Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002352.1

Orthogroup ID

OG0001154

Physical Location & Seq

Genomic Coordinates Forward (+)

70191 .. 71915

Gene Structure 1725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002352.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

atggcaattgatcccttagaaaatgaactgaatgccactgtgaataaccaagatgatgatgatgatgatataatcaattttatcgactcatcagaacaatggaatgactggagaagagagatggatttgcaagcaaactcaagatcctcaactgctagaagtggaagaaataaagagaagcaaccatcacacacctggacccctattgaagatgtagctctagttgaggctttgactgaactttgtgtttctggggttcacaaggaagccaaaggactaagacttaaaccattcattcattatgatagtttggtggaagcttttaggagaaatagagccaatgggttaggagctgaaggacctgcagaagctgatgaagatgtgaataatgataatgaatttgttgatcttgaaggacctgcagaagctgaaaatattgttcctgcacctgctactcgtacaacttcctctgcttctaattcaactcggactagaaagcgtgcaagggacgcttatgctcaatgcttgggagacatggctagcacacttccctcctttgtggatgtgaccaagacacacttggagactatgaaagaagtacttttgaatgaccatgcagcatctacaaaaagaggtaaacttgtcgaagagcttatgaaaattgaaggtttgaatgattatgatgtgcttgaggctgctgctttaattattggcgatgactccaaaattgagctcttgtttagcttacctgacaatttgaagagccaatggatttacaaacttctgaaccagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

264

Amino Acids

29.44

Weight (kDa)

4.61

Isoelectric Point (pI)

