Rorug06G0033500
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001154
Physical Location & Seq
Reverse (-)
4099394 .. 4101147
1754 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0033500.1

Sequence Viewer

Length: 1530 bp
ATGGGTAGCTTCCCATTCCACCAGGATCTACAAGAGATCGCCTCTTCCCAACTGACCAAAGCCCTAGACCCCGAAGAGTTCAGGAAACAAGGCCATATGGTCATAGACTTCATTGCAGATTACTATCAAAACATAGAGAAATATCCAGTTCTAAGCCGAGTTGAACCAGGGTATTTGAAAAAATGCCTACCAGAGTCAGCTCCATATGACGCTGAACCCATCTCAACCATCCTTAAAGATGTTCAGGATCACATTGTTCCTGGCCTAACACATTGGCAAAGTCCCAATTTCTTTGCATACTTCTCTTCAACTGCTAGCACTGCTGGATTTCTCGGTGAAATACTCACCACTGGATTTAATGTGGTGGGGTTCAACTGGGTTTCATCACCGGCAGCAACCGAGCTCGAAAACATAGTCATGGATTGGTTGGGAGACATGCTTCAGCTTCCCAAGTCTTTCCATTTCTCTGGCAATGGCGGCGGTGTTTTGCATGGGAGTACTTGTGAGGCCATTGTTTGCACAATGGTGGCTGCCAGGGACCAAATGCTAAGCCGAATTGGTAGCGAGAATTTGGGAAAGCTTGTAGTGTATGGTTCAGACCAAACACATAGCACACTTCAAAAAGCTACCCAAATTGTTGGAATCAACACGGAGAACTTCCGGGCCATCAAGACTACAAAGTCAACTGGTTTTGCACTATCACCTGAGATGCTAACATTGACAATAAGTTCCGACCTGGAAAAAGGTCTAGTGCCGCTCTTTCTTTGTGCCACAATGGGCACAACCGCCACCACTGCTATTGATCCATTGGAGGCACTATGTCATGTAGCAAAAGAATACGGCGTGTGGGTTCATGTGGATGCTGCATATGCTGGAAGTGCCTGCATTTGTCCAGAATTTCGGCATTTCATTAACGGCGTAGAGGGCGCAAATTCTTTTAGTTTCAACCCCCATAAGTGGTTATTCACTGGAATGGATTGCTGTTGCCTTTGGGTTAAGAATCCAAGTGTGTTGGTAAGTTCACTGTCGACGAATCCGGAGTTTTTGAGGAACAAAGCCAGTGATTCAAAGCAAGTTGTGGACTACAAAGATTGGCAAATAGCCCTAAGCCGGAGGTTTCGGGCATTGAAGCTGTGGCTTGTACTAAGAAGCTATGGTGTGGCTAACCTTAGAAACTTTATTCGTATCCATGTCAACATGGCCAAGACTTTTGAAGGGCTTGTGAGAATGGACAAGAGGTTTGAGATTCTGGTGCCTAGAAACTTCTCCTTGGTCTGCTTTAGAATTTCACCATCGGCCTTGAACAGTAGTAATGAGGATGATGAGATCGGTATGGTAAACGAGGTCAATTGCAAATTGCTGGAGGCCATCAATGCATCAGGTAAAGCATACATGACTCATGCTGTGGTTGGAGGGCTGTACGTGCTTCGTTGCGCGGTTGGTGCAACTCTGTCCGAGGAAAAGCACATAGTCGAGGCTTGGAAGGTGGTGCAGGACCATGCACAAGCCATCCTCAGCACGTATTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

509

Amino Acids

56.42

Weight (kDa)

6.02

Isoelectric Point (pI)

44.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyridoxal_deC PF00282 56 - 429 2.4e-114 Pyridoxal-dependent decarboxylase conserved domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 679
AccB1I GGYRCC 1 cut(s) 1252
AccBSI CCGCTC 1 cut(s) 757
