RLG00000020159
MYB Family

nuclease activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001154
Physical Location & Seq
Reverse (-)
61857888 .. 61859195
1308 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020159

Sequence Viewer

Length: 750 bp
ATGGTCAACCTGGATGGAGCTTTCAAACAGGGTGTTAATGGAGGTGTGGGGGTTGTTTGTCGAAATGATGGTGAAAAGTTCATTAGGGCTTTATGTCTATCAGTTTCATATGCTGAGTCTGCCATTCATGTTGAGGCTACAGTCCTTCGTTCTGTACTATTATGGATTCTCAAACGAGGCTGGAACAATGTGGAGGTGGAGACTGATTTCAGTACTGCTTGCTGCTATGGTACGTGTTGGGACTTGGGAGTTCATAAGGATGCAAAAGGACTGAGAATGAAACTATTCATTCATTATGACGGCTTGATTGAAGCCTTTGGCAGAGATCGTGCAAATGGATTAGGAGCTGAAGGACCAGCTGAAGCAGATGAAGATCTAAATAATGAGAATAATTATGCTGACATTGAAGAAAATGGTGTGGATGAAATCACAGTTCCTTCACCTATTAGGAAGCGAGCACGAGTTGCTTATTCTCAATGTTTGAAAGACATGGCTAGCACACTACGCTCCTTTATGGATGTGACCAAGGCACACTTGGAGACAATGCAAGGAGTACTCATGAATGAGCATGCAACATCTGAAAGAAGAGGTAAGCTTGTTGACGAGCTTATGAAAATCGAAGGCATAAATGACTATGATGTTATAGAAGCTGCTACTGCAATTATTGGTGATGACTCCAAAATTGACCTTTTGTTCAATTTGCCAGACAACCTCAAAAGTCAATGGATTCATAAACTTCTCGGGCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

250

Amino Acids

27.64

Weight (kDa)

5.05

Isoelectric Point (pI)

