Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001154

Physical Location & Seq

Genomic Coordinates Forward (+)

26591941 .. 26595939

Gene Structure 3999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG123000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGAAGATTCCAAAAGGAGGCCAATTGGATCCCATTGCGCCTCTTGAGCTACCCCATTCTTTGCATGCCTTTGGCCGTGTCTCTGACACAAATGAGCTGAACATGGTTCACAAGGAAGCCAAAGGACTAAGACTTAAACCATTCATTCATTATGATACTTTGGTGGAAGCTTTTGGGAGAGATAGAGCCAATGGGTTAGGAGCTGAAGGACCTGCAGAAGCTGATGAAGATGTGAATAATGATAATGAATTTGTTGATCTTGAAGGACCTGTAGAAGCTGAAAATATTGTTCCTACAACTGCTACTCGTACAACTTCCTCTGCTTCTAATTCAACTCGGACTAGAAAGCGAGCAAGGGACGCTTATGCTCAATGCTTGGGAGACATGGCTAGCACACTTCGCTCCTTTGTGGATGTGACCAAGACACACTTGGAGACTATGAAAGAAGTACTTTTGAATGACCATGCAACATCTACAAAAAGAGGTAAACTTGTCGAAGAGCTTATGAAAATTGAAGGTTTGAATGATTATGATGTGCTTGAGGCTGCTGCTTTAATTATTGGCAATGACTCCAAAATTGAGCTCTTGTTTAGCTTACCTGACAATTTGAAGAGCCAATGGATTTACAAGCTTCTGAACCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

214

Amino Acids

23.67

Weight (kDa)

5.19

Isoelectric Point (pI)