AccI GTMKAC 1 cut(s) 1028
AccII CGCG 1 cut(s) 1436
AccIII TCCGGA 1 cut(s) 1036
AciI CCGC 5 cut(s) 477, 480, 755, 786, 1436
AclWI GGATC 3 cut(s) 33, 255, 797
AcoI YGGCCR 1 cut(s) 1200
AcsI RAATTY 4 cut(s) 568, 896, 931, 1284
AcuI CTGAAG 1 cut(s) 425
AfaI GTAC 3 cut(s) 499, 1143, 1421
AfiI CCNNNNNNNGG 2 cut(s) 957, 1110
AjnI CCWGG 5 cut(s) 21, 166, 259, 533, 735
AleI CACNNNNGTG 1 cut(s) 524
AluBI AGCT 8 cut(s) 9, 200, 403, 445, 580, 626, 1132, 1152
AluI AGCT 8 cut(s) 9, 200, 403, 445, 580, 626, 1132, 1152
Alw21I GWGCWC 1 cut(s) 405
Alw26I GTCTC 1 cut(s) 426
AlwI GGATC 3 cut(s) 33, 255, 797
Aor13HI TCCGGA 1 cut(s) 1036
AoxI GGCC 7 cut(s) 91, 262, 507, 663, 1200, 1296, 1365
ApeKI GCWGC 3 cut(s) 392, 530, 863
ApoI RAATTY 4 cut(s) 568, 896, 931, 1284
ArsI GACNNNNNNTTYG 4 cut(s) 399, 431, 1223, 1255
AspLEI GCGC 2 cut(s) 929, 1436
AspS9I GGNCC 3 cut(s) 538, 663, 1495
AsuC2I CCSGG 1 cut(s) 662
AsuHPI GGTGA 5 cut(s) 337, 347, 378, 693, 1281
AsuNHI GCTAGC 1 cut(s) 314
AvaII GGWCC 2 cut(s) 538, 1495
BaeGI GKGCMC 1 cut(s) 782
BalI TGGCCA 1 cut(s) 1202
BanI GGYRCC 1 cut(s) 1252
BanII GRGCYC 1 cut(s) 405
Bbv12I GWGCWC 1 cut(s) 405
BbvCI CCTCAGC 1 cut(s) 1514
BbvI GCAGC 3 cut(s) 404, 517, 850
BccI CCATC 6 cut(s) 227, 236, 674, 1300, 1376, 1517
BceAI ACGGC 2 cut(s) 856, 931
BciT130I CCWGG 5 cut(s) 23, 168, 261, 535, 737
BciVI GTATCC 1 cut(s) 1196
BcnI CCSGG 1 cut(s) 662
BcoDI GTCTC 1 cut(s) 426
BfaI CTAG 4 cut(s) 65, 315, 749, 1257
BfuI GTATCC 1 cut(s) 1196
BisI GCNGC 5 cut(s) 393, 478, 531, 755, 864
BlpI GCTNAGC 1 cut(s) 548
BlsI GCNGC 5 cut(s) 394, 479, 532, 756, 865
BmcAI AGTACT 1 cut(s) 499
Bme1390I CCNGG 6 cut(s) 23, 168, 261, 535, 662, 737
Bme18I GGWCC 2 cut(s) 538, 1495
BmgT120I GGNCC 3 cut(s) 538, 663, 1495
BmiI GGNNCC 2 cut(s) 539, 1254
BmrFI CCNGG 6 cut(s) 23, 168, 261, 535, 662, 737
BmrI ACTGGG 1 cut(s) 385
BmsI GCATC 3 cut(s) 699, 850, 1385
BmtI GCTAGC 1 cut(s) 318
BmuI ACTGGG 1 cut(s) 385
BplI GAGNNNNNCTC 2 cut(s) 26, 58
BpmI CTGGAG 1 cut(s) 1382
Bpu10I CCTNAGC 2 cut(s) 1106, 1514
Bpu1102I GCTNAGC 1 cut(s) 548
BpuMI CCSGG 1 cut(s) 662
BsaAI YACGTR 2 cut(s) 1423, 1521
BsaBI GATNNNNATC 1 cut(s) 123