44.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 2 cut(s) 369, 381
AfaI GTAC 4 cut(s) 156, 214, 232, 555
AflIII ACRYGT 1 cut(s) 233
AgsI TTSAA 5 cut(s) 25, 311, 407, 484, 697
AjnI CCWGG 1 cut(s) 9
AluBI AGCT 6 cut(s) 20, 347, 359, 595, 607, 650
AluI AGCT 6 cut(s) 20, 347, 359, 595, 607, 650
Alw21I GWGCWC 1 cut(s) 460
Alw26I GTCTC 2 cut(s) 194, 533
Ama87I CYCGRG 1 cut(s) 740
ApeKI GCWGC 2 cut(s) 222, 650
Asp700I GAANNNNTTC 1 cut(s) 284
AspS9I GGNCC 1 cut(s) 353
AsuHPI GGTGA 3 cut(s) 83, 432, 680
AsuNHI GCTAGC 1 cut(s) 494
AvaI CYCGRG 1 cut(s) 740
AvaII GGWCC 1 cut(s) 353
BauI CACGAG 1 cut(s) 459
Bbv12I GWGCWC 1 cut(s) 460
BbvI GCAGC 2 cut(s) 209, 637
BccI CCATC 2 cut(s) 8, 62
BceAI ACGGC 1 cut(s) 316
BciT130I CCWGG 1 cut(s) 11
BcoDI GTCTC 2 cut(s) 194, 533
BfaI CTAG 1 cut(s) 495
BfmI CTRYAG 1 cut(s) 138
BglII AGATCT 1 cut(s) 373
BisI GCNGC 2 cut(s) 223, 651
BlsI GCNGC 2 cut(s) 224, 652
BmcAI AGTACT 2 cut(s) 214, 555
Bme1390I CCNGG 1 cut(s) 11
Bme18I GGWCC 1 cut(s) 353
BmeT110I CYCGRG 1 cut(s) 740
BmgT120I GGNCC 1 cut(s) 353
BmrFI CCNGG 1 cut(s) 11
BmsI GCATC 1 cut(s) 250
BmtI GCTAGC 1 cut(s) 498
BsaAI YACGTR 1 cut(s) 234
BsaBI GATNNNNATC 1 cut(s) 372
BsaJI CCNNGG 1 cut(s) 525
Bse8I GATNNNNATC 1 cut(s) 372
BseBI CCWGG 1 cut(s) 11
BseDI CCNNGG 1 cut(s) 525
BseGI GGATG 4 cut(s) 19, 265, 427, 523
BseJI GATNNNNATC 1 cut(s) 372
BseMII CTCAG 2 cut(s) 105, 263
BseXI GCAGC 2 cut(s) 209, 637
BsiHKAI GWGCWC 1 cut(s) 460
BsiHKCI CYCGRG 1 cut(s) 740
BslFI GGGAC 1 cut(s) 254
BsmAI GTCTC 2 cut(s) 194, 533
BsmFI GGGAC 1 cut(s) 254
BsoBI CYCGRG 1 cut(s) 740
Bsp1286I GDGCHC 1 cut(s) 460
Bsp143I GATC 2 cut(s) 325, 373
BspCNI CTCAG 2 cut(s) 106, 264
BspHI TCATGA 1 cut(s) 558
BspOI GCTAGC 1 cut(s) 498
BssECI CCNNGG 1 cut(s) 525
BssMI GATC 2 cut(s) 325, 373
BssSI CACGAG 1 cut(s) 459
BssT1I CCWWGG 1 cut(s) 525
Bst2BI CACGAG 1 cut(s) 459
Bst2UI CCWGG 1 cut(s) 11
Bst4CI ACNGT 2 cut(s) 142, 433
Bst6I CTCTTC 1 cut(s) 580
BstAPI GCANNNNNTGC 1 cut(s) 464
BstBAI YACGTR 1 cut(s) 234
BstC8I GCNNGC 4 cut(s) 220, 456, 496, 570
BstDEI CTNAG 2 cut(s) 114, 272
BstF5I GGATG 4 cut(s) 19, 265, 427, 523
BstKTI GATC 2 cut(s) 328, 376
BstMAI GTCTC 2 cut(s) 194, 533
BstMBI GATC 2 cut(s) 325, 373
BstMWI GCNNNNNNNGC 4 cut(s) 119, 464, 504, 656
BstNI CCWGG 1 cut(s) 11
BstNSI RCATGY 1 cut(s) 572
BstSCI CCNGG 1 cut(s) 9
BstSFI CTRYAG 1 cut(s) 138
BstV1I GCAGC 2 cut(s) 209, 637
BstX2I RGATCY 1 cut(s) 373
BstYI RGATCY 1 cut(s) 373
BtsCI GGATG 4 cut(s) 19, 265, 427, 523
Cac8I GCNNGC 4 cut(s) 220, 456, 496, 570
CciI TCATGA 1 cut(s) 558
Cfr13I GGNCC 1 cut(s) 353
Csp6I GTAC 4 cut(s) 155, 213, 231, 554
CviAII CATG 4 cut(s) 128, 490, 559, 569
CviQI GTAC 4 cut(s) 155, 213, 231, 554
DdeI CTNAG 2 cut(s) 114, 272
DpnI GATC 2 cut(s) 327, 375
DpnII GATC 2 cut(s) 325, 373
Eam1104I CTCTTC 1 cut(s) 580
EarI CTCTTC 1 cut(s) 580
Eco130I CCWWGG 1 cut(s) 525
Eco47I GGWCC 1 cut(s) 353
Eco57I CTGAAG 2 cut(s) 369, 381
Eco88I CYCGRG 1 cut(s) 740
EcoRII CCWGG 1 cut(s) 9
EcoT14I CCWWGG 1 cut(s) 525
ErhI CCWWGG 1 cut(s) 525
FaeI CATG 4 cut(s) 131, 493, 562, 572
FalI AAGNNNNNCTT 2 cut(s) 518, 550
FaqI GGGAC 1 cut(s) 254
FatI CATG 4 cut(s) 127, 489, 558, 568
