FvH4_6g26451

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000916
Physical Location & Seq
Reverse (-)
20235124 .. 20240287
5164 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g26451.t1

Sequence Viewer

Length: 1590 bp
ATGATAGAAACCACTGGTCAATTGAAGTTCTTTGGCTTGGATATGGGCTCCCTGCAATGGAATCTGCTATGGATGGATCCAATCGAAGGATGTGATGTTTATGCTTCCTGTGGTGCTTTTAGCATATGCAACCCACCTATTCCTCAGTGTGGCTGCCTAAAAGGATTTGAACCCACATTACCGAACCACTGGGAATTAAAAGATTACTCAAATGGCTGTGGGAGGAAAACTTCTTTTCATTGCGGTGAGGAAGGAAATTCTGCATTCCTGGTGATGGAGAATGTTACTTACCCGAACAGTCCCGACTCCTTGGTAGTTGAGAACATTGACAAATGTAGATTAGCTTGCTTGAGAAATTGCTCATGCACTGCTTTTGCTTATGATAATCAGTGTCTGGTTTGGAAGGGTGATCTGTTTAATGTAAAACAACCATCATCTGATGGAATGTTGGGAAAAGTGTGGTATCTACGAGTAGCATCATCAGAGAAGAATCAAATAATAGATTCTAAAGATGGGAACAGAAAGAGAAAGACTACTTGGATTGTGGTTGGAGTACTTGCAGGCATCTTTTCTCTCTTAAGCATTGTGCTGGTCTTTGTCCGACGGAGACAGTCTGTTGGAGCATTGGAGTCTCTTGAGGATCCTCTAGTGCTGTTCAACTACAGACATTTGATGAAAGCAACAGAAAACTTCTCAGAGAAACTTGGAGAAGGAGCTTTCGGTTCTGTTTTCAAGGGGATATTGCCTGATTCAACTCCCATAGCAGTGAAACAACTAAAGAGTCTGTTGCAGGGTGAAAAGCAATTTCAGGCTGAAGTGAGAACTCTTGGTGCAATCCAGCACATTACTGTTCTTCGCCTCCGTGGGTTTTGTGCAGATTCTACAAGAAGACTCTTGGTATATGACTATGTGCCAAATGGCTCTCTACAATCTGTTCTAGTTCCAAAACATCCACTAATCTTGGATTGGAAAAAAAGATATCATATTGCCATAGGCATTGCAAGAGGATTGGCTTATCTCCATGAGGACTGTAGAGATTGTATAATACACTGCGACGTTAAGCCAGAGAACATTTTGTTGGATGCAGAATATAGTCCAAAAGTCGCAGATTTTGGTCTTGCAAAACTCATTGGGAGACACCATAGTCGAGTTCTGACAACTGTGCGAGGAACTGTTGGATATCTAGCACCAGAATGGTTTACAGGTGAAGCCATCACTCCAAAAGCCGATGTCTTCAGCTATGGGAAGTTGCTCTTTGAGGTTATATCTGGAAGGAGAAACACTGAAGGGTTAGATGATGGATTAGAGAACTACACCCCTAACCGGGTTGCAAATGTAGTAACTAGAGGGCAAGATGTTCTTACCTTGGTTGATTACAGGTTGGCAGGTAATGCTGACAAAGATGAACTCATTAGAGCATGCAAAGTCGCGTGTTGGTGTATTCAAGACGAAGAGATGGATAGGCCAACAATGAGGCAGGTCGTTCAAATTCTGGAAGGAGCTTTAGATGTTGGTATACCCCCGATCCCACTGTTTCTCCAGCGCCTTTCCGGAAGTCCAAAGGAAGTAATCAATTACTCGGAACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase S_locus_glycop

Protein Analysis

530

Amino Acids

59.06

Weight (kDa)

6.57

Isoelectric Point (pI)