31.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001154)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g08194
prunus_persica	Prupe.4G257700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0343671 RchiOBHm_Chr5g0072391 RchiOBHm_Chr6g0274461 RchiOBHm_Chr6g0284621
rosa_laevigata	RLG00000001201 RLG00000008793 RLG00000013285 RLG00000013580 RLG00000015412 RLG00000020159 RLG00000022735 RLG00000029912 RLG00000030782 RLG00000032954
rosa_multiflora	Rmu_sc0000233.1_g000006 Rmu_sc0001240.1_g000006 Rmu_sc0002352.1_g000014 Rmu_sc0003882.1_g000036 Rmu_sc0004016.1_g000017 Rmu_sc0004698.1_g000002 Rmu_sc0006651.1_g000003 Rmu_sc0009984.1_g000002 Rmu_sc0010945.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083960 Rroxscaffold_2G00137540 Rroxscaffold_2G00137550 Rroxscaffold_3G00226540 Rroxscaffold_3G00276350 Rroxscaffold_7G00175350
rosa_rugosa	Rorug02G0052000 Rorug04G0314300 Rorug05G0057300 Rorug06G0033500
rosa_samantha	Rh1CG381500 Rh2DG003400 Rh3BG333400 Rh4AG123000 Rh4AG311600 Rh4AG339700 Rh4CG303900 Rh4CG334100 Rh5AG318400 Rh5BG324000 Rh6AG407700 Rh6BG340400 Rh7AG126300 Rh7CG042400 Rh7CG042500 Rh7CG154400 Rh7CG166300 Rh7CG315500
rosa_wichuraiana	Rw5G010820 Rw5G026590 Rw6G003280 Rw6G021230 Rw7G013220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	220
AclWI	GGATC	2 cut(s)	23, 36
AcoI	YGGCCR	1 cut(s)	73
AcsI	RAATTY	1 cut(s)	248
AcuI	CTGAAG	1 cut(s)	225
AfaI	GTAC	2 cut(s)	310, 450
AfiI	CCNNNNNNNGG	1 cut(s)	17
AgsI	TTSAA	6 cut(s)	263, 333, 457, 515, 523, 610
Alw21I	GWGCWC	1 cut(s)	585
Alw26I	GTCTC	3 cut(s)	85, 375, 428
AlwI	GGATC	2 cut(s)	23, 36
AlwNI	CAGNNNCTG	1 cut(s)	221
AoxI	GGCC	2 cut(s)	19, 73
ApeKI	GCWGC	2 cut(s)	545, 548
ApoI	RAATTY	1 cut(s)	248
AspLEI	GCGC	1 cut(s)	40
AspS9I	GGNCC	2 cut(s)	209, 266
AsuNHI	GCTAGC	1 cut(s)	389
AvaII	GGWCC	2 cut(s)	209, 266
BaeI	ACNNNNGTAYC	2 cut(s)	147, 180
BamHI	GGATCC	1 cut(s)	28
BanII	GRGCYC	1 cut(s)	585
Bbv12I	GWGCWC	1 cut(s)	585
BbvI	GCAGC	2 cut(s)	532, 535
BceAI	ACGGC	1 cut(s)	60
BcoDI	GTCTC	3 cut(s)	85, 375, 428
BfaI	CTAG	2 cut(s)	342, 390
BfmI	CTRYAG	2 cut(s)	213, 270
BfuAI	ACCTGC	1 cut(s)	220
BisI	GCNGC	2 cut(s)	546, 549
BlsI	GCNGC	2 cut(s)	547, 550
BmcAI	AGTACT	1 cut(s)	450
Bme18I	GGWCC	2 cut(s)	209, 266
BmgT120I	GGNCC	2 cut(s)	209, 266
BmiI	GGNNCC	1 cut(s)	30
BmtI	GCTAGC	1 cut(s)	393
BpuEI	CTTGAG	2 cut(s)	65, 560
Bsc4I	CCNNNNNNNGG	1 cut(s)	17
Bse1I	ACTGG	1 cut(s)	640
Bse3DI	GCAATG	2 cut(s)	33, 571
BseGI	GGATG	1 cut(s)	418
BseLI	CCNNNNNNNGG	1 cut(s)	17
BseMI	GCAATG	2 cut(s)	33, 571
BseNI	ACTGG	1 cut(s)	640
