Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001154

Physical Location & Seq

Genomic Coordinates Forward (+)

56432696 .. 56455058

Gene Structure 22363 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG303900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGTACCTTGATTTAGTTAAACAGCTTCCAAAATTAATCTGGTTATCATCTTCCCATCTTCCTCACGTAGCAGCTTCCAGGATGGATTTGCAAGCAAACTCAAGATCCTCAACTAGTAGAAGTGGAAGAAATAAAGAGAAGCAACCATCACACACCTGGACCCCTATTGAAGATGTAGCTCTAGTTGAGGCTTTAACTGAACTTTGTGTTTCTGGGACCTGGAAGAGAGCCAATGGGTTAGGAGCTGAAGGACCTGCTGAAGCGGATGAAGATTTGAATAATGATAATGAATTTGTTGATCTCGAAGGAGATGGTTTGCCTGAAAATGTTGTTCCTACACCTGCTACTCGTACAACTTCTTCCGCTTCTAATTCAACTCGGACTAGAAAGCGAGCAAGGGACACTTATGCCCAATGCTTGGGAGACATGTCTAGCACACTTCGCTCCTTTGTGGATGTGACCAAGACACACTTGGAGACTATGAAAGAAGTACTTTTGAATGACCATGCAACATCTACAAAAAGAGGTAAACTTGTCGAAGAGCTTATGAAAATTGAAGGTTTGAATGATTATGATGTGCTTGAGGCTGCTGCTACTATTATTGGTGATGACTCCAAAATTGAGCTCTTGTTCAGCTTACCTAACAATTTAAAGAGCCAATGGATTTACAAGCTTCTTAACCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_3

Protein Analysis

228

Amino Acids

25.28

Weight (kDa)

5.42

Isoelectric Point (pI)

