Rh7CG042400
MYB Family

nuclease HARBI1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001154
Physical Location & Seq
Reverse (-)
2787811 .. 2788514
704 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG042400.1

Sequence Viewer

Length: 582 bp
ATGGTTGTTTGCGAAAAACAAGTGTATGACGATTGGGTTAAGGTTCACAAGGAAGCCAAAGGACTAAGACTTAAACCATTCATTCATTATGATAGTTTGGTGGAAGCTTTTGGGAGAGATAGAGCCAATGGGTTAGGAGCTGAAGGACCTGCTGAAGCGGATGAAGATTTGAATAATGACAATGAATTTGTTGATCTCGAAGGAGATGGTTTGCCTGAAAATATTGTTCCTACACCTGCTACTCCTACAACTTCTTCCGCTCCTAATTCAACTCGGACTAGAAAGCGAGCAAGGGACGCTTATGCTCAATGCCTGGGAGACATGGCTAGCACACTTCGCTTCTTTGTGGATGTGACCAAGACACACTTGGAGACTATGAAAGAAGTACTTTTGAATGACCATGCAACATCTACAAAAAGAGGTAAACTTGTCGATGAGCTTATGAAAATGGAAGGTTTGAATGATTATGACGTGCTTGAGGCTGCTACTACAATTATTAGCGATGACTCCAAAATTGAGCTCTTGTTTAGCTTACATGACAATTTAAAGAGCCAATGGATTTACAAGCTTCTTAACCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

193

Amino Acids

21.68

Weight (kDa)

4.97

Isoelectric Point (pI)

