Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004016.1

Orthogroup ID

OG0001154

Physical Location & Seq

Genomic Coordinates Forward (+)

81445 .. 84694

Gene Structure 3250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004016.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

atgtcccagaagcggacaagtttaggtaccgaagtaggaagaatgaaattgctactaatatcttgggagtatgctcccaagatatgtaattcatttatgtattaccgggttgggagggttcggctgcagattcacgagtactacgtgatgccattagtaggagacatggttctcggggtgctagatgggacatatattagagtacatgtcccagaagcggacaagtttaggtaccgaagtaggaagaatgaaattgctactaatgtcttgggagtatgctcccaagatatgcaattcatttatgtattaccgggttgggagggttcggctgcagattcacgagtactacgtgatgccattagtaggagacatgggttccgagtcccccatggatattactaccttgttgatgctgggtatccaaatggggaggggtttcttgctccatatagaggtcagagatatcatttaaatgattggagagaaggataccaacctaccacccccgaagaattttttaatatgaagcattcttcatctaggaatgttcacaaggaagccaaaggactaagacttaaaccattcattcattatgatagtttggtggaagcttttgggagagatagagccaatgggttaggagctgaaggatctgctaatgcggatgaagatttgaataatgataatgaatttgttgatcttgaaggagatggtttgcctgaaaatattgttcctacacctgctactcgtacaacttcttctgcttctaattcaactcgaactagaaagcgagcaagggacgcttatgctcaatgcttgggagacatggctagcacacttcgctcctttgtggatgtgaccaagacacacttggagactatgaaagaagtacttttgaatgaccatgcaacatctacaaaaagaggtaaacttgtcaaagagcttatgaaaattgaaggtttgaatgattatgatgtgcttgaggctgctgctgcaattattggcgatgattccaaaattgagctcttgttcagcttacctgacaatttaacgagccaatggatttacaagcttcttaaccactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

361

Amino Acids

40.97

Weight (kDa)

6.84

Isoelectric Point (pI)