48.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001154)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g08194
prunus_persica	Prupe.4G257700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0343671 RchiOBHm_Chr5g0072391 RchiOBHm_Chr6g0274461 RchiOBHm_Chr6g0284621
rosa_laevigata	RLG00000001201 RLG00000008793 RLG00000013285 RLG00000013580 RLG00000015412 RLG00000020159 RLG00000022735 RLG00000029912 RLG00000030782 RLG00000032954
rosa_multiflora	Rmu_sc0000233.1_g000006 Rmu_sc0001240.1_g000006 Rmu_sc0002352.1_g000014 Rmu_sc0003882.1_g000036 Rmu_sc0004016.1_g000017 Rmu_sc0004698.1_g000002 Rmu_sc0006651.1_g000003 Rmu_sc0009984.1_g000002 Rmu_sc0010945.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083960 Rroxscaffold_2G00137540 Rroxscaffold_2G00137550 Rroxscaffold_3G00226540 Rroxscaffold_3G00276350 Rroxscaffold_7G00175350
rosa_rugosa	Rorug02G0052000 Rorug04G0314300 Rorug05G0057300 Rorug06G0033500
rosa_samantha	Rh1CG381500 Rh2DG003400 Rh3BG333400 Rh4AG123000 Rh4AG311600 Rh4AG339700 Rh4CG303900 Rh4CG334100 Rh5AG318400 Rh5BG324000 Rh6AG407700 Rh6BG340400 Rh7AG126300 Rh7CG042400 Rh7CG042500 Rh7CG154400 Rh7CG166300 Rh7CG315500
rosa_wichuraiana	Rw5G010820 Rw5G026590 Rw6G003280 Rw6G021230 Rw7G013220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	349
Acc36I	ACCTGC	2 cut(s)	262, 349
AccB7I	CCANNNNNTGG	1 cut(s)	418
AciI	CCGC	2 cut(s)	263, 363
AclWI	GGATC	1 cut(s)	99
AcsI	RAATTY	1 cut(s)	290
AcuI	CTGAAG	2 cut(s)	267, 279
AfaI	GTAC	3 cut(s)	5, 352, 492
AfiI	CCNNNNNNNGG	1 cut(s)	418
AflIII	ACRYGT	1 cut(s)	426
AgsI	TTSAA	6 cut(s)	170, 277, 375, 499, 557, 565
AhlI	ACTAGT	1 cut(s)	113
AjnI	CCWGG	3 cut(s)	77, 155, 218
AluBI	AGCT	8 cut(s)	25, 74, 179, 245, 544, 625, 636, 673
AluI	AGCT	8 cut(s)	25, 74, 179, 245, 544, 625, 636, 673
Alw21I	GWGCWC	1 cut(s)	627
Alw26I	GTCTC	2 cut(s)	417, 470
AlwI	GGATC	1 cut(s)	99
ApeKI	GCWGC	3 cut(s)	71, 587, 590
ApoI	RAATTY	1 cut(s)	290
AseI	ATTAAT	1 cut(s)	35
AspS9I	GGNCC	3 cut(s)	159, 216, 251
AsuHPI	GGTGA	1 cut(s)	617
AvaII	GGWCC	3 cut(s)	159, 216, 251
BanII	GRGCYC	1 cut(s)	627
BarI	GAAGNNNNNNTAC	2 cut(s)	343, 375
Bbv12I	GWGCWC	1 cut(s)	627
BbvI	GCAGC	3 cut(s)	83, 574, 577
BccI	CCATC	4 cut(s)	63, 76, 154, 305
BciT130I	CCWGG	3 cut(s)	79, 157, 220
BcoDI	GTCTC	2 cut(s)	417, 470
BcuI	ACTAGT	1 cut(s)	113
BfaI	CTAG	5 cut(s)	114, 182, 384, 432, 685
BfuAI	ACCTGC	2 cut(s)	262, 349
BisI	GCNGC	3 cut(s)	72, 588, 591
BlsI	GCNGC	3 cut(s)	73, 589, 592
BmcAI	AGTACT	1 cut(s)	492
Bme1390I	CCNGG	3 cut(s)	79, 157, 220
Bme18I	GGWCC	3 cut(s)	159, 216, 251
BmgT120I	GGNCC	3 cut(s)	159, 216, 251
BmiI	GGNNCC	2 cut(s)	161, 217
BmrFI	CCNGG	3 cut(s)	79, 157, 220