49.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001154)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g08194
prunus_persica	Prupe.4G257700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0343671 RchiOBHm_Chr5g0072391 RchiOBHm_Chr6g0274461 RchiOBHm_Chr6g0284621
rosa_laevigata	RLG00000001201 RLG00000008793 RLG00000013285 RLG00000013580 RLG00000015412 RLG00000020159 RLG00000022735 RLG00000029912 RLG00000030782 RLG00000032954
rosa_multiflora	Rmu_sc0000233.1_g000006 Rmu_sc0001240.1_g000006 Rmu_sc0002352.1_g000014 Rmu_sc0003882.1_g000036 Rmu_sc0004016.1_g000017 Rmu_sc0004698.1_g000002 Rmu_sc0006651.1_g000003 Rmu_sc0009984.1_g000002 Rmu_sc0010945.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083960 Rroxscaffold_2G00137540 Rroxscaffold_2G00137550 Rroxscaffold_3G00226540 Rroxscaffold_3G00276350 Rroxscaffold_7G00175350
rosa_rugosa	Rorug02G0052000 Rorug04G0314300 Rorug05G0057300 Rorug06G0033500
rosa_samantha	Rh1CG381500 Rh2DG003400 Rh3BG333400 Rh4AG123000 Rh4AG311600 Rh4AG339700 Rh4CG303900 Rh4CG334100 Rh5AG318400 Rh5BG324000 Rh6AG407700 Rh6BG340400 Rh7AG126300 Rh7CG042400 Rh7CG042500 Rh7CG154400 Rh7CG166300 Rh7CG315500
rosa_wichuraiana	Rw5G010820 Rw5G026590 Rw6G003280 Rw6G021230 Rw7G013220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	457
Acc36I	ACCTGC	3 cut(s)	370, 427, 457
AclWI	GGATC	2 cut(s)	5, 138
AcsI	RAATTY	1 cut(s)	398
AcuI	CTGAAG	1 cut(s)	375
AfaI	GTAC	2 cut(s)	460, 600
AgsI	TTSAA	7 cut(s)	209, 413, 483, 607, 665, 673, 760
AjnI	CCWGG	1 cut(s)	194
AluBI	AGCT	8 cut(s)	218, 320, 353, 371, 428, 652, 733, 744
AluI	AGCT	8 cut(s)	218, 320, 353, 371, 428, 652, 733, 744
Alw21I	GWGCWC	1 cut(s)	735
Alw26I	GTCTC	2 cut(s)	525, 578
AlwI	GGATC	2 cut(s)	5, 138
AlwNI	CAGNNNCTG	2 cut(s)	371, 428
ApeKI	GCWGC	3 cut(s)	617, 695, 698
ApoI	RAATTY	1 cut(s)	398
AspS9I	GGNCC	3 cut(s)	198, 359, 416
AsuNHI	GCTAGC	1 cut(s)	539
AvaII	GGWCC	3 cut(s)	198, 359, 416
BanII	GRGCYC	1 cut(s)	735
Bbv12I	GWGCWC	1 cut(s)	735
BbvI	GCAGC	3 cut(s)	629, 682, 685
BccI	CCATC	2 cut(s)	115, 193
BciT130I	CCWGG	1 cut(s)	196
BcoDI	GTCTC	2 cut(s)	525, 578
BfaI	CTAG	4 cut(s)	156, 221, 492, 540
BfmI	CTRYAG	2 cut(s)	363, 420
BfuAI	ACCTGC	3 cut(s)	370, 427, 457
BisI	GCNGC	3 cut(s)	618, 696, 699
BlsI	GCNGC	3 cut(s)	619, 697, 700
BmcAI	AGTACT	1 cut(s)	600
Bme1390I	CCNGG	1 cut(s)	196
Bme18I	GGWCC	3 cut(s)	198, 359, 416
BmgT120I	GGNCC	3 cut(s)	198, 359, 416
BmiI	GGNNCC	1 cut(s)	200
BmrFI	CCNGG	1 cut(s)	196
BmsI	GCATC	1 cut(s)	629
BmtI	GCTAGC	1 cut(s)	543
BpmI	CTGGAG	1 cut(s)	130
BpuEI	CTTGAG	2 cut(s)	124, 710
Bse1I	ACTGG	2 cut(s)	113, 790
BseBI	CCWGG	1 cut(s)	196
BseGI	GGATG	1 cut(s)	568
BseNI	ACTGG	2 cut(s)	113, 790