41.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 1 - 59 1.1e-12 S-locus glycoprotein domain
PAN_2 PF08276 81 - 141 5.9e-14 PAN-like domain
PK_Tyr_Ser-Thr PF07714 231 - 498 1.8e-40 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 232 - 496 2.7e-45 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1143
Acc36I ACCTGC 2 cut(s) 1376, 1468
AccI GTMKAC 1 cut(s) 1516
AccII CGCG 1 cut(s) 1430
AccIII TCCGGA 1 cut(s) 1550
AciI CCGC 1 cut(s) 243
AclWI GGATC 5 cut(s) 71, 84, 635, 648, 1519
AcsI RAATTY 2 cut(s) 256, 1488
AcuI CTGAAG 3 cut(s) 834, 1219, 1305
AfaI GTAC 1 cut(s) 555
AfiI CCNNNNNNNGG 6 cut(s) 57, 86, 149, 274, 1323, 1324
AflII CTTAAG 1 cut(s) 577
AgsI TTSAA 7 cut(s) 25, 170, 658, 733, 753, 1445, 1487
AjnI CCWGG 1 cut(s) 267
AjuI GAANNNNNNNTTGG 4 cut(s) 520, 552, 1061, 1093
AluBI AGCT 4 cut(s) 344, 716, 1239, 1502
AluI AGCT 4 cut(s) 344, 716, 1239, 1502
Alw26I GTCTC 3 cut(s) 601, 636, 1129
AlwI GGATC 5 cut(s) 71, 84, 635, 648, 1519
AlwNI CAGNNNCTG 1 cut(s) 394
Aor13HI TCCGGA 1 cut(s) 1550
AoxI GGCC 1 cut(s) 1463
ApeKI GCWGC 1 cut(s) 153
ApoI RAATTY 2 cut(s) 256, 1488
AspLEI GCGC 1 cut(s) 1545
AsuC2I CCSGG 1 cut(s) 1325
AsuHPI GGTGA 5 cut(s) 257, 283, 419, 806, 1217
BamHI GGATCC 2 cut(s) 76, 640
BanII GRGCYC 1 cut(s) 50
BbsI GAAGAC 2 cut(s) 895, 1225
BbvI GCAGC 1 cut(s) 140
BccI CCATC 8 cut(s) 67, 268, 434, 439, 506, 1220, 1292, 1450
BciT130I CCWGG 1 cut(s) 269
BcnI CCSGG 1 cut(s) 1325
BcoDI GTCTC 3 cut(s) 601, 636, 1129
BfaI CTAG 4 cut(s) 647, 938, 1184, 1344
BfmI CTRYAG 2 cut(s) 661, 1030
BfoI RGCGCY 1 cut(s) 1546
BfrI CTTAAG 1 cut(s) 577
BfuAI ACCTGC 2 cut(s) 1376, 1468
BisI GCNGC 1 cut(s) 154
BlsI GCNGC 1 cut(s) 155
BmcAI AGTACT 1 cut(s) 555
Bme1390I CCNGG 2 cut(s) 269, 1325
BmiI GGNNCC 4 cut(s) 49, 78, 642, 1584
BmrFI CCNGG 2 cut(s) 269, 1325
BmrI ACTGGG 1 cut(s) 199
BmsI GCATC 3 cut(s) 485, 573, 1072
BmuI ACTGGG 1 cut(s) 199
BpiI GAAGAC 2 cut(s) 895, 1225
BpmI CTGGAG 1 cut(s) 1523
BpuEI CTTGAG 2 cut(s) 370, 656
BpuMI CCSGG 1 cut(s) 1325
BsaJI CCNNGG 3 cut(s) 309, 862, 1365
BsaWI WCCGGW 1 cut(s) 1550
BsaXI ACNNNNNCTCC 2 cut(s) 1521, 1551
Bsc4I CCNNNNNNNGG 6 cut(s) 57, 86, 149, 274, 1323, 1324
Bse1I ACTGG 2 cut(s) 19, 194
Bse3DI GCAATG 3 cut(s) 62, 238, 996
BseAI TCCGGA 1 cut(s) 1550
BseBI CCWGG 1 cut(s) 269
BseDI CCNNGG 3 cut(s) 309, 862, 1365
BseGI GGATG 4 cut(s) 78, 95, 949, 1087