BseXI	GCAGC	2 cut(s)	532, 535
BshFI	GGCC	2 cut(s)	21, 75
BsiHKAI	GWGCWC	1 cut(s)	585
BslFI	GGGAC	1 cut(s)	371
BslI	CCNNNNNNNGG	1 cut(s)	17
BsmAI	GTCTC	3 cut(s)	85, 375, 428
BsmFI	GGGAC	1 cut(s)	371
BsnI	GGCC	2 cut(s)	21, 75
Bsp1286I	GDGCHC	1 cut(s)	585
Bsp143I	GATC	2 cut(s)	28, 256
BspANI	GGCC	2 cut(s)	21, 75
BspLI	GGNNCC	1 cut(s)	30
BspMAI	CTGCAG	1 cut(s)	217
BspMI	ACCTGC	1 cut(s)	220
BspOI	GCTAGC	1 cut(s)	393
BspPI	GGATC	2 cut(s)	23, 36
BspQI	GCTCTTC	2 cut(s)	492, 605
BsrDI	GCAATG	2 cut(s)	33, 571
BsrI	ACTGG	1 cut(s)	640
BssMI	GATC	2 cut(s)	28, 256
Bst6I	CTCTTC	2 cut(s)	492, 605
BstC8I	GCNNGC	3 cut(s)	66, 351, 391
BstDEI	CTNAG	1 cut(s)	128
BstF5I	GGATG	1 cut(s)	418
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	2 cut(s)	31, 259
BstMAI	GTCTC	3 cut(s)	85, 375, 428
BstMBI	GATC	2 cut(s)	28, 256
BstMWI	GCNNNNNNNGC	3 cut(s)	46, 359, 399
BstNSI	RCATGY	1 cut(s)	68
BstSFI	CTRYAG	2 cut(s)	213, 270
BstV1I	GCAGC	2 cut(s)	532, 535
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
BsuRI	GGCC	2 cut(s)	21, 75
BtsCI	GGATG	1 cut(s)	418
BveI	ACCTGC	1 cut(s)	220
Cac8I	GCNNGC	3 cut(s)	66, 351, 391
CaiI	CAGNNNCTG	1 cut(s)	221
CfoI	GCGC	1 cut(s)	40
Cfr13I	GGNCC	2 cut(s)	209, 266
CseI	GACGC	1 cut(s)	368
Csp6I	GTAC	2 cut(s)	309, 449
CviAII	CATG	4 cut(s)	65, 103, 385, 464
CviQI	GTAC	2 cut(s)	309, 449
DdeI	CTNAG	1 cut(s)	128
DpnI	GATC	2 cut(s)	30, 258
DpnII	GATC	2 cut(s)	28, 256
EaeI	YGGCCR	1 cut(s)	73
Eam1104I	CTCTTC	2 cut(s)	492, 605
EarI	CTCTTC	2 cut(s)	492, 605
Ecl136II	GAGCTC	1 cut(s)	583
Eco24I	GRGCYC	1 cut(s)	585
Eco47I	GGWCC	2 cut(s)	209, 266
Eco53kI	GAGCTC	1 cut(s)	583
Eco57I	CTGAAG	1 cut(s)	225
EcoICRI	GAGCTC	1 cut(s)	583
EcoO109I	RGGNCCY	2 cut(s)	209, 266
EcoT38I	GRGCYC	1 cut(s)	585
FaeI	CATG	4 cut(s)	68, 106, 388, 467
FaiI	YATR	9 cut(s)	66, 104, 153, 366, 386, 440, 465, 506, 531
FalI	AAGNNNNNCTT	6 cut(s)	346, 378, 413, 445, 435, 467
FaqI	GGGAC	1 cut(s)	371
FatI	CATG	4 cut(s)	64, 102, 384, 463
Fnu4HI	GCNGC	2 cut(s)	546, 549
FokI	GGATG	1 cut(s)	425
FriOI	GRGCYC	1 cut(s)	585
Fsp4HI	GCNGC	2 cut(s)	546, 549
FspBI	CTAG	2 cut(s)	342, 390
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	2 cut(s)	546, 549
HaeIII	GGCC	2 cut(s)	21, 75
HgaI	GACGC	1 cut(s)	368
HhaI	GCGC	1 cut(s)	40
Hin1II	CATG	4 cut(s)	68, 106, 388, 467
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HindIII	AAGCTT	2 cut(s)	168, 629
HinfI	GANTC	2 cut(s)	7, 569
Hpy166II	GTNNAC	2 cut(s)	109, 488
Hpy188I	TCNGA	3 cut(s)	85, 339, 636
Hpy188III	TCNNGA	2 cut(s)	44, 260
Hpy8I	GTNNAC	2 cut(s)	109, 488