BsaJI CCNNGG 4 cut(s) 167, 534, 1269, 1455
BsaWI WCCGGW 1 cut(s) 1036
BsaXI ACNNNNNCTCC 2 cut(s) 487, 517
Bsc4I CCNNNNNNNGG 2 cut(s) 957, 1110
Bse118I RCCGGY 1 cut(s) 388
Bse1I ACTGG 6 cut(s) 146, 355, 380, 691, 973, 1059
Bse3DI GCAATG 2 cut(s) 111, 478
Bse8I GATNNNNATC 1 cut(s) 123
BseAI TCCGGA 1 cut(s) 1036
BseBI CCWGG 5 cut(s) 23, 168, 261, 535, 737
BseDI CCNNGG 4 cut(s) 167, 534, 1269, 1455
BseGI GGATG 4 cut(s) 228, 865, 1324, 1509
BseJI GATNNNNATC 1 cut(s) 123
BseLI CCNNNNNNNGG 2 cut(s) 957, 1110
BseMI GCAATG 2 cut(s) 111, 478
BseMII CTCAG 2 cut(s) 696, 1528
BseNI ACTGG 6 cut(s) 146, 355, 380, 691, 973, 1059
BseSI GKGCMC 1 cut(s) 782
BseXI GCAGC 3 cut(s) 404, 517, 850
BsgI GTGCAG 1 cut(s) 1511
Bsh1236I CGCG 1 cut(s) 1436
BshFI GGCC 7 cut(s) 93, 264, 509, 665, 1202, 1298, 1367
BshNI GGYRCC 1 cut(s) 1252
BsiHKAI GWGCWC 1 cut(s) 405
BsiSI CCGG 4 cut(s) 389, 661, 1037, 1111
BslFI GGGAC 2 cut(s) 267, 551
BslI CCNNNNNNNGG 2 cut(s) 957, 1110
BsmAI GTCTC 1 cut(s) 426
BsmFI GGGAC 2 cut(s) 267, 551
BsnI GGCC 7 cut(s) 93, 264, 509, 665, 1202, 1298, 1367
Bsp1286I GDGCHC 2 cut(s) 405, 782
Bsp13I TCCGGA 1 cut(s) 1036
Bsp143I GATC 5 cut(s) 25, 36, 247, 802, 1326
Bsp1720I GCTNAGC 1 cut(s) 548
BspACI CCGC 5 cut(s) 477, 480, 755, 786, 1436
BspANI GGCC 7 cut(s) 93, 264, 509, 665, 1202, 1298, 1367
BspCNI CTCAG 2 cut(s) 697, 1527
BspEI TCCGGA 1 cut(s) 1036
BspFNI CGCG 1 cut(s) 1436
BspLI GGNNCC 2 cut(s) 539, 1254
BspOI GCTAGC 1 cut(s) 318
BspPI GGATC 3 cut(s) 33, 255, 797
BspT107I GGYRCC 1 cut(s) 1252
BsrBI CCGCTC 1 cut(s) 757
BsrDI GCAATG 2 cut(s) 111, 478
BsrFI RCCGGY 1 cut(s) 388
BsrI ACTGG 6 cut(s) 146, 355, 380, 691, 973, 1059
BssAI RCCGGY 1 cut(s) 388
BssECI CCNNGG 4 cut(s) 167, 534, 1269, 1455
BssMI GATC 5 cut(s) 25, 36, 247, 802, 1326
BssT1I CCWWGG 1 cut(s) 1269
Bst2UI CCWGG 5 cut(s) 23, 168, 261, 535, 737
Bst4CI ACNGT 2 cut(s) 1026, 1307
Bst6I CTCTTC 3 cut(s) 49, 69, 310
BstBAI YACGTR 2 cut(s) 1423, 1521
BstC8I GCNNGC 2 cut(s) 316, 883
BstDEI CTNAG 7 cut(s) 152, 548, 705, 1106, 1145, 1169, 1514
BstF5I GGATG 4 cut(s) 228, 865, 1324, 1509
BstFNI CGCG 1 cut(s) 1436
BstHHI GCGC 2 cut(s) 929, 1436
