Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001154

Physical Location & Seq

Genomic Coordinates Reverse (-)

78319312 .. 78324071

Gene Structure 4760 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34735

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGATTTGCAAGCAAACTCAAGATCCTCAACTAGTAGAAGTGGAAGAAATAAAGAGAAGCAACCATCACACACCTGGACCCCTATTGAAGATGTAGCTCTAGTTGAGGCTTTAACTGAACTTTGTGTTTCTGGGACCTGGAAGGTTGACAATGGATTCAAGGCAGGATATTTGGGACAACTAGAAAAAATTATAGAGCAAAAGCTACCAAATTGTGGATTAAAGGCGAACCCCCACATTGAGTCTCGTGTTAAGACACTAAAGAAACAAACACTAGCCATCTCTGACATGATTGCTAACTCAAGTGGCTTCTCATGGGACCATGAAAATAAAATGGTTATTTGTGAAAAACAAGTGTATGACGATTGGGTTAAGGTTCACAAGGAAGCCAAAGGACTAAGACTTAAACCATTCATTCATTATGATAGTTTGGTGGAAGCTTTTGGGAGAGATAGAGCCAATGGGTTAGGAGCTGAAGGACCTGCTGAAGCGGATGAAGATTTGAATAATGATAATGAATTTGTTGATCTCGAAGGAGATGGTTTGCCTGAAAATGTTGTTCCTACACCTGCTACTCGTACAACTTCTTCCTCTTCTAATTCAACTAGGACTAGAAAGCGAGCAAGGGACACTTATGCCCAATGCTTGGGAGACATGGCTAGCACACTTCGCTCCTTTGTGGATGTGACCAAGACACACTTGGAGACTATGAAAGAAGTACTTTTGAATGACCATGCAACATCTACAAAAAGAGGTAAACTTGTCGAAGAGCTTATGAAAATTGAAGGTTTGAATGATTATGATGTGCTTGAGGCTGCTGCTACTATTATTGGCGATGACTCCAAAATTGAGCTCTTGTTCAGCTTACCTGACAATTTAAAGAGCCAATGGATTTACAAGCTTCTTAACCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

304

Amino Acids

33.94

Weight (kDa)

5.58

Isoelectric Point (pI)

