Rh7CG315500
MYB Family

nuclease HARBI1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001154
Physical Location & Seq
Reverse (-)
33670678 .. 33672070
1393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG315500.1

Sequence Viewer

Length: 294 bp
ATGCATGGGCCTCAATGTAAAAGAGTTGAGTTTTTAAGTGCCTTACTTGCTGTTCATAAGGATGCAAAAGGACTGAGAATGAAACCATTCATTCATTACGACAGCTTGATTGAAGCCTTTGGCAGAGATCGTGCAAATGGATTAGGAGCTGAAGGACCAGCTGAAGCAGATGAAGATCTAAACAATGAGAATAATTATGCTGACATTGAAGAAAATGCTGTGGATGAAATCACAGTTCCTTCACCTATTACCTGCACTCCTGCACAGTGCACACCCACCTTCAGCTCAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

97

Amino Acids

10.58

Weight (kDa)

4.63

Isoelectric Point (pI)

68.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 260
AcuI CTGAAG 3 cut(s) 171, 183, 265
AgsI TTSAA 2 cut(s) 113, 209
AluBI AGCT 4 cut(s) 105, 149, 161, 285
AluI AGCT 4 cut(s) 105, 149, 161, 285
Alw21I GWGCWC 1 cut(s) 272
Alw44I GTGCAC 1 cut(s) 268
AoxI GGCC 1 cut(s) 8
ApaLI GTGCAC 1 cut(s) 268
Asp700I GAANNNNTTC 1 cut(s) 86
AspS9I GGNCC 2 cut(s) 8, 155
AsuHPI GGTGA 1 cut(s) 234
AvaII GGWCC 1 cut(s) 155
BaeGI GKGCMC 1 cut(s) 272
Bbv12I GWGCWC 1 cut(s) 272
BfaI CTAG 1 cut(s) 292
BfuAI ACCTGC 1 cut(s) 260
BglII AGATCT 1 cut(s) 175
Bme18I GGWCC 1 cut(s) 155
BmgT120I GGNCC 2 cut(s) 8, 155
BmsI GCATC 1 cut(s) 52
BsaBI GATNNNNATC 1 cut(s) 174
BsaXI ACNNNNNCTCC 2 cut(s) 241, 271
Bse8I GATNNNNATC 1 cut(s) 174
BseGI GGATG 2 cut(s) 67, 229
BseJI GATNNNNATC 1 cut(s) 174
BseMII CTCAG 1 cut(s) 65
BseSI GKGCMC 1 cut(s) 272
BsgI GTGCAG 2 cut(s) 238, 246
BshFI GGCC 1 cut(s) 10
BsiHKAI GWGCWC 1 cut(s) 272
BsnI GGCC 1 cut(s) 10
Bsp1286I GDGCHC 1 cut(s) 272
Bsp143I GATC 2 cut(s) 127, 175
BspANI GGCC 1 cut(s) 10
BspCNI CTCAG 1 cut(s) 66
BspMI ACCTGC 1 cut(s) 260
BssMI GATC 2 cut(s) 127, 175
Bst4CI ACNGT 2 cut(s) 235, 267
BstDEI CTNAG 1 cut(s) 74
BstF5I GGATG 2 cut(s) 67, 229
BstKTI GATC 2 cut(s) 130, 178
BstMBI GATC 2 cut(s) 127, 175
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstSLI GKGCMC 1 cut(s) 272
BstX2I RGATCY 1 cut(s) 175
BstYI RGATCY 1 cut(s) 175
BsuRI GGCC 1 cut(s) 10
BtsCI GGATG 2 cut(s) 67, 229
BtsIMutI CAGTG 1 cut(s) 272
BveI ACCTGC 1 cut(s) 260
Cfr13I GGNCC 2 cut(s) 8, 155
CviAII CATG 1 cut(s) 5
CviJI RGCY 6 cut(s) 10, 105, 116, 149, 161, 285
CviKI_1 RGCY 6 cut(s) 10, 105, 116, 149, 161, 285
DdeI CTNAG 1 cut(s) 74
DpnI GATC 2 cut(s) 129, 177
DpnII GATC 2 cut(s) 127, 175
Eco47I GGWCC 1 cut(s) 155
Eco57I CTGAAG 3 cut(s) 171, 183, 265
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 8
FaiI YATR 3 cut(s) 6, 57, 198
FatI CATG 1 cut(s) 4
FokI GGATG 2 cut(s) 74, 236
FspBI CTAG 1 cut(s) 292
HaeIII GGCC 1 cut(s) 10
Hin1II CATG 1 cut(s) 8
HphI GGTGA 1 cut(s) 234
Hpy166II GTNNAC 1 cut(s) 270
Hpy8I GTNNAC 1 cut(s) 270
HpyAV CCTTC 3 cut(s) 146, 249, 289
HpyCH4III ACNGT 2 cut(s) 235, 267
HpyCH4V TGCA 6 cut(s) 4, 65, 134, 255, 263, 270
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
HpyF3I CTNAG 1 cut(s) 74
Hsp92II CATG 1 cut(s) 8
Kzo9I GATC 2 cut(s) 127, 175
LmnI GCTCC 1 cut(s) 146
LpnPI CCDG 3 cut(s) 171, 265, 273
LweI GCATC 1 cut(s) 52
MaeI CTAG 1 cut(s) 292
MalI GATC 2 cut(s) 129, 177
MboI GATC 2 cut(s) 127, 175
MboII GAAGA 2 cut(s) 185, 221
MflI RGATCY 1 cut(s) 175
MhlI GDGCHC 1 cut(s) 272
MluCI AATT 1 cut(s) 193
MnlI CCTC 1 cut(s) 21
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 86
MseI TTAA 1 cut(s) 35
MslI CAYNNNNRTG 1 cut(s) 60
MspA1I CMGCKG 1 cut(s) 161
MwoI GCNNNNNNNGC 1 cut(s) 47
NdeII GATC 2 cut(s) 127, 175
NlaIII CATG 1 cut(s) 8
NsiI ATGCAT 1 cut(s) 6
PdmI GAANNNNTTC 1 cut(s) 86
PspPI GGNCC 2 cut(s) 8, 155
PsuI RGATCY 1 cut(s) 175
PvuII CAGCTG 1 cut(s) 161
RseI CAYNNNNRTG 1 cut(s) 60
SaqAI TTAA 1 cut(s) 35
Sau3AI GATC 2 cut(s) 127, 175
Sau96I GGNCC 2 cut(s) 8, 155
SduI GDGCHC 1 cut(s) 272
SetI ASST 7 cut(s) 107, 151, 163, 247, 254, 281, 287
SfaNI GCATC 1 cut(s) 52
SgeI CNNG 7 cut(s) 17, 59, 118, 143, 170, 264, 272
SinI GGWCC 1 cut(s) 155
SmiMI CAYNNNNRTG 1 cut(s) 60
Sse9I AATT 1 cut(s) 193
SspMI CTAG 1 cut(s) 292
TaaI ACNGT 2 cut(s) 235, 267
TasI AATT 1 cut(s) 193
Tru1I TTAA 1 cut(s) 35
Tru9I TTAA 1 cut(s) 35
TscAI CASTG 1 cut(s) 272
TspDTI ATGAA 6 cut(s) 44, 79, 83, 95, 186, 240
TspRI CASTG 1 cut(s) 272
VneI GTGCAC 1 cut(s) 268
VpaK11BI GGWCC 1 cut(s) 155
XmnI GAANNNNTTC 1 cut(s) 86
XspI CTAG 1 cut(s) 292
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.