BstKTI GATC 5 cut(s) 28, 39, 250, 805, 1329
BstMAI GTCTC 1 cut(s) 426
BstMBI GATC 5 cut(s) 25, 36, 247, 802, 1326
BstMWI GCNNNNNNNGC 9 cut(s) 320, 477, 794, 869, 878, 924, 1373, 1423, 1442
BstNI CCWGG 5 cut(s) 23, 168, 261, 535, 737
BstNSI RCATGY 1 cut(s) 439
BstSCI CCNGG 6 cut(s) 21, 166, 259, 533, 660, 735
BstSLI GKGCMC 1 cut(s) 782
BstUI CGCG 1 cut(s) 1436
BstV1I GCAGC 3 cut(s) 404, 517, 850
BstX2I RGATCY 1 cut(s) 25
BstXI CCANNNNNNTGG 2 cut(s) 467, 638
BstYI RGATCY 1 cut(s) 25
BsuI GTATCC 1 cut(s) 1196
BsuRI GGCC 7 cut(s) 93, 264, 509, 665, 1202, 1298, 1367
BtsCI GGATG 4 cut(s) 228, 865, 1324, 1509
BtsI GCAGTG 2 cut(s) 318, 792
BtsIMutI CAGTG 6 cut(s) 318, 348, 792, 966, 1022, 1066
Cac8I GCNNGC 2 cut(s) 316, 883
CfoI GCGC 2 cut(s) 929, 1436
Cfr10I RCCGGY 1 cut(s) 388
Cfr13I GGNCC 3 cut(s) 538, 663, 1495
CseI GACGC 1 cut(s) 218
Csp6I GTAC 3 cut(s) 498, 1142, 1420
CspCI CAANNNNNGTGG 2 cut(s) 781, 816
CviQI GTAC 3 cut(s) 498, 1142, 1420
DdeI CTNAG 7 cut(s) 152, 548, 705, 1106, 1145, 1169, 1514
DpnI GATC 5 cut(s) 27, 38, 249, 804, 1328
DpnII GATC 5 cut(s) 25, 36, 247, 802, 1326
DrdI GACNNNNNNGTC 1 cut(s) 679
DseDI GACNNNNNNGTC 1 cut(s) 679
EaeI YGGCCR 1 cut(s) 1200
Eam1104I CTCTTC 3 cut(s) 49, 69, 310
EarI CTCTTC 3 cut(s) 49, 69, 310
Ecl136II GAGCTC 1 cut(s) 403
Eco130I CCWWGG 1 cut(s) 1269
Eco24I GRGCYC 1 cut(s) 405
Eco47I GGWCC 2 cut(s) 538, 1495
Eco53kI GAGCTC 1 cut(s) 403
Eco57I CTGAAG 1 cut(s) 425
EcoICRI GAGCTC 1 cut(s) 403
EcoRII CCWGG 5 cut(s) 21, 166, 259, 533, 735
EcoT14I CCWWGG 1 cut(s) 1269
EcoT22I ATGCAT 1 cut(s) 1378
EcoT38I GRGCYC 1 cut(s) 405
ErhI CCWWGG 1 cut(s) 1269
FaqI GGGAC 2 cut(s) 267, 551
FauNDI CATATG 3 cut(s) 96, 205, 868
FblI GTMKAC 1 cut(s) 1028
Fnu4HI GCNGC 5 cut(s) 393, 478, 531, 755, 864
FokI GGATG 4 cut(s) 215, 872, 1331, 1496
FriOI GRGCYC 1 cut(s) 405
Fsp4HI GCNGC 5 cut(s) 393, 478, 531, 755, 864
FspBI CTAG 4 cut(s) 65, 315, 749, 1257
GlaI GCGC 2 cut(s) 928, 1435
GluI GCNGC 5 cut(s) 393, 478, 531, 755, 864
GsuI CTGGAG 1 cut(s) 1382
HaeIII GGCC 7 cut(s) 93, 264, 509, 665, 1202, 1298, 1367
HapII CCGG 4 cut(s) 389, 661, 1037, 1111
HgaI GACGC 1 cut(s) 218
HhaI GCGC 2 cut(s) 929, 1436