40.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001154)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g08194
prunus_persica	Prupe.4G257700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0343671 RchiOBHm_Chr5g0072391 RchiOBHm_Chr6g0274461 RchiOBHm_Chr6g0284621
rosa_laevigata	RLG00000001201 RLG00000008793 RLG00000013285 RLG00000013580 RLG00000015412 RLG00000020159 RLG00000022735 RLG00000029912 RLG00000030782 RLG00000032954
rosa_multiflora	Rmu_sc0000233.1_g000006 Rmu_sc0001240.1_g000006 Rmu_sc0002352.1_g000014 Rmu_sc0003882.1_g000036 Rmu_sc0004016.1_g000017 Rmu_sc0004698.1_g000002 Rmu_sc0006651.1_g000003 Rmu_sc0009984.1_g000002 Rmu_sc0010945.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083960 Rroxscaffold_2G00137540 Rroxscaffold_2G00137550 Rroxscaffold_3G00226540 Rroxscaffold_3G00276350 Rroxscaffold_7G00175350
rosa_rugosa	Rorug02G0052000 Rorug04G0314300 Rorug05G0057300 Rorug06G0033500
rosa_samantha	Rh1CG381500 Rh2DG003400 Rh3BG333400 Rh4AG123000 Rh4AG311600 Rh4AG339700 Rh4CG303900 Rh4CG334100 Rh5AG318400 Rh5BG324000 Rh6AG407700 Rh6BG340400 Rh7AG126300 Rh7CG042400 Rh7CG042500 Rh7CG154400 Rh7CG166300 Rh7CG315500
rosa_wichuraiana	Rw5G010820 Rw5G026590 Rw6G003280 Rw6G021230 Rw7G013220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	748
Acc36I	ACCTGC	1 cut(s)	748
Acc65I	GGTACC	2 cut(s)	26, 231
AccB1I	GGYRCC	2 cut(s)	26, 231
AciI	CCGC	3 cut(s)	13, 218, 662
AclWI	GGATC	1 cut(s)	658
AcsI	RAATTY	2 cut(s)	512, 689
AcuI	CTGAAG	1 cut(s)	666
AfaI	GTAC	7 cut(s)	28, 140, 204, 233, 345, 751, 891
AfiI	CCNNNNNNNGG	5 cut(s)	12, 158, 217, 363, 452
AflIII	ACRYGT	1 cut(s)	205
AgsI	TTSAA	6 cut(s)	676, 704, 774, 898, 956, 964
AloI	GAACNNNNNNTCC	2 cut(s)	153, 185
AluBI	AGCT	6 cut(s)	611, 644, 943, 1024, 1035, 1072
AluI	AGCT	6 cut(s)	611, 644, 943, 1024, 1035, 1072
Alw21I	GWGCWC	1 cut(s)	1026
Alw26I	GTCTC	4 cut(s)	156, 361, 816, 869
AlwI	GGATC	1 cut(s)	658
Ama87I	CYCGRG	1 cut(s)	173
ApeKI	GCWGC	5 cut(s)	124, 329, 986, 989, 992
ApoI	RAATTY	2 cut(s)	512, 689
Asp718I	GGTACC	2 cut(s)	26, 231
AsuC2I	CCSGG	2 cut(s)	107, 312
AsuNHI	GCTAGC	1 cut(s)	830
AvaI	CYCGRG	1 cut(s)	173
BaeI	ACNNNNGTAYC	4 cut(s)	18, 51, 223, 256
BanI	GGYRCC	2 cut(s)	26, 231
BanII	GRGCYC	1 cut(s)	1026
BarI	GAAGNNNNNNTAC	2 cut(s)	742, 774
BauI	CACGAG	2 cut(s)	134, 339
Bbv12I	GWGCWC	1 cut(s)	1026
