Rroxscaffold_2G00116790

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
44025949 .. 44027987
2039 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00116790.1

Sequence Viewer

Length: 306 bp
ATGATAGATTCTATGCCTAACAATGTAGAGAAAAAGACTCATCAGATTGTTGTTGGGAGTACTTGCAGGGTCTTCTCTATCATAAGCATTGTCCTGGTACTTGTCAGCAGGAGACAGTCAGCAGAAGCATCGAAGACAGTTGAGGATTCTTTGGTGTTGTTCAAGTACAAAGATTTAAAAAGAACTACAAACAACTTCTCAGAAAAACTTGGGGAAGGAGGTCTTGGTTCTGTTTTCAAGGGGATATTCACAGCTGTAAGAGAACTTAAAAACTCTGAACCAGGTAGAGAAGCAATTCAGTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

101

Amino Acids

11.18

Weight (kDa)

9.3

Isoelectric Point (pI)

29.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 3 cut(s) 61, 99, 167
AgsI TTSAA 2 cut(s) 163, 238
AjnI CCWGG 2 cut(s) 93, 280
AjuI GAANNNNNNNTTGG 2 cut(s) 207, 239
AluBI AGCT 1 cut(s) 254
AluI AGCT 1 cut(s) 254
Alw26I GTCTC 1 cut(s) 106
Asp700I GAANNNNTTC 1 cut(s) 294
BbsI GAAGAC 2 cut(s) 64, 140
BcgI CGANNNNNNTGC 2 cut(s) 111, 145
BciT130I CCWGG 2 cut(s) 95, 282
BcoDI GTCTC 1 cut(s) 106
BmcAI AGTACT 1 cut(s) 61
Bme1390I CCNGG 2 cut(s) 95, 282
BmrFI CCNGG 2 cut(s) 95, 282
BmsI GCATC 1 cut(s) 137
BpiI GAAGAC 2 cut(s) 64, 140
BseBI CCWGG 2 cut(s) 95, 282
BseMII CTCAG 1 cut(s) 213
BsmAI GTCTC 1 cut(s) 106
BspCNI CTCAG 1 cut(s) 212
Bst2UI CCWGG 2 cut(s) 95, 282
Bst4CI ACNGT 2 cut(s) 117, 139
BstDEI CTNAG 1 cut(s) 199
BstMAI GTCTC 1 cut(s) 106
BstNI CCWGG 2 cut(s) 95, 282
BstSCI CCNGG 2 cut(s) 93, 280
BstV2I GAAGAC 2 cut(s) 64, 140
BtsIMutI CAGTG 1 cut(s) 305
CsiI ACCWGGT 1 cut(s) 280
Csp6I GTAC 3 cut(s) 60, 98, 166
CviJI RGCY 1 cut(s) 254
CviKI_1 RGCY 1 cut(s) 254
CviQI GTAC 3 cut(s) 60, 98, 166
DdeI CTNAG 1 cut(s) 199
DraI TTTAAA 1 cut(s) 177
EcoRII CCWGG 2 cut(s) 93, 280
FaiI YATR 2 cut(s) 14, 83
FalI AAGNNNNNCTT 2 cut(s) 207, 239
HinfI GANTC 3 cut(s) 8, 37, 146
Hpy188I TCNGA 3 cut(s) 45, 202, 277
HpyAV CCTTC 1 cut(s) 209
HpyCH4III ACNGT 2 cut(s) 117, 139
HpyCH4V TGCA 1 cut(s) 66
HpyF3I CTNAG 1 cut(s) 199
LpnPI CCDG 6 cut(s) 52, 80, 94, 107, 267, 294
LweI GCATC 1 cut(s) 137
MabI ACCWGGT 1 cut(s) 280
MboII GAAGA 2 cut(s) 64, 145
MluCI AATT 1 cut(s) 294
MlyI GAGTC 1 cut(s) 31
MnlI CCTC 2 cut(s) 136, 212
MroXI GAANNNNTTC 1 cut(s) 294
MseI TTAA 2 cut(s) 176, 267
MspA1I CMGCKG 1 cut(s) 254
MspR9I CCNGG 2 cut(s) 95, 282
MvaI CCWGG 2 cut(s) 95, 282
PdmI GAANNNNTTC 1 cut(s) 294
PfeI GAWTC 2 cut(s) 8, 146
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
Psp6I CCWGG 2 cut(s) 93, 280
PspGI CCWGG 2 cut(s) 93, 280
PvuII CAGCTG 1 cut(s) 254
RsaI GTAC 3 cut(s) 61, 99, 167
RsaNI GTAC 3 cut(s) 60, 98, 166
SaqAI TTAA 2 cut(s) 176, 267
ScaI AGTACT 1 cut(s) 61
SchI GAGTC 1 cut(s) 31
ScrFI CCNGG 2 cut(s) 95, 282
SetI ASST 3 cut(s) 223, 256, 286
SexAI ACCWGGT 1 cut(s) 280
SfaNI GCATC 1 cut(s) 137
Sse9I AATT 1 cut(s) 294
StyD4I CCNGG 2 cut(s) 93, 280
TaaI ACNGT 2 cut(s) 117, 139
TaqI TCGA 1 cut(s) 131
TasI AATT 1 cut(s) 294
TatI WGTACW 2 cut(s) 59, 165
TfiI GAWTC 2 cut(s) 8, 146
Tru1I TTAA 2 cut(s) 176, 267
Tru9I TTAA 2 cut(s) 176, 267
TscAI CASTG 1 cut(s) 305
TspRI CASTG 1 cut(s) 305
XmnI GAANNNNTTC 1 cut(s) 294
ZrmI AGTACT 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.