BseLI CCNNNNNNNGG 6 cut(s) 57, 86, 149, 274, 1323, 1324
BseMI GCAATG 3 cut(s) 62, 238, 996
BseMII CTCAG 2 cut(s) 158, 708
BseNI ACTGG 2 cut(s) 19, 194
BseXI GCAGC 1 cut(s) 140
BsgI GTGCAG 1 cut(s) 894
Bsh1236I CGCG 1 cut(s) 1430
BshFI GGCC 1 cut(s) 1465
BsiSI CCGG 2 cut(s) 1324, 1551
BslFI GGGAC 1 cut(s) 285
BslI CCNNNNNNNGG 6 cut(s) 57, 86, 149, 274, 1323, 1324
BsmAI GTCTC 3 cut(s) 601, 636, 1129
BsmFI GGGAC 1 cut(s) 285
BsmI GAATGC 1 cut(s) 263
BsnI GGCC 1 cut(s) 1465
Bsp1286I GDGCHC 1 cut(s) 50
Bsp13I TCCGGA 1 cut(s) 1550
Bsp143I GATC 4 cut(s) 76, 409, 640, 1524
BspACI CCGC 1 cut(s) 243
BspANI GGCC 1 cut(s) 1465
BspCNI CTCAG 2 cut(s) 157, 707
BspEI TCCGGA 1 cut(s) 1550
BspFNI CGCG 1 cut(s) 1430
BspLI GGNNCC 4 cut(s) 49, 78, 642, 1584
BspMI ACCTGC 2 cut(s) 1376, 1468
BspPI GGATC 5 cut(s) 71, 84, 635, 648, 1519
BspTI CTTAAG 1 cut(s) 577
BsrDI GCAATG 3 cut(s) 62, 238, 996
BsrI ACTGG 2 cut(s) 19, 194
BssECI CCNNGG 3 cut(s) 309, 862, 1365
BssMI GATC 4 cut(s) 76, 409, 640, 1524
BssNAI GTATAC 1 cut(s) 1517
BssT1I CCWWGG 2 cut(s) 309, 1365
Bst1107I GTATAC 1 cut(s) 1517
Bst2UI CCWGG 1 cut(s) 269
Bst4CI ACNGT 7 cut(s) 299, 612, 850, 1031, 1162, 1174, 1533
Bst6I CTCTTC 1 cut(s) 1446
BstAFI CTTAAG 1 cut(s) 577
BstAPI GCANNNNNTGC 1 cut(s) 1391
BstC8I GCNNGC 3 cut(s) 346, 562, 1420
BstDEI CTNAG 3 cut(s) 144, 694, 1587
BstDSI CCRYGG 1 cut(s) 862
BstF5I GGATG 4 cut(s) 78, 95, 949, 1087
BstFNI CGCG 1 cut(s) 1430
BstH2I RGCGCY 1 cut(s) 1546
BstHHI GCGC 1 cut(s) 1545
BstKTI GATC 4 cut(s) 79, 412, 643, 1527
BstMAI GTCTC 3 cut(s) 601, 636, 1129
BstMBI GATC 4 cut(s) 76, 409, 640, 1524
BstMWI GCNNNNNNNGC 1 cut(s) 1391
BstNI CCWGG 1 cut(s) 269
BstNSI RCATGY 1 cut(s) 1422
BstSCI CCNGG 2 cut(s) 267, 1323
BstSFI CTRYAG 2 cut(s) 661, 1030
BstUI CGCG 1 cut(s) 1430
BstV1I GCAGC 1 cut(s) 140
BstV2I GAAGAC 2 cut(s) 895, 1225
BstX2I RGATCY 2 cut(s) 76, 640
BstYI RGATCY 2 cut(s) 76, 640
BstZ17I GTATAC 1 cut(s) 1517
BsuRI GGCC 1 cut(s) 1465
BtgI CCRYGG 1 cut(s) 862
BtsCI GGATG 4 cut(s) 78, 95, 949, 1087
BtsI GCAGTG 3 cut(s) 366, 771, 1048
BtsIMutI CAGTG 9 cut(s) 12, 152, 187, 366, 395, 771, 1048, 1281, 1529
BveI ACCTGC 2 cut(s) 1376, 1468
Cac8I GCNNGC 3 cut(s) 346, 562, 1420
CaiI CAGNNNCTG 1 cut(s) 394
CfoI GCGC 1 cut(s) 1545
Csp6I GTAC 1 cut(s) 554
CspCI CAANNNNNGTGG 2 cut(s) 942, 977
CviAII CATG 3 cut(s) 363, 1022, 1419
CviQI GTAC 1 cut(s) 554
DdeI CTNAG 3 cut(s) 144, 694, 1587
