Rh7CG166300
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001154
Physical Location & Seq
Reverse (-)
13768077 .. 13768337
261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG166300.1

Sequence Viewer

Length: 261 bp
ATGGCTAGCACACTTCGCTCCTTTGTGGATGTGACCAAGACACACTTGGAGACTATGAAAGAAGTACTTTTGAATGACCATGCAGCATCTACAAAAAGAGGTAAACTTGTCGAAGAGCTTATGAAAATTGAAGGTTTGAATGATTATGATGTGCTTGAGGCTACTGCTATAATTATTGGCGATGACTCCAAAATTGAGCTCTTGTTTAGCTTACCTGACAATTTGAAGAGCCAATGGATTTACAAGCTTCTGAACCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

86

Amino Acids

9.76

Weight (kDa)

5.02

Isoelectric Point (pI)

34.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 66
AgsI TTSAA 4 cut(s) 73, 131, 139, 226
AluBI AGCT 4 cut(s) 118, 199, 210, 247
AluI AGCT 4 cut(s) 118, 199, 210, 247
Alw21I GWGCWC 1 cut(s) 201
Alw26I GTCTC 1 cut(s) 44
ApeKI GCWGC 1 cut(s) 83
AsuNHI GCTAGC 1 cut(s) 5
BanII GRGCYC 1 cut(s) 201
Bbv12I GWGCWC 1 cut(s) 201
BbvI GCAGC 1 cut(s) 95
BcoDI GTCTC 1 cut(s) 44
BfaI CTAG 1 cut(s) 6
BisI GCNGC 1 cut(s) 84
BlsI GCNGC 1 cut(s) 85
BmcAI AGTACT 1 cut(s) 66
BmsI GCATC 1 cut(s) 95
BmtI GCTAGC 1 cut(s) 9
BpuEI CTTGAG 1 cut(s) 176
Bse1I ACTGG 1 cut(s) 256
BseGI GGATG 1 cut(s) 34
BseNI ACTGG 1 cut(s) 256
BseXI GCAGC 1 cut(s) 95
BsiHKAI GWGCWC 1 cut(s) 201
BsmAI GTCTC 1 cut(s) 44
Bsp1286I GDGCHC 1 cut(s) 201
BspOI GCTAGC 1 cut(s) 9
BspQI GCTCTTC 2 cut(s) 108, 221
BsrI ACTGG 1 cut(s) 256
Bst6I CTCTTC 2 cut(s) 108, 221
BstC8I GCNNGC 1 cut(s) 7
BstF5I GGATG 1 cut(s) 34
BstMAI GTCTC 1 cut(s) 44
BstMWI GCNNNNNNNGC 1 cut(s) 15
BstV1I GCAGC 1 cut(s) 95
BtgZI GCGATG 1 cut(s) 195
BtsCI GGATG 1 cut(s) 34
Cac8I GCNNGC 1 cut(s) 7
Csp6I GTAC 1 cut(s) 65
CviAII CATG 1 cut(s) 80
CviJI RGCY 7 cut(s) 5, 118, 161, 199, 210, 231, 247
CviKI_1 RGCY 7 cut(s) 5, 118, 161, 199, 210, 231, 247
CviQI GTAC 1 cut(s) 65
Eam1104I CTCTTC 2 cut(s) 108, 221
EarI CTCTTC 2 cut(s) 108, 221
Ecl136II GAGCTC 1 cut(s) 199
Eco24I GRGCYC 1 cut(s) 201
Eco53kI GAGCTC 1 cut(s) 199
EcoICRI GAGCTC 1 cut(s) 199
EcoT38I GRGCYC 1 cut(s) 201
FaeI CATG 1 cut(s) 83
FaiI YATR 5 cut(s) 56, 81, 122, 147, 170
FalI AAGNNNNNCTT 4 cut(s) 29, 61, 51, 83
FatI CATG 1 cut(s) 79
Fnu4HI GCNGC 1 cut(s) 84
FokI GGATG 1 cut(s) 41
FriOI GRGCYC 1 cut(s) 201
Fsp4HI GCNGC 1 cut(s) 84
FspBI CTAG 1 cut(s) 6
GluI GCNGC 1 cut(s) 84
Hin1II CATG 1 cut(s) 83
HindIII AAGCTT 1 cut(s) 245
HinfI GANTC 1 cut(s) 185
Hpy166II GTNNAC 1 cut(s) 104
Hpy188I TCNGA 1 cut(s) 252
Hpy8I GTNNAC 1 cut(s) 104
HpyAV CCTTC 1 cut(s) 125
HpyCH4V TGCA 1 cut(s) 83
HpyF10VI GCNNNNNNNGC 1 cut(s) 15
Hsp92II CATG 1 cut(s) 83
LguI GCTCTTC 2 cut(s) 108, 221
LmnI GCTCC 1 cut(s) 23
LpnPI CCDG 1 cut(s) 228
Lsp1109I GCAGC 1 cut(s) 95
LweI GCATC 1 cut(s) 95
MaeI CTAG 1 cut(s) 6
MaeIII GTNAC 1 cut(s) 31
MboII GAAGA 2 cut(s) 125, 238
MhlI GDGCHC 1 cut(s) 201
MluCI AATT 4 cut(s) 126, 171, 192, 220
MlyI GAGTC 1 cut(s) 179
MnlI CCTC 2 cut(s) 92, 151
MwoI GCNNNNNNNGC 1 cut(s) 15
NheI GCTAGC 1 cut(s) 5
NlaIII CATG 1 cut(s) 83
NmuCI GTSAC 1 cut(s) 31
PciSI GCTCTTC 2 cut(s) 108, 221
PkrI GCNGC 1 cut(s) 85
PleI GAGTC 1 cut(s) 179
PpsI GAGTC 1 cut(s) 179
Psp124BI GAGCTC 1 cut(s) 201
RsaI GTAC 1 cut(s) 66
RsaNI GTAC 1 cut(s) 65
SacI GAGCTC 1 cut(s) 201
SapI GCTCTTC 2 cut(s) 108, 221
SatI GCNGC 1 cut(s) 84
ScaI AGTACT 1 cut(s) 66
SchI GAGTC 1 cut(s) 179
SduI GDGCHC 1 cut(s) 201
SetI ASST 7 cut(s) 103, 120, 136, 201, 212, 217, 249
SfaNI GCATC 1 cut(s) 95
SgeI CNNG 9 cut(s) 18, 49, 58, 92, 119, 167, 214, 227, 256
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 4 cut(s) 126, 171, 192, 220
SspMI CTAG 1 cut(s) 6
SstI GAGCTC 1 cut(s) 201
TaqI TCGA 1 cut(s) 111
TasI AATT 4 cut(s) 126, 171, 192, 220
TatI WGTACW 1 cut(s) 64
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 1 cut(s) 83
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 2 cut(s) 71, 137
XcmI CCANNNNNNNNNTGG 1 cut(s) 43
XspI CTAG 1 cut(s) 6
ZrmI AGTACT 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.