Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001154

Physical Location & Seq

Genomic Coordinates Reverse (-)

51186669 .. 51191933

Gene Structure 5265 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029912

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGCAGTGTGAGATCAAATCATTTGTGAAAGACATTATCGGAAGACCTGCAGAAGGTGAAAATATTGTTCCTACACCTGCTACTCGTACAACTTCCTCTGCTTCTAATTCAACTCGGACTAGAAAGCGACCAAGGGACGCTTATGCTCAATGCTTGGGAGACATGGCTAGCACACTTCGCTCCTTTGTGGATGTGACCAAGACACACTTGAAGACTATGAAAGAAGTACTTTTGAATGACCATGCAGCATCTACAAAAAGAGGTAAACTTGTCGAAGAGCTTATGAAAATTGAAGGTTTGAATGATTATGATGTGCTTGAGGCTGCTGCTATAATTATTGGCGATGACTCCAAAATTGAGCTCTTGTTTAGCTTACCTGACAATTTGAAGAGCCAATGGATTTACAAGCTTCTGAACCAATCTTGGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_3

Protein Analysis

144

Amino Acids

16.01

Weight (kDa)

7.75

Isoelectric Point (pI)

40.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001154)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g08194
prunus_persica	Prupe.4G257700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0343671 RchiOBHm_Chr5g0072391 RchiOBHm_Chr6g0274461 RchiOBHm_Chr6g0284621
rosa_laevigata	RLG00000001201 RLG00000008793 RLG00000013285 RLG00000013580 RLG00000015412 RLG00000020159 RLG00000022735 RLG00000029912 RLG00000030782 RLG00000032954
rosa_multiflora	Rmu_sc0000233.1_g000006 Rmu_sc0001240.1_g000006 Rmu_sc0002352.1_g000014 Rmu_sc0003882.1_g000036 Rmu_sc0004016.1_g000017 Rmu_sc0004698.1_g000002 Rmu_sc0006651.1_g000003 Rmu_sc0009984.1_g000002 Rmu_sc0010945.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083960 Rroxscaffold_2G00137540 Rroxscaffold_2G00137550 Rroxscaffold_3G00226540 Rroxscaffold_3G00276350 Rroxscaffold_7G00175350
rosa_rugosa	Rorug02G0052000 Rorug04G0314300 Rorug05G0057300 Rorug06G0033500
rosa_samantha	Rh1CG381500 Rh2DG003400 Rh3BG333400 Rh4AG123000 Rh4AG311600 Rh4AG339700 Rh4CG303900 Rh4CG334100 Rh5AG318400 Rh5BG324000 Rh6AG407700 Rh6BG340400 Rh7AG126300 Rh7CG042400 Rh7CG042500 Rh7CG154400 Rh7CG166300 Rh7CG315500
rosa_wichuraiana	Rw5G010820 Rw5G026590 Rw6G003280 Rw6G021230 Rw7G013220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	85
Acc36I	ACCTGC	2 cut(s)	55, 85
AfaI	GTAC	2 cut(s)	88, 228
AfiI	CCNNNNNNNGG	2 cut(s)	53, 424
AgsI	TTSAA	6 cut(s)	111, 211, 235, 293, 301, 388
AluBI	AGCT	4 cut(s)	280, 361, 372, 409