BbvI	GCAGC	5 cut(s)	111, 316, 973, 976, 979
BccI	CCATC	2 cut(s)	179, 704
BciVI	GTATCC	2 cut(s)	429, 482
BcnI	CCSGG	2 cut(s)	107, 312
BcoDI	GTCTC	4 cut(s)	156, 361, 816, 869
BfaI	CTAG	5 cut(s)	182, 540, 783, 831, 1084
BfmI	CTRYAG	2 cut(s)	125, 330
BfuAI	ACCTGC	1 cut(s)	748
BfuI	GTATCC	2 cut(s)	429, 482
BisI	GCNGC	5 cut(s)	125, 330, 987, 990, 993
BlsI	GCNGC	5 cut(s)	126, 331, 988, 991, 994
BmcAI	AGTACT	3 cut(s)	140, 345, 891
Bme1390I	CCNGG	2 cut(s)	107, 312
BmeT110I	CYCGRG	1 cut(s)	173
BmiI	GGNNCC	3 cut(s)	28, 233, 377
BmrFI	CCNGG	2 cut(s)	107, 312
BmsI	GCATC	3 cut(s)	138, 343, 400
BmtI	GCTAGC	1 cut(s)	834
BpuEI	CTTGAG	1 cut(s)	1001
BpuMI	CCSGG	2 cut(s)	107, 312
BsaAI	YACGTR	2 cut(s)	145, 350
BsaJI	CCNNGG	1 cut(s)	388
BsaXI	ACNNNNNCTCC	2 cut(s)	153, 183
Bsc4I	CCNNNNNNNGG	5 cut(s)	12, 158, 217, 363, 452
BseDI	CCNNGG	1 cut(s)	388
BseGI	GGATG	2 cut(s)	670, 859
BseLI	CCNNNNNNNGG	5 cut(s)	12, 158, 217, 363, 452
BseXI	GCAGC	5 cut(s)	111, 316, 973, 976, 979
BseYI	CCCAGC	1 cut(s)	413
BshNI	GGYRCC	2 cut(s)	26, 231
BsiHKAI	GWGCWC	1 cut(s)	1026
BsiHKCI	CYCGRG	1 cut(s)	173
BsiSI	CCGG	2 cut(s)	106, 311
BslFI	GGGAC	4 cut(s)	194, 202, 368, 812
BslI	CCNNNNNNNGG	5 cut(s)	12, 158, 217, 363, 452
BsmAI	GTCTC	4 cut(s)	156, 361, 816, 869
BsmFI	GGGAC	4 cut(s)	194, 202, 368, 812
BsmI	GAATGC	1 cut(s)	529
BsoBI	CYCGRG	1 cut(s)	173
Bsp1286I	GDGCHC	1 cut(s)	1026
Bsp143I	GATC	2 cut(s)	650, 697
Bsp19I	CCATGG	1 cut(s)	388
BspACI	CCGC	3 cut(s)	13, 218, 662
BspLI	GGNNCC	3 cut(s)	28, 233, 377
BspMAI	CTGCAG	2 cut(s)	129, 334
BspMI	ACCTGC	1 cut(s)	748
BspOI	GCTAGC	1 cut(s)	834
BspPI	GGATC	1 cut(s)	658
BspT107I	GGYRCC	2 cut(s)	26, 231
BssECI	CCNNGG	1 cut(s)	388
BssMI	GATC	2 cut(s)	650, 697
BssSI	CACGAG	2 cut(s)	134, 339
BssT1I	CCWWGG	1 cut(s)	388
Bst2BI	CACGAG	2 cut(s)	134, 339
BstBAI	YACGTR	2 cut(s)	145, 350
BstC8I	GCNNGC	2 cut(s)	792, 832
BstDEI	CTNAG	1 cut(s)	569
BstDSI	CCRYGG	1 cut(s)	388
BstF5I	GGATG	2 cut(s)	670, 859
BstKTI	GATC	2 cut(s)	653, 700
BstMAI	GTCTC	4 cut(s)	156, 361, 816, 869
BstMBI	GATC	2 cut(s)	650, 697
BstMWI	GCNNNNNNNGC	3 cut(s)	800, 840, 992
BstNSI	RCATGY	1 cut(s)	209
BstSCI	CCNGG	2 cut(s)	105, 310
BstSFI	CTRYAG	2 cut(s)	125, 330
BstV1I	GCAGC	5 cut(s)	111, 316, 973, 976, 979
BstX2I	RGATCY	1 cut(s)	650
BstYI	RGATCY	1 cut(s)	650
BsuI	GTATCC	2 cut(s)	429, 482
