GTNAC 3 cut(s) 59, 363, 436
MalI GATC 1 cut(s) 268
MboI GATC 1 cut(s) 266
MboII GAAGA 3 cut(s) 299, 302, 513
MhlI GDGCHC 2 cut(s) 79, 376
MluCI AATT 4 cut(s) 214, 531, 576, 597
MlyI GAGTC 1 cut(s) 584
MnlI CCTC 9 cut(s) 65, 131, 178, 193, 251, 308, 336, 497, 638
MroXI GAANNNNTTC 1 cut(s) 85
MseI TTAA 2 cut(s) 245, 360
MslI CAYNNNNRTG 2 cut(s) 23, 233
MspCI CTTAAG 1 cut(s) 359
MwoI GCNNNNNNNGC 4 cut(s) 173, 380, 420, 572
NdeII GATC 1 cut(s) 266
NheI GCTAGC 1 cut(s) 410
NlaIII CATG 5 cut(s) 287, 314, 409, 478, 488
NlaIV GGNNCC 4 cut(s) 30, 76, 142, 229
NmuCI GTSAC 1 cut(s) 436
NspI RCATGY 1 cut(s) 488
OliI CACNNNNGTG 1 cut(s) 233
PaeI GCATGC 1 cut(s) 488
PagI TCATGA 2 cut(s) 283, 474
PcsI WCGNNNNNNNCGW 1 cut(s) 185
PdmI GAANNNNTTC 1 cut(s) 85
PfeI GAWTC 1 cut(s) 643
PkrI GCNGC 9 cut(s) 6, 53, 100, 116, 166, 227, 568, 571, 574
PleI GAGTC 1 cut(s) 584
PpsI GAGTC 1 cut(s) 584
PspN4I GGNNCC 4 cut(s) 30, 76, 142, 229
PspPI GGNCC 2 cut(s) 100, 140
RsaI GTAC 2 cut(s) 154, 471
RsaNI GTAC 2 cut(s) 153, 470
RseI CAYNNNNRTG 2 cut(s) 23, 233
SaqAI TTAA 2 cut(s) 245, 360
SatI GCNGC 9 cut(s) 5, 52, 99, 115, 165, 226, 567, 570, 573
Sau3AI GATC 1 cut(s) 266
Sau96I GGNCC 2 cut(s) 100, 140
ScaI AGTACT 2 cut(s) 154, 471
SchI GAGTC 1 cut(s) 584
SduI GDGCHC 2 cut(s) 79, 376
SfaNI GCATC 2 cut(s) 185, 370
SmiMI CAYNNNNRTG 2 cut(s) 23, 233
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
SphI GCATGC 1 cut(s) 488
Sse9I AATT 4 cut(s) 214, 531, 576, 597
SsiI CCGC 4 cut(s) 5, 98, 165, 225
SspMI CTAG 1 cut(s) 411
StyI CCWWGG 1 cut(s) 441
TaaI ACNGT 1 cut(s) 193
TaqI TCGA 3 cut(s) 91, 206, 269
TasI AATT 4 cut(s) 214, 531, 576, 597
TatI WGTACW 2 cut(s) 152, 469
TauI GCSGC 4 cut(s) 7, 101, 167, 228
TfiI GAWTC 1 cut(s) 643
Tru1I TTAA 2 cut(s) 245, 360
Tru9I TTAA 2 cut(s) 245, 360
TseFI GTSAC 1 cut(s) 436
TseI GCWGC 5 cut(s) 51, 114, 566, 569, 572
Tsp45I GTSAC 1 cut(s) 436
TspDTI ATGAA 4 cut(s) 300, 491, 542, 635
Vha464I CTTAAG 1 cut(s) 359
XceI RCATGY 1 cut(s) 488
XcmI CCANNNNNNNNNTGG 2 cut(s) 218, 448
XmiI GTMKAC 1 cut(s) 15
XmnI GAANNNNTTC 1 cut(s) 85
XspI CTAG 1 cut(s) 411
ZrmI AGTACT 2 cut(s) 154, 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.