43.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_3	PF12776	25 - 121	2.2e-07	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001154)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g08194
prunus_persica	Prupe.4G257700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0343671 RchiOBHm_Chr5g0072391 RchiOBHm_Chr6g0274461 RchiOBHm_Chr6g0284621
rosa_laevigata	RLG00000001201 RLG00000008793 RLG00000013285 RLG00000013580 RLG00000015412 RLG00000020159 RLG00000022735 RLG00000029912 RLG00000030782 RLG00000032954
rosa_multiflora	Rmu_sc0000233.1_g000006 Rmu_sc0001240.1_g000006 Rmu_sc0002352.1_g000014 Rmu_sc0003882.1_g000036 Rmu_sc0004016.1_g000017 Rmu_sc0004698.1_g000002 Rmu_sc0006651.1_g000003 Rmu_sc0009984.1_g000002 Rmu_sc0010945.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083960 Rroxscaffold_2G00137540 Rroxscaffold_2G00137550 Rroxscaffold_3G00226540 Rroxscaffold_3G00276350 Rroxscaffold_7G00175350
rosa_rugosa	Rorug02G0052000 Rorug04G0314300 Rorug05G0057300 Rorug06G0033500
rosa_samantha	Rh1CG381500 Rh2DG003400 Rh3BG333400 Rh4AG123000 Rh4AG311600 Rh4AG339700 Rh4CG303900 Rh4CG334100 Rh5AG318400 Rh5BG324000 Rh6AG407700 Rh6BG340400 Rh7AG126300 Rh7CG042400 Rh7CG042500 Rh7CG154400 Rh7CG166300 Rh7CG315500
rosa_wichuraiana	Rw5G010820 Rw5G026590 Rw6G003280 Rw6G021230 Rw7G013220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	577
Acc36I	ACCTGC	2 cut(s)	490, 577
AccB7I	CCANNNNNTGG	2 cut(s)	215, 646
AciI	CCGC	1 cut(s)	491
AclWI	GGATC	1 cut(s)	18
AcsI	RAATTY	1 cut(s)	518
AcuI	CTGAAG	2 cut(s)	495, 507
AfaI	GTAC	2 cut(s)	580, 720
AfiI	CCNNNNNNNGG	2 cut(s)	215, 646
AgsI	TTSAA	7 cut(s)	89, 160, 505, 603, 727, 785, 793
AhlI	ACTAGT	1 cut(s)	32
AjnI	CCWGG	2 cut(s)	74, 137
AluBI	AGCT	8 cut(s)	98, 205, 440, 473, 772, 853, 864, 901
AluI	AGCT	8 cut(s)	98, 205, 440, 473, 772, 853, 864, 901
Alw21I	GWGCWC	1 cut(s)	855
Alw26I	GTCTC	3 cut(s)	249, 645, 698
AlwI	GGATC	1 cut(s)	18
ApeKI	GCWGC	2 cut(s)	815, 818
ApoI	RAATTY	1 cut(s)	518
AspS9I	GGNCC	4 cut(s)	78, 135, 319, 479
AsuNHI	GCTAGC	1 cut(s)	659
AvaII	GGWCC	4 cut(s)	78, 135, 319, 479
BanII	GRGCYC	1 cut(s)	855
BarI	GAAGNNNNNNTAC	2 cut(s)	571, 603
BauI	CACGAG	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	855
BbvI	GCAGC	2 cut(s)	802, 805
BccI	CCATC	3 cut(s)	73, 287, 533
BciT130I	CCWGG	2 cut(s)	76, 139
BcoDI	GTCTC	3 cut(s)	249, 645, 698
BcuI	ACTAGT	1 cut(s)	32
BfaI	CTAG	8 cut(s)	33, 101, 182, 275, 606, 612, 660, 913
BfuAI	ACCTGC	2 cut(s)	490, 577
BisI	GCNGC	2 cut(s)	816, 819
BlsI	GCNGC	2 cut(s)	817, 820
BmcAI	AGTACT	1 cut(s)	720
Bme1390I	CCNGG	2 cut(s)	76, 139
Bme18I	GGWCC	4 cut(s)	78, 135, 319, 479
BmgT120I	GGNCC	4 cut(s)	78, 135, 319, 479
BmiI	GGNNCC	3 cut(s)	80, 136, 320