AluI	AGCT	4 cut(s)	280, 361, 372, 409
Alw21I	GWGCWC	1 cut(s)	363
Alw26I	GTCTC	1 cut(s)	153
ApeKI	GCWGC	3 cut(s)	245, 323, 326
AsuHPI	GGTGA	1 cut(s)	68
AsuNHI	GCTAGC	1 cut(s)	167
BanII	GRGCYC	1 cut(s)	363
BbsI	GAAGAC	2 cut(s)	49, 218
Bbv12I	GWGCWC	1 cut(s)	363
BbvI	GCAGC	3 cut(s)	257, 310, 313
BcoDI	GTCTC	1 cut(s)	153
BfaI	CTAG	2 cut(s)	120, 168
BfmI	CTRYAG	1 cut(s)	48
BfuAI	ACCTGC	2 cut(s)	55, 85
BisI	GCNGC	3 cut(s)	246, 324, 327
BlsI	GCNGC	3 cut(s)	247, 325, 328
BmcAI	AGTACT	1 cut(s)	228
BmsI	GCATC	1 cut(s)	257
BmtI	GCTAGC	1 cut(s)	171
BpiI	GAAGAC	2 cut(s)	49, 218
BpuEI	CTTGAG	1 cut(s)	338
BsaJI	CCNNGG	1 cut(s)	131
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 424
BseDI	CCNNGG	1 cut(s)	131
BseGI	GGATG	1 cut(s)	196
BseLI	CCNNNNNNNGG	2 cut(s)	53, 424
BseXI	GCAGC	3 cut(s)	257, 310, 313
BsiHKAI	GWGCWC	1 cut(s)	363
BslFI	GGGAC	1 cut(s)	149
BslI	CCNNNNNNNGG	2 cut(s)	53, 424
BsmAI	GTCTC	1 cut(s)	153
BsmFI	GGGAC	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	363
Bsp143I	GATC	1 cut(s)	12
BspMAI	CTGCAG	1 cut(s)	52
BspMI	ACCTGC	2 cut(s)	55, 85
BspOI	GCTAGC	1 cut(s)	171
BspQI	GCTCTTC	2 cut(s)	270, 383
BssECI	CCNNGG	1 cut(s)	131
BssMI	GATC	1 cut(s)	12
BssT1I	CCWWGG	1 cut(s)	131
Bst6I	CTCTTC	2 cut(s)	270, 383
BstC8I	GCNNGC	1 cut(s)	169
BstENI	CCTNNNNNAGG	1 cut(s)	51
BstF5I	GGATG	1 cut(s)	196
BstKTI	GATC	1 cut(s)	15
BstMAI	GTCTC	1 cut(s)	153
BstMBI	GATC	1 cut(s)	12
BstMWI	GCNNNNNNNGC	1 cut(s)	177
BstSFI	CTRYAG	1 cut(s)	48
BstV1I	GCAGC	3 cut(s)	257, 310, 313
BstV2I	GAAGAC	2 cut(s)	49, 218
BtgZI	GCGATG	1 cut(s)	357
BtsCI	GGATG	1 cut(s)	196
BtsI	GCAGTG	1 cut(s)	11
BtsIMutI	CAGTG	1 cut(s)	11
BveI	ACCTGC	2 cut(s)	55, 85
Cac8I	GCNNGC	1 cut(s)	169
CseI	GACGC	1 cut(s)	146
Csp6I	GTAC	2 cut(s)	87, 227
CviAII	CATG	2 cut(s)	163, 242
CviJI	RGCY	7 cut(s)	167, 280, 323, 361, 372, 393, 409
CviKI_1	RGCY	7 cut(s)	167, 280, 323, 361, 372, 393, 409
CviQI	GTAC	2 cut(s)	87, 227
DpnI	GATC	1 cut(s)	14
DpnII	GATC	1 cut(s)	12
Eam1104I	CTCTTC	2 cut(s)	270, 383
EarI	CTCTTC	2 cut(s)	270, 383
Ecl136II	GAGCTC	1 cut(s)	361
Eco130I	CCWWGG	1 cut(s)	131
Eco24I	GRGCYC	1 cut(s)	363
Eco53kI	GAGCTC	1 cut(s)	361
EcoICRI	GAGCTC	1 cut(s)	361
EcoNI	CCTNNNNNAGG	1 cut(s)	51
EcoT14I	CCWWGG	1 cut(s)	131
EcoT38I	GRGCYC	1 cut(s)	363
ErhI	CCWWGG	1 cut(s)	131
FaeI	CATG	2 cut(s)	166, 245
FaiI	YATR	8 cut(s)	144, 164, 218, 243, 284, 309, 332, 430