BpuEI	CTTGAG	2 cut(s)	85, 602
BsaAI	YACGTR	1 cut(s)	67
Bsc4I	CCNNNNNNNGG	1 cut(s)	418
BseBI	CCWGG	3 cut(s)	79, 157, 220
BseGI	GGATG	3 cut(s)	87, 271, 460
BseLI	CCNNNNNNNGG	1 cut(s)	418
BseXI	GCAGC	3 cut(s)	83, 574, 577
BsiHKAI	GWGCWC	1 cut(s)	627
BslFI	GGGAC	2 cut(s)	229, 413
BslI	CCNNNNNNNGG	1 cut(s)	418
BsmAI	GTCTC	2 cut(s)	417, 470
BsmFI	GGGAC	2 cut(s)	229, 413
Bsp1286I	GDGCHC	1 cut(s)	627
Bsp143I	GATC	2 cut(s)	104, 298
BspACI	CCGC	2 cut(s)	263, 363
BspLI	GGNNCC	2 cut(s)	161, 217
BspMI	ACCTGC	2 cut(s)	262, 349
BspPI	GGATC	1 cut(s)	99
BspQI	GCTCTTC	1 cut(s)	534
BssMI	GATC	2 cut(s)	104, 298
Bst2UI	CCWGG	3 cut(s)	79, 157, 220
Bst6I	CTCTTC	2 cut(s)	218, 534
BstBAI	YACGTR	1 cut(s)	67
BstC8I	GCNNGC	2 cut(s)	93, 393
BstF5I	GGATG	3 cut(s)	87, 271, 460
BstKTI	GATC	2 cut(s)	107, 301
BstMAI	GTCTC	2 cut(s)	417, 470
BstMBI	GATC	2 cut(s)	104, 298
BstMWI	GCNNNNNNNGC	1 cut(s)	441
BstNI	CCWGG	3 cut(s)	79, 157, 220
BstNSI	RCATGY	1 cut(s)	430
BstSCI	CCNGG	3 cut(s)	77, 155, 218
BstV1I	GCAGC	3 cut(s)	83, 574, 577
BstX2I	RGATCY	1 cut(s)	104
BstYI	RGATCY	1 cut(s)	104
BtsCI	GGATG	3 cut(s)	87, 271, 460
BveI	ACCTGC	2 cut(s)	262, 349
Cac8I	GCNNGC	2 cut(s)	93, 393
Cfr13I	GGNCC	3 cut(s)	159, 216, 251
Csp6I	GTAC	3 cut(s)	4, 351, 491
CviAII	CATG	2 cut(s)	427, 506
CviQI	GTAC	3 cut(s)	4, 351, 491
DpnI	GATC	2 cut(s)	106, 300
DpnII	GATC	2 cut(s)	104, 298
DraI	TTTAAA	1 cut(s)	651
Eam1104I	CTCTTC	2 cut(s)	218, 534
EarI	CTCTTC	2 cut(s)	218, 534
Ecl136II	GAGCTC	1 cut(s)	625
Eco24I	GRGCYC	1 cut(s)	627
Eco47I	GGWCC	3 cut(s)	159, 216, 251
Eco53kI	GAGCTC	1 cut(s)	625
Eco57I	CTGAAG	2 cut(s)	267, 279
EcoICRI	GAGCTC	1 cut(s)	625
EcoO109I	RGGNCCY	2 cut(s)	216, 251
EcoRII	CCWGG	3 cut(s)	77, 155, 218
EcoT38I	GRGCYC	1 cut(s)	627
FaeI	CATG	2 cut(s)	430, 509
FaiI	YATR	6 cut(s)	408, 428, 482, 507, 548, 573
FalI	AAGNNNNNCTT	6 cut(s)	388, 420, 455, 487, 477, 509
FaqI	GGGAC	2 cut(s)	229, 413
FatI	CATG	2 cut(s)	426, 505
Fnu4HI	GCNGC	3 cut(s)	72, 588, 591
FokI	GGATG	3 cut(s)	94, 278, 467
FriOI	GRGCYC	1 cut(s)	627
Fsp4HI	GCNGC	3 cut(s)	72, 588, 591
FspBI	CTAG	5 cut(s)	114, 182, 384, 432, 685
GluI	GCNGC	3 cut(s)	72, 588, 591
Hin1II	CATG	2 cut(s)	430, 509
HindIII	AAGCTT	1 cut(s)	671
HinfI	GANTC	1 cut(s)	611
HphI	GGTGA	1 cut(s)	617
Hpy166II	GTNNAC	1 cut(s)	530
Hpy188I	TCNGA	1 cut(s)	381
Hpy188III	TCNNGA	2 cut(s)	102, 302
Hpy8I	GTNNAC	1 cut(s)	530
HpyAV	CCTTC	3 cut(s)	242, 299, 551
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	2 cut(s)	91, 509
HpyF10VI	GCNNNNNNNGC	1 cut(s)	441
HpySE526I	ACGT	1 cut(s)	66
Hsp92II	CATG	2 cut(s)	430, 509
Kzo9I	GATC	2 cut(s)	104, 298
LguI	GCTCTTC	1 cut(s)	534