BtgI	CCRYGG	1 cut(s)	388
BtgZI	GCGATG	1 cut(s)	1020
BtsCI	GGATG	2 cut(s)	670, 859
BveI	ACCTGC	1 cut(s)	748
Cac8I	GCNNGC	2 cut(s)	792, 832
CseI	GACGC	1 cut(s)	809
Csp6I	GTAC	7 cut(s)	27, 139, 203, 232, 344, 750, 890
CviAII	CATG	6 cut(s)	166, 206, 371, 389, 826, 905
CviQI	GTAC	7 cut(s)	27, 139, 203, 232, 344, 750, 890
DdeI	CTNAG	1 cut(s)	569
DpnI	GATC	2 cut(s)	652, 699
DpnII	GATC	2 cut(s)	650, 697
DraI	TTTAAA	1 cut(s)	471
Ecl136II	GAGCTC	1 cut(s)	1024
Eco130I	CCWWGG	1 cut(s)	388
Eco24I	GRGCYC	1 cut(s)	1026
Eco32I	GATATC	1 cut(s)	464
Eco53kI	GAGCTC	1 cut(s)	1024
Eco57I	CTGAAG	1 cut(s)	666
Eco88I	CYCGRG	1 cut(s)	173
EcoICRI	GAGCTC	1 cut(s)	1024
EcoRV	GATATC	1 cut(s)	464
EcoT14I	CCWWGG	1 cut(s)	388
EcoT38I	GRGCYC	1 cut(s)	1026
ErhI	CCWWGG	1 cut(s)	388
FaeI	CATG	6 cut(s)	169, 209, 374, 392, 829, 908
FalI	AAGNNNNNCTT	6 cut(s)	787, 819, 854, 886, 876, 908
FaqI	GGGAC	4 cut(s)	194, 202, 368, 812
FatI	CATG	6 cut(s)	165, 205, 370, 388, 825, 904
Fnu4HI	GCNGC	5 cut(s)	125, 330, 987, 990, 993
FokI	GGATG	2 cut(s)	677, 866
FriOI	GRGCYC	1 cut(s)	1026
Fsp4HI	GCNGC	5 cut(s)	125, 330, 987, 990, 993
FspBI	CTAG	5 cut(s)	182, 540, 783, 831, 1084
GluI	GCNGC	5 cut(s)	125, 330, 987, 990, 993
GsaI	CCCAGC	1 cut(s)	417
HapII	CCGG	2 cut(s)	106, 311
HgaI	GACGC	1 cut(s)	809
Hin1II	CATG	6 cut(s)	169, 209, 374, 392, 829, 908
HindIII	AAGCTT	2 cut(s)	609, 1070
HinfI	GANTC	4 cut(s)	130, 335, 381, 1010
HpaII	CCGG	2 cut(s)	106, 311
Hpy166II	GTNNAC	2 cut(s)	550, 929
Hpy188I	TCNGA	2 cut(s)	380, 459
Hpy188III	TCNNGA	3 cut(s)	134, 339, 701
Hpy8I	GTNNAC	2 cut(s)	550, 929
HpyAV	CCTTC	4 cut(s)	479, 641, 698, 950
HpyCH4IV	ACGT	2 cut(s)	144, 349
HpyCH4V	TGCA	5 cut(s)	127, 292, 332, 908, 995
HpyF10VI	GCNNNNNNNGC	3 cut(s)	800, 840, 992
HpyF3I	CTNAG	1 cut(s)	569
HpySE526I	ACGT	2 cut(s)	144, 349
Hsp92II	CATG	6 cut(s)	169, 209, 374, 392, 829, 908
KpnI	GGTACC	2 cut(s)	30, 235
Kzo9I	GATC	2 cut(s)	650, 697
LmnI	GCTCC	5 cut(s)	79, 284, 448, 641, 848
LpnPI	CCDG	8 cut(s)	20, 119, 225, 324, 399, 732, 753, 1053
Lsp1109I	GCAGC	5 cut(s)	111, 316, 973, 976, 979
LweI	GCATC	3 cut(s)	138, 343, 400
MaeI	CTAG	5 cut(s)	182, 540, 783, 831, 1084
MaeII	ACGT	2 cut(s)	144, 349
MaeIII	GTNAC	1 cut(s)	856
MalI	GATC	2 cut(s)	652, 699
MboI	GATC	2 cut(s)	650, 697
MboII	GAAGA	6 cut(s)	51, 256, 521, 525, 680, 750
MflI	RGATCY	1 cut(s)	650