BseXI	GCAGC	3 cut(s)	629, 682, 685
BsgI	GTGCAG	1 cut(s)	429
BsiHKAI	GWGCWC	1 cut(s)	735
BslFI	GGGAC	1 cut(s)	521
BsmAI	GTCTC	2 cut(s)	525, 578
BsmFI	GGGAC	1 cut(s)	521
BsmI	GAATGC	1 cut(s)	37
Bsp1286I	GDGCHC	1 cut(s)	735
Bsp143I	GATC	3 cut(s)	10, 143, 406
BspLI	GGNNCC	1 cut(s)	200
BspMAI	CTGCAG	2 cut(s)	367, 424
BspMI	ACCTGC	3 cut(s)	370, 427, 457
BspOI	GCTAGC	1 cut(s)	543
BspPI	GGATC	2 cut(s)	5, 138
BspQI	GCTCTTC	2 cut(s)	642, 755
BsrI	ACTGG	2 cut(s)	113, 790
BssMI	GATC	3 cut(s)	10, 143, 406
Bst2UI	CCWGG	1 cut(s)	196
Bst4CI	ACNGT	1 cut(s)	40
Bst6I	CTCTTC	3 cut(s)	109, 642, 755
BstC8I	GCNNGC	3 cut(s)	132, 501, 541
BstDEI	CTNAG	2 cut(s)	16, 278
BstF5I	GGATG	1 cut(s)	568
BstKTI	GATC	3 cut(s)	13, 146, 409
BstMAI	GTCTC	2 cut(s)	525, 578
BstMBI	GATC	3 cut(s)	10, 143, 406
BstMWI	GCNNNNNNNGC	1 cut(s)	509
BstNI	CCWGG	1 cut(s)	196
BstSCI	CCNGG	1 cut(s)	194
BstSFI	CTRYAG	2 cut(s)	363, 420
BstV1I	GCAGC	3 cut(s)	629, 682, 685
BstX2I	RGATCY	1 cut(s)	143
BstYI	RGATCY	1 cut(s)	143
BtgZI	GCGATG	1 cut(s)	729
BtsCI	GGATG	1 cut(s)	568
BtsIMutI	CAGTG	1 cut(s)	36
BveI	ACCTGC	3 cut(s)	370, 427, 457
Cac8I	GCNNGC	3 cut(s)	132, 501, 541
CaiI	CAGNNNCTG	2 cut(s)	371, 428
Cfr13I	GGNCC	3 cut(s)	198, 359, 416
CseI	GACGC	1 cut(s)	518
Csp6I	GTAC	2 cut(s)	459, 599
CviAII	CATG	2 cut(s)	535, 614
CviQI	GTAC	2 cut(s)	459, 599
DdeI	CTNAG	2 cut(s)	16, 278
DpnI	GATC	3 cut(s)	12, 145, 408
DpnII	GATC	3 cut(s)	10, 143, 406
Eam1104I	CTCTTC	3 cut(s)	109, 642, 755
EarI	CTCTTC	3 cut(s)	109, 642, 755
Ecl136II	GAGCTC	1 cut(s)	733
Eco24I	GRGCYC	1 cut(s)	735
Eco47I	GGWCC	3 cut(s)	198, 359, 416
Eco53kI	GAGCTC	1 cut(s)	733
Eco57I	CTGAAG	1 cut(s)	375
EcoICRI	GAGCTC	1 cut(s)	733
EcoO109I	RGGNCCY	2 cut(s)	359, 416
EcoRII	CCWGG	1 cut(s)	194
EcoT38I	GRGCYC	1 cut(s)	735
FaeI	CATG	2 cut(s)	538, 617
FaiI	YATR	8 cut(s)	71, 303, 516, 536, 590, 615, 656, 681
FalI	AAGNNNNNCTT	6 cut(s)	496, 528, 563, 595, 585, 617
FaqI	GGGAC	1 cut(s)	521
FatI	CATG	2 cut(s)	534, 613
Fnu4HI	GCNGC	3 cut(s)	618, 696, 699
FokI	GGATG	1 cut(s)	575
FriOI	GRGCYC	1 cut(s)	735
Fsp4HI	GCNGC	3 cut(s)	618, 696, 699
FspBI	CTAG	4 cut(s)	156, 221, 492, 540
GluI	GCNGC	3 cut(s)	618, 696, 699
GsuI	CTGGAG	1 cut(s)	130
HgaI	GACGC	1 cut(s)	518
Hin1II	CATG	2 cut(s)	538, 617
HindIII	AAGCTT	1 cut(s)	318
HinfI	GANTC	2 cut(s)	86, 719
Hpy166II	GTNNAC	2 cut(s)	259, 638
Hpy188I	TCNGA	3 cut(s)	94, 489, 786
Hpy188III	TCNNGA	2 cut(s)	141, 410
Hpy8I	GTNNAC	2 cut(s)	259, 638
HpyAV	CCTTC	3 cut(s)	350, 407, 659
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4V	TGCA	6 cut(s)	130, 365, 422, 446, 503, 617
HpyF10VI	GCNNNNNNNGC	1 cut(s)	509
HpyF3I	CTNAG	2 cut(s)	16, 278
Hsp92II	CATG	2 cut(s)	538, 617
Kzo9I	GATC	3 cut(s)	10, 143, 406