LmnI	GCTCC	2 cut(s)	242, 449
Lsp1109I	GCAGC	3 cut(s)	83, 574, 577
MaeI	CTAG	5 cut(s)	114, 182, 384, 432, 685
MaeII	ACGT	1 cut(s)	66
MaeIII	GTNAC	1 cut(s)	457
MalI	GATC	2 cut(s)	106, 300
MboI	GATC	2 cut(s)	104, 298
MboII	GAAGA	8 cut(s)	42, 50, 138, 182, 235, 281, 351, 551
MflI	RGATCY	1 cut(s)	104
MhlI	GDGCHC	1 cut(s)	627
MluCI	AATT	6 cut(s)	32, 290, 370, 552, 618, 646
MlyI	GAGTC	1 cut(s)	605
MnlI	CCTC	5 cut(s)	72, 118, 181, 518, 577
MseI	TTAA	5 cut(s)	18, 35, 194, 650, 678
MspR9I	CCNGG	3 cut(s)	79, 157, 220
MvaI	CCWGG	3 cut(s)	79, 157, 220
MwoI	GCNNNNNNNGC	1 cut(s)	441
NdeII	GATC	2 cut(s)	104, 298
NlaIII	CATG	2 cut(s)	430, 509
NlaIV	GGNNCC	2 cut(s)	161, 217
NmuCI	GTSAC	1 cut(s)	457
NspI	RCATGY	1 cut(s)	430
PaqCI	CACCTGC	1 cut(s)	349
PciI	ACATGT	1 cut(s)	426
PciSI	GCTCTTC	1 cut(s)	534
PflMI	CCANNNNNTGG	1 cut(s)	418
PfoI	TCCNGGA	1 cut(s)	77
PkrI	GCNGC	3 cut(s)	73, 589, 592
PleI	GAGTC	1 cut(s)	605
PpsI	GAGTC	1 cut(s)	605
Ppu21I	YACGTR	1 cut(s)	67
PpuMI	RGGWCCY	2 cut(s)	216, 251
PscI	ACATGT	1 cut(s)	426
PshBI	ATTAAT	1 cut(s)	35
Psp124BI	GAGCTC	1 cut(s)	627
Psp5II	RGGWCCY	2 cut(s)	216, 251
Psp6I	CCWGG	3 cut(s)	77, 155, 218
PspGI	CCWGG	3 cut(s)	77, 155, 218
PspN4I	GGNNCC	2 cut(s)	161, 217
PspPI	GGNCC	3 cut(s)	159, 216, 251
PspPPI	RGGWCCY	2 cut(s)	216, 251
PsuI	RGATCY	1 cut(s)	104
RsaI	GTAC	3 cut(s)	5, 352, 492
RsaNI	GTAC	3 cut(s)	4, 351, 491
SacI	GAGCTC	1 cut(s)	627
SapI	GCTCTTC	1 cut(s)	534
SaqAI	TTAA	5 cut(s)	18, 35, 194, 650, 678
SatI	GCNGC	3 cut(s)	72, 588, 591
Sau3AI	GATC	2 cut(s)	104, 298
Sau96I	GGNCC	3 cut(s)	159, 216, 251
ScaI	AGTACT	1 cut(s)	492
SchI	GAGTC	1 cut(s)	605
ScrFI	CCNGG	3 cut(s)	79, 157, 220
SduI	GDGCHC	1 cut(s)	627
SinI	GGWCC	3 cut(s)	159, 216, 251
SmlI	CTYRAG	2 cut(s)	100, 581
SmoI	CTYRAG	2 cut(s)	100, 581
SpeI	ACTAGT	1 cut(s)	113
Sse9I	AATT	6 cut(s)	32, 290, 370, 552, 618, 646
SsiI	CCGC	2 cut(s)	263, 363
SspMI	CTAG	5 cut(s)	114, 182, 384, 432, 685
SstI	GAGCTC	1 cut(s)	627
StyD4I	CCNGG	3 cut(s)	77, 155, 218
TaiI	ACGT	1 cut(s)	69
TaqI	TCGA	2 cut(s)	303, 537
TasI	AATT	6 cut(s)	32, 290, 370, 552, 618, 646
TatI	WGTACW	1 cut(s)	490
Tru1I	TTAA	5 cut(s)	18, 35, 194, 650, 678
Tru9I	TTAA	5 cut(s)	18, 35, 194, 650, 678
TseFI	GTSAC	1 cut(s)	457
TseI	GCWGC	3 cut(s)	71, 587, 590
Tsp45I	GTSAC	1 cut(s)	457
TspDTI	ATGAA	4 cut(s)	282, 303, 497, 563
Van91I	CCANNNNNTGG	1 cut(s)	418
VpaK11BI	GGWCC	3 cut(s)	159, 216, 251
VspI	ATTAAT	1 cut(s)	35
XapI	RAATTY	1 cut(s)	290
XceI	RCATGY	1 cut(s)	430
XcmI	CCANNNNNNNNNTGG	3 cut(s)	36, 153, 469
XspI	CTAG	5 cut(s)	114, 182, 384, 432, 685
ZrmI	AGTACT	1 cut(s)	492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.