MhlI	GDGCHC	1 cut(s)	1026
MlyI	GAGTC	1 cut(s)	390
MnlI	CCTC	6 cut(s)	108, 313, 424, 446, 917, 976
MseI	TTAA	5 cut(s)	470, 519, 576, 1049, 1077
MslI	CAYNNNNRTG	1 cut(s)	471
MspI	CCGG	2 cut(s)	106, 311
MspR9I	CCNGG	2 cut(s)	107, 312
Mva1269I	GAATGC	1 cut(s)	529
MwoI	GCNNNNNNNGC	3 cut(s)	800, 840, 992
NciI	CCSGG	2 cut(s)	107, 312
NcoI	CCATGG	1 cut(s)	388
NdeII	GATC	2 cut(s)	650, 697
NheI	GCTAGC	1 cut(s)	830
NlaIII	CATG	6 cut(s)	169, 209, 374, 392, 829, 908
NlaIV	GGNNCC	3 cut(s)	28, 233, 377
NmuCI	GTSAC	1 cut(s)	856
NspI	RCATGY	1 cut(s)	209
PaqCI	CACCTGC	1 cut(s)	748
PciI	ACATGT	1 cut(s)	205
PcsI	WCGNNNNNNNCGW	2 cut(s)	141, 346
PctI	GAATGC	1 cut(s)	529
PfeI	GAWTC	3 cut(s)	130, 335, 1010
PkrI	GCNGC	5 cut(s)	126, 331, 988, 991, 994
PleI	GAGTC	1 cut(s)	389
PpsI	GAGTC	1 cut(s)	389
Ppu21I	YACGTR	2 cut(s)	145, 350
PscI	ACATGT	1 cut(s)	205
Psp124BI	GAGCTC	1 cut(s)	1026
PspFI	CCCAGC	1 cut(s)	413
PspN4I	GGNNCC	3 cut(s)	28, 233, 377
PstI	CTGCAG	2 cut(s)	129, 334
PsuI	RGATCY	1 cut(s)	650
RsaI	GTAC	7 cut(s)	28, 140, 204, 233, 345, 751, 891
RsaNI	GTAC	7 cut(s)	27, 139, 203, 232, 344, 750, 890
RseI	CAYNNNNRTG	1 cut(s)	471
SacI	GAGCTC	1 cut(s)	1026
SaqAI	TTAA	5 cut(s)	470, 519, 576, 1049, 1077
SatI	GCNGC	5 cut(s)	125, 330, 987, 990, 993
Sau3AI	GATC	2 cut(s)	650, 697
ScaI	AGTACT	3 cut(s)	140, 345, 891
SchI	GAGTC	1 cut(s)	390
ScrFI	CCNGG	2 cut(s)	107, 312
SduI	GDGCHC	1 cut(s)	1026
SfaNI	GCATC	3 cut(s)	138, 343, 400
SfcI	CTRYAG	2 cut(s)	125, 330
SmiI	ATTTAAAT	1 cut(s)	471
SmiMI	CAYNNNNRTG	1 cut(s)	471
SmlI	CTYRAG	1 cut(s)	980
SmoI	CTYRAG	1 cut(s)	980
SsiI	CCGC	3 cut(s)	13, 218, 662
SspI	AATATT	1 cut(s)	727
SspMI	CTAG	5 cut(s)	182, 540, 783, 831, 1084
SstI	GAGCTC	1 cut(s)	1026
StyD4I	CCNGG	2 cut(s)	105, 310
StyI	CCWWGG	1 cut(s)	388
SwaI	ATTTAAAT	1 cut(s)	471
TaiI	ACGT	2 cut(s)	147, 352
TaqI	TCGA	1 cut(s)	778
TatI	WGTACW	4 cut(s)	138, 202, 343, 889
TfiI	GAWTC	3 cut(s)	130, 335, 1010
Tru1I	TTAA	5 cut(s)	470, 519, 576, 1049, 1077
Tru9I	TTAA	5 cut(s)	470, 519, 576, 1049, 1077
TseFI	GTSAC	1 cut(s)	856
TseI	GCWGC	5 cut(s)	124, 329, 986, 989, 992
Tsp45I	GTSAC	1 cut(s)	856
XapI	RAATTY	2 cut(s)	512, 689
XceI	RCATGY	1 cut(s)	209
XcmI	CCANNNNNNNNNTGG	1 cut(s)	868
XspI	CTAG	5 cut(s)	182, 540, 783, 831, 1084
ZrmI	AGTACT	3 cut(s)	140, 345, 891

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.