Hin6I GCGC 2 cut(s) 927, 1434
HinP1I GCGC 2 cut(s) 927, 1434
HincII GTYRAC 3 cut(s) 684, 1029, 1195
HindII GTYRAC 3 cut(s) 684, 1029, 1195
HindIII AAGCTT 1 cut(s) 578
HinfI GANTC 7 cut(s) 194, 642, 1000, 1033, 1064, 1246, 1396
HpaII CCGG 4 cut(s) 389, 661, 1037, 1111
HphI GGTGA 5 cut(s) 337, 347, 378, 693, 1281
Hpy166II GTNNAC 6 cut(s) 684, 1022, 1029, 1081, 1195, 1339
Hpy188I TCNGA 3 cut(s) 598, 733, 1456
Hpy188III TCNNGA 5 cut(s) 82, 245, 670, 893, 1037
Hpy8I GTNNAC 6 cut(s) 684, 1022, 1029, 1081, 1195, 1339
Hpy99I CGWCG 1 cut(s) 1033
HpyAV CCTTC 2 cut(s) 1208, 1477
HpyCH4III ACNGT 2 cut(s) 1026, 1307
HpyCH4IV ACGT 2 cut(s) 1422, 1520
HpyF10VI GCNNNNNNNGC 9 cut(s) 320, 477, 794, 869, 878, 924, 1373, 1423, 1442
HpyF3I CTNAG 7 cut(s) 152, 548, 705, 1106, 1145, 1169, 1514
HpySE526I ACGT 2 cut(s) 1422, 1520
HspAI GCGC 2 cut(s) 927, 1434
Kpn2I TCCGGA 1 cut(s) 1036
Kzo9I GATC 5 cut(s) 25, 36, 247, 802, 1326
LmnI GCTCC 1 cut(s) 205
Lsp1109I GCAGC 3 cut(s) 404, 517, 850
LweI GCATC 3 cut(s) 699, 850, 1385
MaeI CTAG 4 cut(s) 65, 315, 749, 1257
MaeII ACGT 2 cut(s) 1422, 1520
MalI GATC 5 cut(s) 27, 38, 249, 804, 1328
MbiI CCGCTC 1 cut(s) 757
MboI GATC 5 cut(s) 25, 36, 247, 802, 1326
MboII GAAGA 3 cut(s) 36, 86, 297
MfeI CAATTG 1 cut(s) 1348
MflI RGATCY 1 cut(s) 25
MhlI GDGCHC 2 cut(s) 405, 782
MlsI TGGCCA 1 cut(s) 1202
MluCI AATT 9 cut(s) 286, 555, 568, 633, 896, 931, 1284, 1348, 1355
MluNI TGGCCA 1 cut(s) 1202
MlyI GAGTC 2 cut(s) 203, 1390
MmeI TCCRAC 3 cut(s) 619, 756, 1390
Mox20I TGGCCA 1 cut(s) 1202
Mph1103I ATGCAT 1 cut(s) 1378
MroI TCCGGA 1 cut(s) 1036
MscI TGGCCA 1 cut(s) 1202
MseI TTAA 4 cut(s) 234, 357, 912, 996
MslI CAYNNNNRTG 4 cut(s) 416, 524, 858, 971
Msp20I TGGCCA 1 cut(s) 1202
MspI CCGG 4 cut(s) 389, 661, 1037, 1111
MspR9I CCNGG 6 cut(s) 23, 168, 261, 535, 662, 737
MunI CAATTG 1 cut(s) 1348
MvaI CCWGG 5 cut(s) 23, 168, 261, 535, 737
MvnI CGCG 1 cut(s) 1436
MwoI GCNNNNNNNGC 9 cut(s) 320, 477, 794, 869, 878, 924, 1373, 1423, 1442
NciI CCSGG 1 cut(s) 662
NdeI CATATG 3 cut(s) 96, 205, 868
NdeII GATC 5 cut(s) 25, 36, 247, 802, 1326
NheI GCTAGC 1 cut(s) 314
NlaIV GGNNCC 2 cut(s) 539, 1254
NmeAIII GCCGAG 1 cut(s) 182