33.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 244
Acc36I ACCTGC 2 cut(s) 157, 244
AccBSI CCGCTC 1 cut(s) 260
AciI CCGC 2 cut(s) 158, 258
AcsI RAATTY 1 cut(s) 185
AcuI CTGAAG 2 cut(s) 162, 174
AfaI GTAC 1 cut(s) 387
AgsI TTSAA 4 cut(s) 172, 270, 394, 460
AjiI CACGTC 1 cut(s) 472
AjnI CCWGG 1 cut(s) 312
AluBI AGCT 6 cut(s) 107, 140, 439, 520, 531, 568
AluI AGCT 6 cut(s) 107, 140, 439, 520, 531, 568
Alw21I GWGCWC 1 cut(s) 522
Alw26I GTCTC 2 cut(s) 312, 365
ApeKI GCWGC 1 cut(s) 482
ApoI RAATTY 1 cut(s) 185
ArsI GACNNNNNNTTYG 2 cut(s) 170, 202
AspS9I GGNCC 1 cut(s) 146
AsuNHI GCTAGC 1 cut(s) 326
AvaII GGWCC 1 cut(s) 146
BanII GRGCYC 1 cut(s) 522
Bbv12I GWGCWC 1 cut(s) 522
BbvI GCAGC 1 cut(s) 469
BccI CCATC 1 cut(s) 200
BciT130I CCWGG 1 cut(s) 314
BcoDI GTCTC 2 cut(s) 312, 365
BfaI CTAG 3 cut(s) 279, 327, 580
BfuAI ACCTGC 2 cut(s) 157, 244
BisI GCNGC 1 cut(s) 483
BlsI GCNGC 1 cut(s) 484
BmcAI AGTACT 1 cut(s) 387
Bme1390I CCNGG 1 cut(s) 314
Bme18I GGWCC 1 cut(s) 146
BmgBI CACGTC 1 cut(s) 472
BmgT120I GGNCC 1 cut(s) 146
BmrFI CCNGG 1 cut(s) 314
BmtI GCTAGC 1 cut(s) 330
BpuEI CTTGAG 1 cut(s) 497
BsaJI CCNNGG 1 cut(s) 313
BseBI CCWGG 1 cut(s) 314
BseDI CCNNGG 1 cut(s) 313
BseGI GGATG 2 cut(s) 166, 355
BseXI GCAGC 1 cut(s) 469
BsiHKAI GWGCWC 1 cut(s) 522
BslFI GGGAC 1 cut(s) 308
BsmAI GTCTC 2 cut(s) 312, 365
BsmFI GGGAC 1 cut(s) 308
Bsp1286I GDGCHC 1 cut(s) 522
Bsp143I GATC 1 cut(s) 193
BspACI CCGC 2 cut(s) 158, 258
BspMI ACCTGC 2 cut(s) 157, 244
BspOI GCTAGC 1 cut(s) 330
BsrBI CCGCTC 1 cut(s) 260
BssECI CCNNGG 1 cut(s) 313
BssMI GATC 1 cut(s) 193
Bst2UI CCWGG 1 cut(s) 314
BstC8I GCNNGC 2 cut(s) 288, 328
BstDEI CTNAG 1 cut(s) 65
BstF5I GGATG 2 cut(s) 166, 355
BstKTI GATC 1 cut(s) 196
BstMAI GTCTC 2 cut(s) 312, 365
BstMBI GATC 1 cut(s) 193
BstMWI GCNNNNNNNGC 2 cut(s) 296, 336
BstNI CCWGG 1 cut(s) 314
BstSCI CCNGG 1 cut(s) 312
BstV1I GCAGC 1 cut(s) 469
BtgZI GCGATG 1 cut(s) 516
BtrI CACGTC 1 cut(s) 472
BtsCI GGATG 2 cut(s) 166, 355
BveI ACCTGC 2 cut(s) 157, 244
Cac8I GCNNGC 2 cut(s) 288, 328
Cfr13I GGNCC 1 cut(s) 146
CseI GACGC 1 cut(s) 305
Csp6I GTAC 1 cut(s) 386
CviAII CATG 3 cut(s) 322, 401, 536
CviQI GTAC 1 cut(s) 386
DdeI CTNAG 1 cut(s) 65
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
DraI TTTAAA 1 cut(s) 546
Ecl136II GAGCTC 1 cut(s) 520
Eco24I GRGCYC 1 cut(s) 522
Eco47I GGWCC 1 cut(s) 146
Eco53kI GAGCTC 1 cut(s) 520
Eco57I CTGAAG 2 cut(s) 162, 174
EcoICRI GAGCTC 1 cut(s) 520
EcoO109I RGGNCCY 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 312
EcoT38I GRGCYC 1 cut(s) 522
FaeI CATG 3 cut(s) 325, 404, 539
FaiI YATR 9 cut(s) 27, 90, 303, 323, 377, 402, 443, 468, 537
FalI AAGNNNNNCTT 6 cut(s) 283, 315, 350, 382, 372, 404