DpnI GATC 4 cut(s) 78, 411, 642, 1526
DpnII GATC 4 cut(s) 76, 409, 640, 1524
DrdI GACNNNNNNGTC 1 cut(s) 1143
DseDI GACNNNNNNGTC 1 cut(s) 1143
Eam1104I CTCTTC 1 cut(s) 1446
EarI CTCTTC 1 cut(s) 1446
Eco130I CCWWGG 2 cut(s) 309, 1365
Eco24I GRGCYC 1 cut(s) 50
Eco32I GATATC 2 cut(s) 980, 1181
Eco57I CTGAAG 3 cut(s) 834, 1219, 1305
EcoRII CCWGG 1 cut(s) 267
EcoRV GATATC 2 cut(s) 980, 1181
EcoT14I CCWWGG 2 cut(s) 309, 1365
EcoT38I GRGCYC 1 cut(s) 50
ErhI CCWWGG 2 cut(s) 309, 1365
FaeI CATG 3 cut(s) 366, 1025, 1422
FalI AAGNNNNNCTT 4 cut(s) 1238, 1270, 1344, 1376
FaqI GGGAC 1 cut(s) 285
FatI CATG 3 cut(s) 362, 1021, 1418
FauNDI CATATG 1 cut(s) 125
FblI GTMKAC 1 cut(s) 1516
Fnu4HI GCNGC 1 cut(s) 154
FokI GGATG 4 cut(s) 85, 102, 936, 1094
FriOI GRGCYC 1 cut(s) 50
Fsp4HI GCNGC 1 cut(s) 154
FspBI CTAG 4 cut(s) 647, 938, 1184, 1344
GlaI GCGC 1 cut(s) 1544
GluI GCNGC 1 cut(s) 154
GsuI CTGGAG 1 cut(s) 1523
HaeII RGCGCY 1 cut(s) 1546
HaeIII GGCC 1 cut(s) 1465
HapII CCGG 2 cut(s) 1324, 1551
HhaI GCGC 1 cut(s) 1545
Hin1II CATG 3 cut(s) 366, 1025, 1422
Hin6I GCGC 1 cut(s) 1543
HinP1I GCGC 1 cut(s) 1543
HinfI GANTC 9 cut(s) 61, 305, 490, 503, 629, 749, 781, 878, 891
HpaII CCGG 2 cut(s) 1324, 1551
HphI GGTGA 5 cut(s) 257, 283, 419, 806, 1217
Hpy166II GTNNAC 2 cut(s) 1200, 1517
Hpy188I TCNGA 6 cut(s) 439, 484, 602, 697, 1155, 1582
Hpy188III TCNNGA 6 cut(s) 302, 635, 1269, 1445, 1493, 1551
Hpy8I GTNNAC 2 cut(s) 1200, 1517
Hpy99I CGWCG 2 cut(s) 606, 1058
HpyAV CCTTC 7 cut(s) 80, 245, 397, 704, 1266, 1280, 1490
HpyCH4III ACNGT 7 cut(s) 299, 612, 850, 1031, 1162, 1174, 1533
HpyCH4IV ACGT 1 cut(s) 1056
HpyF10VI GCNNNNNNNGC 1 cut(s) 1391
HpyF3I CTNAG 3 cut(s) 144, 694, 1587
HpySE526I ACGT 1 cut(s) 1056
Hsp92II CATG 3 cut(s) 366, 1025, 1422
HspAI GCGC 1 cut(s) 1543
Kpn2I TCCGGA 1 cut(s) 1550
Kzo9I GATC 4 cut(s) 76, 409, 640, 1524
LmnI GCTCC 4 cut(s) 53, 620, 713, 1499
Lsp1109I GCAGC 1 cut(s) 140
LweI GCATC 3 cut(s) 485, 573, 1072
MaeI CTAG 4 cut(s) 647, 938, 1184, 1344
MaeII ACGT 1 cut(s) 1056
MaeIII GTNAC 2 cut(s) 283, 1339
MalI GATC 4 cut(s) 78, 411, 642, 1526
MboI GATC 4 cut(s) 76, 409, 640, 1524
MboII GAAGA 5 cut(s) 499, 845, 900, 1225, 1463
MfeI CAATTG 1 cut(s) 20
MflI RGATCY 2 cut(s) 76, 640
MhlI GDGCHC 1 cut(s) 50
MluCI AATT 7 cut(s) 20, 194, 256, 355, 803, 1488, 1573
MlyI GAGTC 4 cut(s) 299, 638, 790, 885
MmeI TCCRAC 5 cut(s) 529, 598, 625, 1059, 1156
