Rh2DG350600

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000916
Physical Location & Seq
Reverse (-)
49100552 .. 49101133
582 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG350600.1

Sequence Viewer

Length: 582 bp
ATGAAGTTCTTTGTCCTGGAGAAGGGCTCCCTGCAATGGAATTTGCAATGGATGGATCCAATAGAACGATGTGATGTCTATGCTTCCTATGGTGCTTTTAGTATATGCAACCCACATAATCTTCCTCGGTGTGGCTGTCTAAAAGGATTCGAACCCAAATTCCATAAAGACTGGGAATTAGAAGATCACTCAAATGGCTGTGGAAGGAAAACTTCTTTTCATTGCAGTGATGAGGAGAATTCTGAATTCTTGTTGATGGAGAATGTTACTTACCCGAAGAGTCCCAACTCCTTGGTAGTTGATAACATTGACAAATGTAGATTAGCTTGCTTGAGAAATTGCTCATGCACTGCTTTTGCTTATGATAATCAGTGTCTGATTTGGGGAGGTGATCTATTTAATGTAAAGCAACTATCATCTGATGGAATGATAGGAAAAGTTTGGTATCTACGAGTAGCAGCATCTGAGAAGGATCAAATAATAGATTCTGGAAGTAAAAAGGGGAAGACTACTTGGATTTTGGTTGGAATACTTGCAGGCATCGTTACTCTCTTTAGCATTGTGTTGGTAGTTGTCAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase S_locus_glycop

Protein Analysis

193

Amino Acids

21.82

Weight (kDa)

6.41

Isoelectric Point (pI)