FalI	AAGNNNNNCTT	6 cut(s)	124, 156, 191, 223, 213, 245
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	2 cut(s)	162, 241
Fnu4HI	GCNGC	3 cut(s)	246, 324, 327
FokI	GGATG	1 cut(s)	203
FriOI	GRGCYC	1 cut(s)	363
Fsp4HI	GCNGC	3 cut(s)	246, 324, 327
FspBI	CTAG	2 cut(s)	120, 168
GluI	GCNGC	3 cut(s)	246, 324, 327
HgaI	GACGC	1 cut(s)	146
Hin1II	CATG	2 cut(s)	166, 245
HindIII	AAGCTT	1 cut(s)	407
HinfI	GANTC	1 cut(s)	347
HphI	GGTGA	1 cut(s)	68
Hpy166II	GTNNAC	1 cut(s)	266
Hpy188I	TCNGA	3 cut(s)	41, 117, 414
Hpy8I	GTNNAC	1 cut(s)	266
HpyAV	CCTTC	2 cut(s)	47, 287
HpyCH4V	TGCA	3 cut(s)	4, 50, 245
HpyF10VI	GCNNNNNNNGC	1 cut(s)	177
Hsp92II	CATG	2 cut(s)	166, 245
Kzo9I	GATC	1 cut(s)	12
LguI	GCTCTTC	2 cut(s)	270, 383
LmnI	GCTCC	1 cut(s)	185
LpnPI	CCDG	3 cut(s)	60, 90, 390
Lsp1109I	GCAGC	3 cut(s)	257, 310, 313
LweI	GCATC	1 cut(s)	257
MaeI	CTAG	2 cut(s)	120, 168
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	1 cut(s)	14
MboI	GATC	1 cut(s)	12
MboII	GAAGA	4 cut(s)	54, 223, 287, 400
MhlI	GDGCHC	1 cut(s)	363
MluCI	AATT	5 cut(s)	106, 288, 333, 354, 382
MlyI	GAGTC	1 cut(s)	341
MnlI	CCTC	3 cut(s)	106, 254, 313
MwoI	GCNNNNNNNGC	1 cut(s)	177
NdeII	GATC	1 cut(s)	12
NheI	GCTAGC	1 cut(s)	167
NlaIII	CATG	2 cut(s)	166, 245
NmuCI	GTSAC	1 cut(s)	193
PaqCI	CACCTGC	1 cut(s)	85
PciSI	GCTCTTC	2 cut(s)	270, 383
PkrI	GCNGC	3 cut(s)	247, 325, 328
PleI	GAGTC	1 cut(s)	341
PpsI	GAGTC	1 cut(s)	341
Psp124BI	GAGCTC	1 cut(s)	363
PstI	CTGCAG	1 cut(s)	52
RsaI	GTAC	2 cut(s)	88, 228
RsaNI	GTAC	2 cut(s)	87, 227
SacI	GAGCTC	1 cut(s)	363
SapI	GCTCTTC	2 cut(s)	270, 383
SatI	GCNGC	3 cut(s)	246, 324, 327
Sau3AI	GATC	1 cut(s)	12
ScaI	AGTACT	1 cut(s)	228
SchI	GAGTC	1 cut(s)	341
SduI	GDGCHC	1 cut(s)	363
SfaNI	GCATC	1 cut(s)	257
SfcI	CTRYAG	1 cut(s)	48
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
Sse9I	AATT	5 cut(s)	106, 288, 333, 354, 382
SspI	AATATT	1 cut(s)	64
SspMI	CTAG	2 cut(s)	120, 168
SstI	GAGCTC	1 cut(s)	363
StyI	CCWWGG	1 cut(s)	131
TaqI	TCGA	1 cut(s)	273
TasI	AATT	5 cut(s)	106, 288, 333, 354, 382
TatI	WGTACW	1 cut(s)	226
TseFI	GTSAC	1 cut(s)	193
TseI	GCWGC	3 cut(s)	245, 323, 326
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	2 cut(s)	233, 299
XagI	CCTNNNNNAGG	1 cut(s)	51
XspI	CTAG	2 cut(s)	120, 168
ZrmI	AGTACT	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.