BmrFI	CCNGG	2 cut(s)	76, 139
BmtI	GCTAGC	1 cut(s)	663
BpuEI	CTTGAG	3 cut(s)	4, 286, 830
Bsc4I	CCNNNNNNNGG	2 cut(s)	215, 646
BseBI	CCWGG	2 cut(s)	76, 139
BseGI	GGATG	2 cut(s)	499, 688
BseLI	CCNNNNNNNGG	2 cut(s)	215, 646
BseXI	GCAGC	2 cut(s)	802, 805
BsiHKAI	GWGCWC	1 cut(s)	855
BslFI	GGGAC	4 cut(s)	148, 189, 332, 641
BslI	CCNNNNNNNGG	2 cut(s)	215, 646
BsmAI	GTCTC	3 cut(s)	249, 645, 698
BsmFI	GGGAC	4 cut(s)	148, 189, 332, 641
Bsp1286I	GDGCHC	1 cut(s)	855
Bsp143I	GATC	2 cut(s)	23, 526
BspACI	CCGC	1 cut(s)	491
BspLI	GGNNCC	3 cut(s)	80, 136, 320
BspMI	ACCTGC	2 cut(s)	490, 577
BspOI	GCTAGC	1 cut(s)	663
BspPI	GGATC	1 cut(s)	18
BspQI	GCTCTTC	1 cut(s)	762
BssMI	GATC	2 cut(s)	23, 526
BssSI	CACGAG	1 cut(s)	246
Bst2BI	CACGAG	1 cut(s)	246
Bst2UI	CCWGG	2 cut(s)	76, 139
Bst6I	CTCTTC	2 cut(s)	598, 762
BstC8I	GCNNGC	3 cut(s)	12, 621, 661
BstDEI	CTNAG	1 cut(s)	398
BstF5I	GGATG	2 cut(s)	499, 688
BstKTI	GATC	2 cut(s)	26, 529
BstMAI	GTCTC	3 cut(s)	249, 645, 698
BstMBI	GATC	2 cut(s)	23, 526
BstMWI	GCNNNNNNNGC	1 cut(s)	669
BstNI	CCWGG	2 cut(s)	76, 139
BstSCI	CCNGG	2 cut(s)	74, 137
BstV1I	GCAGC	2 cut(s)	802, 805
BstX2I	RGATCY	1 cut(s)	23
BstYI	RGATCY	1 cut(s)	23
BtgZI	GCGATG	1 cut(s)	849
BtsCI	GGATG	2 cut(s)	499, 688
BveI	ACCTGC	2 cut(s)	490, 577
Cac8I	GCNNGC	3 cut(s)	12, 621, 661
Cfr13I	GGNCC	4 cut(s)	78, 135, 319, 479
Csp6I	GTAC	2 cut(s)	579, 719
CviAII	CATG	5 cut(s)	289, 315, 323, 655, 734
CviQI	GTAC	2 cut(s)	579, 719
DdeI	CTNAG	1 cut(s)	398
DpnI	GATC	2 cut(s)	25, 528
DpnII	GATC	2 cut(s)	23, 526
DraI	TTTAAA	1 cut(s)	879
Eam1104I	CTCTTC	2 cut(s)	598, 762
EarI	CTCTTC	2 cut(s)	598, 762
Ecl136II	GAGCTC	1 cut(s)	853
Eco24I	GRGCYC	1 cut(s)	855
Eco47I	GGWCC	4 cut(s)	78, 135, 319, 479
Eco53kI	GAGCTC	1 cut(s)	853
Eco57I	CTGAAG	2 cut(s)	495, 507
EcoICRI	GAGCTC	1 cut(s)	853
EcoO109I	RGGNCCY	2 cut(s)	135, 479
EcoRII	CCWGG	2 cut(s)	74, 137
EcoT38I	GRGCYC	1 cut(s)	855
FaeI	CATG	5 cut(s)	292, 318, 326, 658, 737
FalI	AAGNNNNNCTT	6 cut(s)	616, 648, 683, 715, 705, 737
FaqI	GGGAC	4 cut(s)	148, 189, 332, 641
FatI	CATG	5 cut(s)	288, 314, 322, 654, 733
Fnu4HI	GCNGC	2 cut(s)	816, 819
FokI	GGATG	2 cut(s)	506, 695
FriOI	GRGCYC	1 cut(s)	855
Fsp4HI	GCNGC	2 cut(s)	816, 819
FspBI	CTAG	8 cut(s)	33, 101, 182, 275, 606, 612, 660, 913
GluI	GCNGC	2 cut(s)	816, 819
Hin1II	CATG	5 cut(s)	292, 318, 326, 658, 737
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HindIII	AAGCTT	2 cut(s)	438, 899
HinfI	GANTC	3 cut(s)	156, 242, 839
Hpy166II	GTNNAC	3 cut(s)	148, 379, 758
Hpy188I	TCNGA	1 cut(s)	286
Hpy188III	TCNNGA	2 cut(s)	21, 530
Hpy8I	GTNNAC	3 cut(s)	148, 379, 758
HpyAV	CCTTC	4 cut(s)	136, 470, 527, 779
HpyCH4V	TGCA	2 cut(s)	10, 737
HpyF10VI	GCNNNNNNNGC	1 cut(s)	669
