Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001154

Physical Location & Seq

Genomic Coordinates Reverse (-)

33534263 .. 33535556

Gene Structure 1294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013580

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGTTTCTGAGATGCTCCGATCTGTTAGCACAATTCTGTTCACCATTCTCCAACTGCTATGGCATGTTTGTATCACTTATGCTTTATCATGGTCTGCTCCTTTCTGAATATCTATTGGCACTTGAGGCCAAGTATGGATGCAAGCTCTGTATTGGTCCCTGCACAACAAAAGAAGAGGGGTTCTACTATGATGCATACTATGGCAGTTTGGGCTTAAATGATGAGCACTTAAAGAAAATTGAATCAGAGGTAGAGAAGGCTGTTAAGGCTTCTTCAGCCTACTGGAGGGGAAATAAAGATCATGAAAGTCTGCAGCGAGTTTATGGAATATCATATTCGGATAAAAACTATTGCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004829 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006435 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0030312 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071944 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon TGS tRNA-synt_2b tRNA_SAD

Protein Analysis

120

Amino Acids

13.65

Weight (kDa)

6.27

Isoelectric Point (pI)

34.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001154)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g08194
prunus_persica	Prupe.4G257700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0343671 RchiOBHm_Chr5g0072391 RchiOBHm_Chr6g0274461 RchiOBHm_Chr6g0284621
rosa_laevigata	RLG00000001201 RLG00000008793 RLG00000013285 RLG00000013580 RLG00000015412 RLG00000020159 RLG00000022735 RLG00000029912 RLG00000030782 RLG00000032954
rosa_multiflora	Rmu_sc0000233.1_g000006 Rmu_sc0001240.1_g000006 Rmu_sc0002352.1_g000014 Rmu_sc0003882.1_g000036 Rmu_sc0004016.1_g000017 Rmu_sc0004698.1_g000002 Rmu_sc0006651.1_g000003 Rmu_sc0009984.1_g000002 Rmu_sc0010945.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083960 Rroxscaffold_2G00137540 Rroxscaffold_2G00137550 Rroxscaffold_3G00226540 Rroxscaffold_3G00276350 Rroxscaffold_7G00175350
rosa_rugosa	Rorug02G0052000 Rorug04G0314300 Rorug05G0057300 Rorug06G0033500
rosa_samantha	Rh1CG381500 Rh2DG003400 Rh3BG333400 Rh4AG123000 Rh4AG311600 Rh4AG339700 Rh4CG303900 Rh4CG334100 Rh5AG318400 Rh5BG324000 Rh6AG407700 Rh6BG340400 Rh7AG126300 Rh7CG042400 Rh7CG042500 Rh7CG154400 Rh7CG166300 Rh7CG315500
rosa_wichuraiana	Rw5G010820 Rw5G026590 Rw6G003280 Rw6G021230 Rw7G013220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	345
Acc36I	ACCTGC	1 cut(s)	345
AcuI	CTGAAG	1 cut(s)	258
AfiI	CCNNNNNNNGG	1 cut(s)	285
AgsI	TTSAA	1 cut(s)	242
AluBI	AGCT	1 cut(s)	145
AluI	AGCT	1 cut(s)	145
Alw21I	GWGCWC	1 cut(s)	228
AoxI	GGCC	1 cut(s)	126
ApeKI	GCWGC	1 cut(s)	313
AspS9I	GGNCC	1 cut(s)	155
AsuHPI	GGTGA	1 cut(s)	33
AvaII	GGWCC	1 cut(s)	155
Bbv12I	GWGCWC	1 cut(s)	228
BbvI	GCAGC	1 cut(s)	325
BfmI	CTRYAG	1 cut(s)	311
BfuAI	ACCTGC	1 cut(s)	345
BisI	GCNGC	1 cut(s)	314
BlsI	GCNGC	1 cut(s)	315
Bme18I	GGWCC	1 cut(s)	155
BmgT120I	GGNCC	1 cut(s)	155
BmiI	GGNNCC	1 cut(s)	157
BmsI	GCATC	3 cut(s)	2, 128, 181
BpmI	CTGGAG	1 cut(s)	304
BpuEI	CTTGAG	1 cut(s)	143
Bsc4I	CCNNNNNNNGG	1 cut(s)	285
Bse1I	ACTGG	1 cut(s)	287
BseGI	GGATG	1 cut(s)	143
BseLI	CCNNNNNNNGG	1 cut(s)	285
BseNI	ACTGG	1 cut(s)	287
BseXI	GCAGC	1 cut(s)	325
BsgI	GTGCAG	1 cut(s)	145
BshFI	GGCC	1 cut(s)	128
BsiHKAI	GWGCWC	1 cut(s)	228
BslFI	GGGAC	1 cut(s)	141
BslI	CCNNNNNNNGG	1 cut(s)	285