MroI TCCGGA 1 cut(s) 1550
MseI TTAA 4 cut(s) 197, 417, 578, 1059
MslI CAYNNNNRTG 3 cut(s) 243, 764, 1192
MspCI CTTAAG 1 cut(s) 577
MspI CCGG 2 cut(s) 1324, 1551
MspR9I CCNGG 2 cut(s) 269, 1325
MunI CAATTG 1 cut(s) 20
Mva1269I GAATGC 1 cut(s) 263
MvaI CCWGG 1 cut(s) 269
MvnI CGCG 1 cut(s) 1430
MwoI GCNNNNNNNGC 1 cut(s) 1391
NciI CCSGG 1 cut(s) 1325
NdeI CATATG 1 cut(s) 125
NdeII GATC 4 cut(s) 76, 409, 640, 1524
NlaIII CATG 3 cut(s) 366, 1025, 1422
NlaIV GGNNCC 4 cut(s) 49, 78, 642, 1584
NspI RCATGY 1 cut(s) 1422
PaeI GCATGC 1 cut(s) 1422
PctI GAATGC 1 cut(s) 263
PfeI GAWTC 5 cut(s) 61, 490, 503, 749, 878
PkrI GCNGC 1 cut(s) 155
PleI GAGTC 4 cut(s) 299, 637, 789, 885
PpsI GAGTC 4 cut(s) 299, 637, 789, 885
Psp6I CCWGG 1 cut(s) 267
PspGI CCWGG 1 cut(s) 267
PspN4I GGNNCC 4 cut(s) 49, 78, 642, 1584
PsrI GAACNNNNNNTAC 2 cut(s) 162, 194
PstNI CAGNNNCTG 1 cut(s) 394
PsuI RGATCY 2 cut(s) 76, 640
RsaI GTAC 1 cut(s) 555
RsaNI GTAC 1 cut(s) 554
RseI CAYNNNNRTG 3 cut(s) 243, 764, 1192
SaqAI TTAA 4 cut(s) 197, 417, 578, 1059
SatI GCNGC 1 cut(s) 154
Sau3AI GATC 4 cut(s) 76, 409, 640, 1524
ScaI AGTACT 1 cut(s) 555
SchI GAGTC 4 cut(s) 299, 638, 790, 885
ScrFI CCNGG 2 cut(s) 269, 1325
SduI GDGCHC 1 cut(s) 50
SfaNI GCATC 3 cut(s) 485, 573, 1072
SfcI CTRYAG 2 cut(s) 661, 1030
SmiMI CAYNNNNRTG 3 cut(s) 243, 764, 1192
SmlI CTYRAG 3 cut(s) 349, 577, 635
SmoI CTYRAG 3 cut(s) 349, 577, 635
SphI GCATGC 1 cut(s) 1422
Sse9I AATT 7 cut(s) 20, 194, 256, 355, 803, 1488, 1573
SsiI CCGC 1 cut(s) 243
SspMI CTAG 4 cut(s) 647, 938, 1184, 1344
StyD4I CCNGG 2 cut(s) 267, 1323
StyI CCWWGG 2 cut(s) 309, 1365
TaaI ACNGT 7 cut(s) 299, 612, 850, 1031, 1162, 1174, 1533
TaiI ACGT 1 cut(s) 1059
TaqI TCGA 2 cut(s) 84, 1147
TasI AATT 7 cut(s) 20, 194, 256, 355, 803, 1488, 1573
TatI WGTACW 1 cut(s) 553
TfiI GAWTC 5 cut(s) 61, 490, 503, 749, 878
Tru1I TTAA 4 cut(s) 197, 417, 578, 1059
Tru9I TTAA 4 cut(s) 197, 417, 578, 1059
TscAI CASTG 9 cut(s) 19, 152, 194, 373, 395, 771, 1055, 1288, 1536
TseI GCWGC 1 cut(s) 153
TspDTI ATGAA 3 cut(s) 227, 689, 1419
TspGWI ACGGA 2 cut(s) 619, 851
TspRI CASTG 9 cut(s) 19, 152, 194, 373, 395, 771, 1055, 1288, 1536
Vha464I CTTAAG 1 cut(s) 577
XapI RAATTY 2 cut(s) 256, 1488
XceI RCATGY 1 cut(s) 1422
XmiI GTMKAC 1 cut(s) 1516
XspI CTAG 4 cut(s) 647, 938, 1184, 1344
ZrmI AGTACT 1 cut(s) 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.