HpyF3I	CTNAG	1 cut(s)	398
Hsp92II	CATG	5 cut(s)	292, 318, 326, 658, 737
Kzo9I	GATC	2 cut(s)	23, 526
LguI	GCTCTTC	1 cut(s)	762
LmnI	GCTCC	2 cut(s)	470, 677
Lsp1109I	GCAGC	2 cut(s)	802, 805
MaeI	CTAG	8 cut(s)	33, 101, 182, 275, 606, 612, 660, 913
MaeIII	GTNAC	1 cut(s)	685
MalI	GATC	2 cut(s)	25, 528
MboI	GATC	2 cut(s)	23, 526
MboII	GAAGA	6 cut(s)	57, 101, 509, 579, 585, 779
MflI	RGATCY	1 cut(s)	23
MhlI	GDGCHC	1 cut(s)	855
MluCI	AATT	7 cut(s)	189, 211, 518, 598, 780, 846, 874
MlyI	GAGTC	2 cut(s)	251, 833
MnlI	CCTC	5 cut(s)	37, 100, 601, 746, 805
MseI	TTAA	7 cut(s)	113, 221, 252, 372, 405, 878, 906
MspR9I	CCNGG	2 cut(s)	76, 139
MvaI	CCWGG	2 cut(s)	76, 139
MwoI	GCNNNNNNNGC	1 cut(s)	669
NdeII	GATC	2 cut(s)	23, 526
NheI	GCTAGC	1 cut(s)	659
NlaIII	CATG	5 cut(s)	292, 318, 326, 658, 737
NlaIV	GGNNCC	3 cut(s)	80, 136, 320
NmuCI	GTSAC	1 cut(s)	685
PaqCI	CACCTGC	1 cut(s)	577
PciSI	GCTCTTC	1 cut(s)	762
PfeI	GAWTC	1 cut(s)	156
PflMI	CCANNNNNTGG	2 cut(s)	215, 646
PkrI	GCNGC	2 cut(s)	817, 820
PleI	GAGTC	2 cut(s)	250, 833
PpsI	GAGTC	2 cut(s)	250, 833
PpuMI	RGGWCCY	2 cut(s)	135, 479
Psp124BI	GAGCTC	1 cut(s)	855
Psp5II	RGGWCCY	2 cut(s)	135, 479
Psp6I	CCWGG	2 cut(s)	74, 137
PspGI	CCWGG	2 cut(s)	74, 137
PspN4I	GGNNCC	3 cut(s)	80, 136, 320
PspPI	GGNCC	4 cut(s)	78, 135, 319, 479
PspPPI	RGGWCCY	2 cut(s)	135, 479
PsuI	RGATCY	1 cut(s)	23
RsaI	GTAC	2 cut(s)	580, 720
RsaNI	GTAC	2 cut(s)	579, 719
SacI	GAGCTC	1 cut(s)	855
SapI	GCTCTTC	1 cut(s)	762
SaqAI	TTAA	7 cut(s)	113, 221, 252, 372, 405, 878, 906
SatI	GCNGC	2 cut(s)	816, 819
Sau3AI	GATC	2 cut(s)	23, 526
Sau96I	GGNCC	4 cut(s)	78, 135, 319, 479
ScaI	AGTACT	1 cut(s)	720
SchI	GAGTC	2 cut(s)	251, 833
ScrFI	CCNGG	2 cut(s)	76, 139
SduI	GDGCHC	1 cut(s)	855
SinI	GGWCC	4 cut(s)	78, 135, 319, 479
SmlI	CTYRAG	3 cut(s)	19, 301, 809
SmoI	CTYRAG	3 cut(s)	19, 301, 809
SpeI	ACTAGT	1 cut(s)	32
Sse9I	AATT	7 cut(s)	189, 211, 518, 598, 780, 846, 874
SsiI	CCGC	1 cut(s)	491
SspMI	CTAG	8 cut(s)	33, 101, 182, 275, 606, 612, 660, 913
SstI	GAGCTC	1 cut(s)	855
StyD4I	CCNGG	2 cut(s)	74, 137
TaqI	TCGA	2 cut(s)	531, 765
TasI	AATT	7 cut(s)	189, 211, 518, 598, 780, 846, 874
TatI	WGTACW	1 cut(s)	718
TfiI	GAWTC	1 cut(s)	156
Tru1I	TTAA	7 cut(s)	113, 221, 252, 372, 405, 878, 906
Tru9I	TTAA	7 cut(s)	113, 221, 252, 372, 405, 878, 906
TseFI	GTSAC	1 cut(s)	685
TseI	GCWGC	2 cut(s)	815, 818
Tsp45I	GTSAC	1 cut(s)	685
TspDTI	ATGAA	7 cut(s)	339, 403, 407, 510, 531, 725, 791
Van91I	CCANNNNNTGG	2 cut(s)	215, 646
VpaK11BI	GGWCC	4 cut(s)	78, 135, 319, 479
XapI	RAATTY	1 cut(s)	518
XcmI	CCANNNNNNNNNTGG	2 cut(s)	72, 697
XspI	CTAG	8 cut(s)	33, 101, 182, 275, 606, 612, 660, 913
ZrmI	AGTACT	1 cut(s)	720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.