BsmFI	GGGAC	1 cut(s)	141
BsnI	GGCC	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp143I	GATC	2 cut(s)	19, 298
BspANI	GGCC	1 cut(s)	128
BspHI	TCATGA	1 cut(s)	301
BspLI	GGNNCC	1 cut(s)	157
BspMAI	CTGCAG	1 cut(s)	315
BspMI	ACCTGC	1 cut(s)	345
BsrI	ACTGG	1 cut(s)	287
BssMI	GATC	2 cut(s)	19, 298
Bst6I	CTCTTC	1 cut(s)	168
BstC8I	GCNNGC	1 cut(s)	143
BstDEI	CTNAG	1 cut(s)	8
BstENI	CCTNNNNNAGG	1 cut(s)	283
BstF5I	GGATG	1 cut(s)	143
BstKTI	GATC	2 cut(s)	22, 301
BstMBI	GATC	2 cut(s)	19, 298
BstMWI	GCNNNNNNNGC	4 cut(s)	125, 210, 266, 275
BstNSI	RCATGY	1 cut(s)	67
BstSFI	CTRYAG	1 cut(s)	311
BstV1I	GCAGC	1 cut(s)	325
BsuRI	GGCC	1 cut(s)	128
BtsCI	GGATG	1 cut(s)	143
BveI	ACCTGC	1 cut(s)	345
Cac8I	GCNNGC	1 cut(s)	143
CciI	TCATGA	1 cut(s)	301
Cfr13I	GGNCC	1 cut(s)	155
CviAII	CATG	3 cut(s)	64, 89, 302
CviJI	RGCY	6 cut(s)	128, 145, 213, 260, 269, 278
CviKI_1	RGCY	6 cut(s)	128, 145, 213, 260, 269, 278
DdeI	CTNAG	1 cut(s)	8
DpnI	GATC	2 cut(s)	21, 300
DpnII	GATC	2 cut(s)	19, 298
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	155
Eco57I	CTGAAG	1 cut(s)	258
EcoNI	CCTNNNNNAGG	1 cut(s)	283
EcoT22I	ATGCAT	1 cut(s)	196
FaeI	CATG	3 cut(s)	67, 92, 305
FaqI	GGGAC	1 cut(s)	141
FatI	CATG	3 cut(s)	63, 88, 301
Fnu4HI	GCNGC	1 cut(s)	314
FokI	GGATG	1 cut(s)	150
Fsp4HI	GCNGC	1 cut(s)	314
GluI	GCNGC	1 cut(s)	314
GsuI	CTGGAG	1 cut(s)	304
HaeIII	GGCC	1 cut(s)	128
Hin1II	CATG	3 cut(s)	67, 92, 305
HinfI	GANTC	1 cut(s)	242
HphI	GGTGA	1 cut(s)	33
Hpy166II	GTNNAC	1 cut(s)	41
Hpy188I	TCNGA	5 cut(s)	9, 19, 106, 247, 340
Hpy188III	TCNNGA	1 cut(s)	302
Hpy8I	GTNNAC	1 cut(s)	41
HpyAV	CCTTC	1 cut(s)	250
HpyCH4V	TGCA	5 cut(s)	141, 162, 194, 313, 354
HpyF10VI	GCNNNNNNNGC	4 cut(s)	125, 210, 266, 275
HpyF3I	CTNAG	1 cut(s)	8
Hsp92II	CATG	3 cut(s)	67, 92, 305
Kzo9I	GATC	2 cut(s)	19, 298
LmnI	GCTCC	2 cut(s)	20, 102
LpnPI	CCDG	3 cut(s)	172, 268, 340
Lsp1109I	GCAGC	1 cut(s)	325
LweI	GCATC	3 cut(s)	2, 128, 181
MalI	GATC	2 cut(s)	21, 300
MboI	GATC	2 cut(s)	19, 298
MboII	GAAGA	2 cut(s)	185, 264
MhlI	GDGCHC	1 cut(s)	228
MluCI	AATT	2 cut(s)	32, 237
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	4 cut(s)	118, 169, 241, 279
Mph1103I	ATGCAT	1 cut(s)	196
MseI	TTAA	3 cut(s)	215, 230, 264
MwoI	GCNNNNNNNGC	4 cut(s)	125, 210, 266, 275
NdeII	GATC	2 cut(s)	19, 298
NlaIII	CATG	3 cut(s)	67, 92, 305
NlaIV	GGNNCC	1 cut(s)	157
NsiI	ATGCAT	1 cut(s)	196
NspI	RCATGY	1 cut(s)	67
PagI	TCATGA	1 cut(s)	301
PaqCI	CACCTGC	1 cut(s)	345
PfeI	GAWTC	1 cut(s)	242
PkrI	GCNGC	1 cut(s)	315
PspN4I	GGNNCC	1 cut(s)	157
PspPI	GGNCC	1 cut(s)	155
PstI	CTGCAG	1 cut(s)	315
SaqAI	TTAA	3 cut(s)	215, 230, 264
SatI	GCNGC	1 cut(s)	314
Sau3AI	GATC	2 cut(s)	19, 298
Sau96I	GGNCC	1 cut(s)	155
SduI	GDGCHC	1 cut(s)	228
SetI	ASST	3 cut(s)	147, 252, 359
SfaNI	GCATC	3 cut(s)	2, 128, 181
SfcI	CTRYAG	1 cut(s)	311
SgeI	CNNG	9 cut(s)	76, 101, 134, 142, 154, 171, 295, 314, 329
SinI	GGWCC	1 cut(s)	155
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	2 cut(s)	32, 237
TasI	AATT	2 cut(s)	32, 237
TfiI	GAWTC	1 cut(s)	242
Tru1I	TTAA	3 cut(s)	215, 230, 264
Tru9I	TTAA	3 cut(s)	215, 230, 264
TseI	GCWGC	1 cut(s)	313
TspDTI	ATGAA	1 cut(s)	318
VpaK11BI	GGWCC	1 cut(s)	155
XagI	CCTNNNNNAGG	1 cut(s)	283
XceI	RCATGY	1 cut(s)	67
Zsp2I	ATGCAT	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.