FaqI GGGAC 1 cut(s) 308
FatI CATG 3 cut(s) 321, 400, 535
Fnu4HI GCNGC 1 cut(s) 483
FokI GGATG 2 cut(s) 173, 362
FriOI GRGCYC 1 cut(s) 522
Fsp4HI GCNGC 1 cut(s) 483
FspBI CTAG 3 cut(s) 279, 327, 580
GluI GCNGC 1 cut(s) 483
HgaI GACGC 1 cut(s) 305
Hin1II CATG 3 cut(s) 325, 404, 539
HindIII AAGCTT 2 cut(s) 105, 566
HinfI GANTC 1 cut(s) 506
Hpy166II GTNNAC 2 cut(s) 46, 425
Hpy188I TCNGA 1 cut(s) 276
Hpy188III TCNNGA 1 cut(s) 197
Hpy8I GTNNAC 2 cut(s) 46, 425
HpyAV CCTTC 3 cut(s) 137, 194, 446
HpyCH4IV ACGT 1 cut(s) 471
HpyCH4V TGCA 1 cut(s) 404
HpyF10VI GCNNNNNNNGC 2 cut(s) 296, 336
HpyF3I CTNAG 1 cut(s) 65
HpySE526I ACGT 1 cut(s) 471
Hsp92II CATG 3 cut(s) 325, 404, 539
Kzo9I GATC 1 cut(s) 193
LmnI GCTCC 2 cut(s) 137, 265
LpnPI CCDG 5 cut(s) 162, 228, 249, 299, 326
Lsp1109I GCAGC 1 cut(s) 469
MaeI CTAG 3 cut(s) 279, 327, 580
MaeII ACGT 1 cut(s) 471
MaeIII GTNAC 1 cut(s) 352
MalI GATC 1 cut(s) 195
MbiI CCGCTC 1 cut(s) 260
MboI GATC 1 cut(s) 193
MboII GAAGA 2 cut(s) 176, 246
MhlI GDGCHC 1 cut(s) 522
MluCI AATT 5 cut(s) 185, 265, 492, 513, 541
MlyI GAGTC 1 cut(s) 500
MnlI CCTC 2 cut(s) 413, 472
MseI TTAA 4 cut(s) 39, 72, 545, 573
MspR9I CCNGG 1 cut(s) 314
MvaI CCWGG 1 cut(s) 314
MwoI GCNNNNNNNGC 2 cut(s) 296, 336
NdeII GATC 1 cut(s) 193
NheI GCTAGC 1 cut(s) 326
NlaIII CATG 3 cut(s) 325, 404, 539
NmuCI GTSAC 1 cut(s) 352
PaqCI CACCTGC 1 cut(s) 244
PkrI GCNGC 1 cut(s) 484
PleI GAGTC 1 cut(s) 500
PpsI GAGTC 1 cut(s) 500
PpuMI RGGWCCY 1 cut(s) 146
Psp124BI GAGCTC 1 cut(s) 522
Psp5II RGGWCCY 1 cut(s) 146
Psp6I CCWGG 1 cut(s) 312
PspGI CCWGG 1 cut(s) 312
PspPI GGNCC 1 cut(s) 146
PspPPI RGGWCCY 1 cut(s) 146
RsaI GTAC 1 cut(s) 387
RsaNI GTAC 1 cut(s) 386
SacI GAGCTC 1 cut(s) 522
SaqAI TTAA 4 cut(s) 39, 72, 545, 573
SatI GCNGC 1 cut(s) 483
Sau3AI GATC 1 cut(s) 193
Sau96I GGNCC 1 cut(s) 146
ScaI AGTACT 1 cut(s) 387
SchI GAGTC 1 cut(s) 500
ScrFI CCNGG 1 cut(s) 314
SduI GDGCHC 1 cut(s) 522
SinI GGWCC 1 cut(s) 146
SmlI CTYRAG 1 cut(s) 476
SmoI CTYRAG 1 cut(s) 476
Sse9I AATT 5 cut(s) 185, 265, 492, 513, 541
SsiI CCGC 2 cut(s) 158, 258
SspI AATATT 1 cut(s) 223
SspMI CTAG 3 cut(s) 279, 327, 580
SstI GAGCTC 1 cut(s) 522
StyD4I CCNGG 1 cut(s) 312
TaiI ACGT 1 cut(s) 474
TaqI TCGA 2 cut(s) 198, 432
TasI AATT 5 cut(s) 185, 265, 492, 513, 541
TatI WGTACW 1 cut(s) 385
Tru1I TTAA 4 cut(s) 39, 72, 545, 573
Tru9I TTAA 4 cut(s) 39, 72, 545, 573
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 1 cut(s) 482
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 6 cut(s) 70, 74, 177, 198, 392, 458
VpaK11BI GGWCC 1 cut(s) 146
XapI RAATTY 1 cut(s) 185
XcmI CCANNNNNNNNNTGG 1 cut(s) 364
XspI CTAG 3 cut(s) 279, 327, 580
ZrmI AGTACT 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.