HpyAV	CCTTC	3 cut(s)	200, 257, 509
HpyCH4V	TGCA	3 cut(s)	64, 215, 467
HpyF10VI	GCNNNNNNNGC	3 cut(s)	46, 359, 399
HpyF3I	CTNAG	1 cut(s)	128
Hsp92II	CATG	4 cut(s)	68, 106, 388, 467
HspAI	GCGC	1 cut(s)	38
Kzo9I	GATC	2 cut(s)	28, 256
LguI	GCTCTTC	2 cut(s)	492, 605
LmnI	GCTCC	2 cut(s)	200, 407
LpnPI	CCDG	3 cut(s)	225, 282, 612
Lsp1109I	GCAGC	2 cut(s)	532, 535
MaeI	CTAG	2 cut(s)	342, 390
MaeIII	GTNAC	1 cut(s)	415
MalI	GATC	2 cut(s)	30, 258
MboI	GATC	2 cut(s)	28, 256
MboII	GAAGA	4 cut(s)	16, 239, 509, 622
MfeI	CAATTG	1 cut(s)	23
MflI	RGATCY	1 cut(s)	28
MhlI	GDGCHC	1 cut(s)	585
MluCI	AATT	7 cut(s)	23, 248, 328, 510, 555, 576, 604
MlyI	GAGTC	1 cut(s)	563
MnlI	CCTC	5 cut(s)	11, 51, 328, 476, 535
MseI	TTAA	2 cut(s)	135, 554
MunI	CAATTG	1 cut(s)	23
MwoI	GCNNNNNNNGC	3 cut(s)	46, 359, 399
NdeII	GATC	2 cut(s)	28, 256
NheI	GCTAGC	1 cut(s)	389
NlaIII	CATG	4 cut(s)	68, 106, 388, 467
NlaIV	GGNNCC	1 cut(s)	30
NmuCI	GTSAC	1 cut(s)	415
NspI	RCATGY	1 cut(s)	68
PaeI	GCATGC	1 cut(s)	68
PciSI	GCTCTTC	2 cut(s)	492, 605
PfeI	GAWTC	1 cut(s)	7
PkrI	GCNGC	2 cut(s)	547, 550
PleI	GAGTC	1 cut(s)	563
PpsI	GAGTC	1 cut(s)	563
PpuMI	RGGWCCY	2 cut(s)	209, 266
Psp124BI	GAGCTC	1 cut(s)	585
Psp5II	RGGWCCY	2 cut(s)	209, 266
PspN4I	GGNNCC	1 cut(s)	30
PspPI	GGNCC	2 cut(s)	209, 266
PspPPI	RGGWCCY	2 cut(s)	209, 266
PstI	CTGCAG	1 cut(s)	217
PstNI	CAGNNNCTG	1 cut(s)	221
PsuI	RGATCY	1 cut(s)	28
RsaI	GTAC	2 cut(s)	310, 450
RsaNI	GTAC	2 cut(s)	309, 449
SacI	GAGCTC	1 cut(s)	585
SapI	GCTCTTC	2 cut(s)	492, 605
SaqAI	TTAA	2 cut(s)	135, 554
SatI	GCNGC	2 cut(s)	546, 549
Sau3AI	GATC	2 cut(s)	28, 256
Sau96I	GGNCC	2 cut(s)	209, 266
ScaI	AGTACT	1 cut(s)	450
SchI	GAGTC	1 cut(s)	563
SduI	GDGCHC	1 cut(s)	585
SfcI	CTRYAG	2 cut(s)	213, 270
SinI	GGWCC	2 cut(s)	209, 266
SmlI	CTYRAG	2 cut(s)	44, 539
SmoI	CTYRAG	2 cut(s)	44, 539
SphI	GCATGC	1 cut(s)	68
Sse9I	AATT	7 cut(s)	23, 248, 328, 510, 555, 576, 604
SspI	AATATT	1 cut(s)	286
SspMI	CTAG	2 cut(s)	342, 390
SstI	GAGCTC	1 cut(s)	585
TaqI	TCGA	1 cut(s)	495
TasI	AATT	7 cut(s)	23, 248, 328, 510, 555, 576, 604
TatI	WGTACW	1 cut(s)	448
TfiI	GAWTC	1 cut(s)	7
Tru1I	TTAA	2 cut(s)	135, 554
Tru9I	TTAA	2 cut(s)	135, 554
TseFI	GTSAC	1 cut(s)	415
TseI	GCWGC	2 cut(s)	545, 548
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	7 cut(s)	17, 133, 137, 240, 261, 455, 521
VpaK11BI	GGWCC	2 cut(s)	209, 266
XapI	RAATTY	1 cut(s)	248
XceI	RCATGY	1 cut(s)	68
XcmI	CCANNNNNNNNNTGG	1 cut(s)	427
XspI	CTAG	2 cut(s)	342, 390
ZrmI	AGTACT	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.