FauNDI CATATG 1 cut(s) 109
Fnu4HI GCNGC 2 cut(s) 223, 651
FokI GGATG 4 cut(s) 26, 272, 434, 530
Fsp4HI GCNGC 2 cut(s) 223, 651
FspBI CTAG 1 cut(s) 495
GluI GCNGC 2 cut(s) 223, 651
Hin1II CATG 4 cut(s) 131, 493, 562, 572
HincII GTYRAC 2 cut(s) 7, 601
HindII GTYRAC 2 cut(s) 7, 601
HindIII AAGCTT 1 cut(s) 593
HinfI GANTC 4 cut(s) 116, 166, 674, 727
HphI GGTGA 3 cut(s) 83, 432, 680
Hpy166II GTNNAC 2 cut(s) 7, 601
Hpy188I TCNGA 1 cut(s) 580
Hpy188III TCNNGA 1 cut(s) 559
Hpy8I GTNNAC 2 cut(s) 7, 601
HpyAV CCTTC 4 cut(s) 155, 344, 447, 614
HpyCH4III ACNGT 2 cut(s) 142, 433
HpyCH4IV ACGT 1 cut(s) 233
HpyCH4V TGCA 5 cut(s) 263, 332, 547, 572, 659
HpyF10VI GCNNNNNNNGC 4 cut(s) 119, 464, 504, 656
HpyF3I CTNAG 2 cut(s) 114, 272
HpySE526I ACGT 1 cut(s) 233
Hsp92II CATG 4 cut(s) 131, 493, 562, 572
Kzo9I GATC 2 cut(s) 325, 373
LmnI GCTCC 3 cut(s) 17, 344, 512
LpnPI CCDG 5 cut(s) 14, 23, 166, 369, 717
Lsp1109I GCAGC 2 cut(s) 209, 637
LweI GCATC 1 cut(s) 250
MaeI CTAG 1 cut(s) 495
MaeII ACGT 1 cut(s) 233
MaeIII GTNAC 1 cut(s) 520
MalI GATC 2 cut(s) 327, 375
MboI GATC 2 cut(s) 325, 373
MboII GAAGA 3 cut(s) 383, 419, 597
MflI RGATCY 1 cut(s) 373
MhlI GDGCHC 1 cut(s) 460
MluCI AATT 4 cut(s) 391, 660, 681, 697
MlyI GAGTC 2 cut(s) 125, 668
MnlI CCTC 6 cut(s) 35, 127, 170, 187, 581, 722
MroXI GAANNNNTTC 1 cut(s) 284
MseI TTAA 1 cut(s) 36
MslI CAYNNNNRTG 1 cut(s) 258
MspA1I CMGCKG 1 cut(s) 359
MspR9I CCNGG 1 cut(s) 11
MvaI CCWGG 1 cut(s) 11
MwoI GCNNNNNNNGC 4 cut(s) 119, 464, 504, 656
NdeI CATATG 1 cut(s) 109
NdeII GATC 2 cut(s) 325, 373
NheI GCTAGC 1 cut(s) 494
NlaIII CATG 4 cut(s) 131, 493, 562, 572
NmuCI GTSAC 1 cut(s) 520
NspI RCATGY 1 cut(s) 572
PaeI GCATGC 1 cut(s) 572
PagI TCATGA 1 cut(s) 558
PdmI GAANNNNTTC 1 cut(s) 284
PfeI GAWTC 2 cut(s) 166, 727
PkrI GCNGC 2 cut(s) 224, 652
PleI GAGTC 2 cut(s) 124, 668
PpsI GAGTC 2 cut(s) 124, 668
Ppu21I YACGTR 1 cut(s) 234
Psp6I CCWGG 1 cut(s) 9
PspGI CCWGG 1 cut(s) 9
PspPI GGNCC 1 cut(s) 353
PsuI RGATCY 1 cut(s) 373
PvuII CAGCTG 1 cut(s) 359
RsaI GTAC 4 cut(s) 156, 214, 232, 555
RsaNI GTAC 4 cut(s) 155, 213, 231, 554
RseI CAYNNNNRTG 1 cut(s) 258
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 2 cut(s) 223, 651
Sau3AI GATC 2 cut(s) 325, 373
Sau96I GGNCC 1 cut(s) 353
ScaI AGTACT 2 cut(s) 214, 555
SchI GAGTC 2 cut(s) 125, 668
ScrFI CCNGG 1 cut(s) 11
SduI GDGCHC 1 cut(s) 460
SfaNI GCATC 1 cut(s) 250
SfcI CTRYAG 1 cut(s) 138
SinI GGWCC 1 cut(s) 353
SmiMI CAYNNNNRTG 1 cut(s) 258
SphI GCATGC 1 cut(s) 572
Sse9I AATT 4 cut(s) 391, 660, 681, 697
SspMI CTAG 1 cut(s) 495
StyD4I CCNGG 1 cut(s) 9
StyI CCWWGG 1 cut(s) 525
TaaI ACNGT 2 cut(s) 142, 433
TaiI ACGT 1 cut(s) 236
TaqI TCGA 2 cut(s) 61, 618
TasI AATT 4 cut(s) 391, 660, 681, 697
TatI WGTACW 3 cut(s) 154, 212, 553
TfiI GAWTC 2 cut(s) 166, 727
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TseFI GTSAC 1 cut(s) 520
TseI GCWGC 2 cut(s) 222, 650
Tsp45I GTSAC 1 cut(s) 520
VpaK11BI GGWCC 1 cut(s) 353
XceI RCATGY 1 cut(s) 572
XcmI CCANNNNNNNNNTGG 1 cut(s) 532
XmnI GAANNNNTTC 1 cut(s) 284
XspI CTAG 1 cut(s) 495
ZrmI AGTACT 2 cut(s) 214, 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.