LguI	GCTCTTC	2 cut(s)	642, 755
LmnI	GCTCC	1 cut(s)	350
LpnPI	CCDG	9 cut(s)	94, 181, 208, 237, 375, 432, 456, 462, 762
Lsp1109I	GCAGC	3 cut(s)	629, 682, 685
LweI	GCATC	1 cut(s)	629
MaeI	CTAG	4 cut(s)	156, 221, 492, 540
MaeIII	GTNAC	1 cut(s)	565
MalI	GATC	3 cut(s)	12, 145, 408
MboI	GATC	3 cut(s)	10, 143, 406
MboII	GAAGA	6 cut(s)	126, 177, 221, 389, 659, 772
MfeI	CAATTG	1 cut(s)	6
MflI	RGATCY	1 cut(s)	143
MhlI	GDGCHC	1 cut(s)	735
MluCI	AATT	8 cut(s)	6, 76, 398, 478, 660, 705, 726, 754
MlyI	GAGTC	2 cut(s)	80, 713
MnlI	CCTC	6 cut(s)	157, 220, 478, 562, 626, 685
MseI	TTAA	2 cut(s)	285, 704
MspR9I	CCNGG	1 cut(s)	196
MunI	CAATTG	1 cut(s)	6
Mva1269I	GAATGC	1 cut(s)	37
MvaI	CCWGG	1 cut(s)	196
MwoI	GCNNNNNNNGC	1 cut(s)	509
NdeII	GATC	3 cut(s)	10, 143, 406
NheI	GCTAGC	1 cut(s)	539
NlaIII	CATG	2 cut(s)	538, 617
NlaIV	GGNNCC	1 cut(s)	200
NmuCI	GTSAC	1 cut(s)	565
PaqCI	CACCTGC	1 cut(s)	457
PciSI	GCTCTTC	2 cut(s)	642, 755
PctI	GAATGC	1 cut(s)	37
PkrI	GCNGC	3 cut(s)	619, 697, 700
PleI	GAGTC	2 cut(s)	80, 713
PpsI	GAGTC	2 cut(s)	80, 713
PpuMI	RGGWCCY	2 cut(s)	359, 416
Psp124BI	GAGCTC	1 cut(s)	735
Psp5II	RGGWCCY	2 cut(s)	359, 416
Psp6I	CCWGG	1 cut(s)	194
PspGI	CCWGG	1 cut(s)	194
PspN4I	GGNNCC	1 cut(s)	200
PspPI	GGNCC	3 cut(s)	198, 359, 416
PspPPI	RGGWCCY	2 cut(s)	359, 416
PstI	CTGCAG	2 cut(s)	367, 424
PstNI	CAGNNNCTG	2 cut(s)	371, 428
PsuI	RGATCY	1 cut(s)	143
RsaI	GTAC	2 cut(s)	460, 600
RsaNI	GTAC	2 cut(s)	459, 599
SacI	GAGCTC	1 cut(s)	735
SapI	GCTCTTC	2 cut(s)	642, 755
SaqAI	TTAA	2 cut(s)	285, 704
SatI	GCNGC	3 cut(s)	618, 696, 699
Sau3AI	GATC	3 cut(s)	10, 143, 406
Sau96I	GGNCC	3 cut(s)	198, 359, 416
ScaI	AGTACT	1 cut(s)	600
SchI	GAGTC	2 cut(s)	80, 713
ScrFI	CCNGG	1 cut(s)	196
SduI	GDGCHC	1 cut(s)	735
SfaNI	GCATC	1 cut(s)	629
SfcI	CTRYAG	2 cut(s)	363, 420
SinI	GGWCC	3 cut(s)	198, 359, 416
SmlI	CTYRAG	2 cut(s)	139, 689
SmoI	CTYRAG	2 cut(s)	139, 689
Sse9I	AATT	8 cut(s)	6, 76, 398, 478, 660, 705, 726, 754
SspI	AATATT	1 cut(s)	436
SspMI	CTAG	4 cut(s)	156, 221, 492, 540
SstI	GAGCTC	1 cut(s)	735
StyD4I	CCNGG	1 cut(s)	194
TaaI	ACNGT	1 cut(s)	40
TaqI	TCGA	2 cut(s)	84, 645
TasI	AATT	8 cut(s)	6, 76, 398, 478, 660, 705, 726, 754
TatI	WGTACW	1 cut(s)	598
Tru1I	TTAA	2 cut(s)	285, 704
Tru9I	TTAA	2 cut(s)	285, 704
TscAI	CASTG	1 cut(s)	43
TseFI	GTSAC	1 cut(s)	565
TseI	GCWGC	3 cut(s)	617, 695, 698
Tsp45I	GTSAC	1 cut(s)	565
TspDTI	ATGAA	7 cut(s)	39, 283, 287, 390, 411, 605, 671
TspRI	CASTG	1 cut(s)	43
VpaK11BI	GGWCC	3 cut(s)	198, 359, 416
XapI	RAATTY	1 cut(s)	398
XcmI	CCANNNNNNNNNTGG	2 cut(s)	192, 577
XspI	CTAG	4 cut(s)	156, 221, 492, 540
ZrmI	AGTACT	1 cut(s)	600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.