NsiI ATGCAT 1 cut(s) 1378
NspI RCATGY 1 cut(s) 439
OliI CACNNNNGTG 1 cut(s) 524
PfeI GAWTC 5 cut(s) 642, 1000, 1033, 1064, 1246
PkrI GCNGC 5 cut(s) 394, 479, 532, 756, 865
PleI GAGTC 2 cut(s) 202, 1390
PpsI GAGTC 2 cut(s) 202, 1390
Ppu21I YACGTR 2 cut(s) 1423, 1521
Psp124BI GAGCTC 1 cut(s) 405
Psp6I CCWGG 5 cut(s) 21, 166, 259, 533, 735
PspGI CCWGG 5 cut(s) 21, 166, 259, 533, 735
PspN4I GGNNCC 2 cut(s) 539, 1254
PspPI GGNCC 3 cut(s) 538, 663, 1495
PsuI RGATCY 1 cut(s) 25
RsaI GTAC 3 cut(s) 499, 1143, 1421
RsaNI GTAC 3 cut(s) 498, 1142, 1420
RseI CAYNNNNRTG 4 cut(s) 416, 524, 858, 971
SacI GAGCTC 1 cut(s) 405
SalI GTCGAC 1 cut(s) 1027
SaqAI TTAA 4 cut(s) 234, 357, 912, 996
SatI GCNGC 5 cut(s) 393, 478, 531, 755, 864
Sau3AI GATC 5 cut(s) 25, 36, 247, 802, 1326
Sau96I GGNCC 3 cut(s) 538, 663, 1495
ScaI AGTACT 1 cut(s) 499
SchI GAGTC 2 cut(s) 203, 1390
ScrFI CCNGG 6 cut(s) 23, 168, 261, 535, 662, 737
SduI GDGCHC 2 cut(s) 405, 782
SfaNI GCATC 3 cut(s) 699, 850, 1385
SinI GGWCC 2 cut(s) 538, 1495
SmiMI CAYNNNNRTG 4 cut(s) 416, 524, 858, 971
Sse9I AATT 9 cut(s) 286, 555, 568, 633, 896, 931, 1284, 1348, 1355
SsiI CCGC 5 cut(s) 477, 480, 755, 786, 1436
SspMI CTAG 4 cut(s) 65, 315, 749, 1257
SstI GAGCTC 1 cut(s) 405
StyD4I CCNGG 6 cut(s) 21, 166, 259, 533, 660, 735
StyI CCWWGG 1 cut(s) 1269
TaaI ACNGT 2 cut(s) 1026, 1307
TaiI ACGT 2 cut(s) 1425, 1523
TaqI TCGA 3 cut(s) 405, 1028, 1473
TasI AATT 9 cut(s) 286, 555, 568, 633, 896, 931, 1284, 1348, 1355
TatI WGTACW 2 cut(s) 497, 1141
TauI GCSGC 2 cut(s) 480, 757
TfiI GAWTC 5 cut(s) 642, 1000, 1033, 1064, 1246
Tru1I TTAA 4 cut(s) 234, 357, 912, 996
Tru9I TTAA 4 cut(s) 234, 357, 912, 996
TscAI CASTG 6 cut(s) 325, 355, 799, 973, 1029, 1066
TseI GCWGC 3 cut(s) 392, 530, 863
TspDTI ATGAA 4 cut(s) 100, 372, 842, 898
TspGWI ACGGA 1 cut(s) 665
TspRI CASTG 6 cut(s) 325, 355, 799, 973, 1029, 1066
VpaK11BI GGWCC 2 cut(s) 538, 1495
XapI RAATTY 4 cut(s) 568, 896, 931, 1284
XceI RCATGY 1 cut(s) 439
XmiI GTMKAC 1 cut(s) 1028
XspI CTAG 4 cut(s) 65, 315, 749, 1257
ZrmI AGTACT 1 cut(s) 499
Zsp2I ATGCAT 1 cut(s) 1378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.