40.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 5 - 54 6.2e-13 S-locus glycoprotein domain
PAN_2 PF08276 75 - 135 2.1e-14 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 50, 63, 480
AcsI RAATTY 4 cut(s) 40, 158, 238, 245
AfiI CCNNNNNNNGG 3 cut(s) 22, 36, 131
AjnI CCWGG 1 cut(s) 15
AloI GAACNNNNNNTCC 2 cut(s) 144, 176
AluBI AGCT 1 cut(s) 326
AluI AGCT 1 cut(s) 326
AlwI GGATC 3 cut(s) 50, 63, 480
AlwNI CAGNNNCTG 2 cut(s) 376, 464
ApeKI GCWGC 1 cut(s) 458
ApoI RAATTY 4 cut(s) 40, 158, 238, 245
AsuHPI GGTGA 1 cut(s) 401
AsuII TTCGAA 1 cut(s) 150
BamHI GGATCC 1 cut(s) 55
BanII GRGCYC 1 cut(s) 29
BbsI GAAGAC 1 cut(s) 512
BbvI GCAGC 1 cut(s) 470
BccI CCATC 3 cut(s) 46, 250, 416
BciT130I CCWGG 1 cut(s) 17
BisI GCNGC 1 cut(s) 459
BlsI GCNGC 1 cut(s) 460
Bme1390I CCNGG 1 cut(s) 17
BmiI GGNNCC 2 cut(s) 28, 57
BmrFI CCNGG 1 cut(s) 17
BmrI ACTGGG 1 cut(s) 181
BmsI GCATC 2 cut(s) 470, 549
BmuI ACTGGG 1 cut(s) 181
BpiI GAAGAC 1 cut(s) 512
BplI GAGNNNNNCTC 2 cut(s) 11, 43
BpmI CTGGAG 1 cut(s) 38
Bpu14I TTCGAA 1 cut(s) 150
BpuEI CTTGAG 1 cut(s) 352
BsaJI CCNNGG 2 cut(s) 125, 291
Bsc4I CCNNNNNNNGG 3 cut(s) 22, 36, 131
Bse1I ACTGG 1 cut(s) 176
Bse3DI GCAATG 3 cut(s) 41, 53, 220
BseBI CCWGG 1 cut(s) 17
BseDI CCNNGG 2 cut(s) 125, 291
BseGI GGATG 1 cut(s) 57
BseLI CCNNNNNNNGG 3 cut(s) 22, 36, 131
BseMI GCAATG 3 cut(s) 41, 53, 220
BseMII CTCAG 1 cut(s) 456
BseNI ACTGG 1 cut(s) 176
BseRI GAGGAG 1 cut(s) 248
BseXI GCAGC 1 cut(s) 470
BslFI GGGAC 1 cut(s) 267
BslI CCNNNNNNNGG 3 cut(s) 22, 36, 131
BsmFI GGGAC 1 cut(s) 267
Bsp119I TTCGAA 1 cut(s) 150
Bsp1286I GDGCHC 1 cut(s) 29
Bsp143I GATC 4 cut(s) 55, 184, 391, 472
BspCNI CTCAG 1 cut(s) 457
BspLI GGNNCC 2 cut(s) 28, 57
BspPI GGATC 3 cut(s) 50, 63, 480
BspT104I TTCGAA 1 cut(s) 150
BsrDI GCAATG 3 cut(s) 41, 53, 220
BsrI ACTGG 1 cut(s) 176
BssECI CCNNGG 2 cut(s) 125, 291
BssMI GATC 4 cut(s) 55, 184, 391, 472
BssT1I CCWWGG 1 cut(s) 291
Bst2UI CCWGG 1 cut(s) 17
Bst6I CTCTTC 1 cut(s) 272
BstBI TTCGAA 1 cut(s) 150
BstC8I GCNNGC 2 cut(s) 328, 538
BstDEI CTNAG 1 cut(s) 465
BstENI CCTNNNNNAGG 1 cut(s) 20
BstF5I GGATG 1 cut(s) 57
BstKTI GATC 4 cut(s) 58, 187, 394, 475
BstMBI GATC 4 cut(s) 55, 184, 391, 472
BstNI CCWGG 1 cut(s) 17
BstSCI CCNGG 1 cut(s) 15
BstV1I GCAGC 1 cut(s) 470
BstV2I GAAGAC 1 cut(s) 512
BstX2I RGATCY 1 cut(s) 55
BstXI CCANNNNNNTGG 1 cut(s) 292
BstYI RGATCY 1 cut(s) 55
BtsCI GGATG 1 cut(s) 57
BtsI GCAGTG 2 cut(s) 232, 348
BtsIMutI CAGTG 3 cut(s) 232, 348, 377
Cac8I GCNNGC 2 cut(s) 328, 538
CaiI CAGNNNCTG 2 cut(s) 376, 464
CviAII CATG 1 cut(s) 345
CviJI RGCY 4 cut(s) 27, 135, 198, 326
CviKI_1 RGCY 4 cut(s) 27, 135, 198, 326
DdeI CTNAG 1 cut(s) 465
DpnI GATC 4 cut(s) 57, 186, 393, 474
DpnII GATC 4 cut(s) 55, 184, 391, 472
Eam1104I CTCTTC 1 cut(s) 272
EarI CTCTTC 1 cut(s) 272
Eco130I CCWWGG 1 cut(s) 291
Eco24I GRGCYC 1 cut(s) 29
EcoNI CCTNNNNNAGG 1 cut(s) 20
EcoRI GAATTC 2 cut(s) 238, 245
EcoRII CCWGG 1 cut(s) 15
EcoT14I CCWWGG 1 cut(s) 291
EcoT38I GRGCYC 1 cut(s) 29
ErhI CCWWGG 1 cut(s) 291
FaeI CATG 1 cut(s) 348
FaiI YATR 8 cut(s) 81, 90, 104, 106, 117, 165, 346, 363
FalI AAGNNNNNCTT 2 cut(s) 196, 228
FaqI GGGAC 1 cut(s) 267
FatI CATG 1 cut(s) 344
Fnu4HI GCNGC 1 cut(s) 459
FokI GGATG 1 cut(s) 64
FriOI GRGCYC 1 cut(s) 29
Fsp4HI GCNGC 1 cut(s) 459
GluI GCNGC 1 cut(s) 459
GsuI CTGGAG 1 cut(s) 38
Hin1II CATG 1 cut(s) 348
HinfI GANTC 3 cut(s) 147, 280, 485
HphI GGTGA 1 cut(s) 401
Hpy188I TCNGA 5 cut(s) 244, 378, 421, 466, 578
Hpy188III TCNNGA 1 cut(s) 489
HpyAV CCTTC 3 cut(s) 16, 198, 463
HpyCH4V TGCA 6 cut(s) 34, 46, 108, 225, 348, 536
HpyF3I CTNAG 1 cut(s) 465
Hsp92II CATG 1 cut(s) 348
Kzo9I GATC 4 cut(s) 55, 184, 391, 472
LmnI GCTCC 1 cut(s) 32
LpnPI CCDG 6 cut(s) 2, 29, 44, 157, 474, 522
Lsp1109I GCAGC 1 cut(s) 470
LweI GCATC 2 cut(s) 470, 549
MaeIII GTNAC 2 cut(s) 265, 544
MalI GATC 4 cut(s) 57, 186, 393, 474
MboI GATC 4 cut(s) 55, 184, 391, 472
MboII GAAGA 4 cut(s) 113, 194, 289, 517
MflI RGATCY 1 cut(s) 55
MhlI GDGCHC 1 cut(s) 29
MluCI AATT 6 cut(s) 40, 158, 176, 238, 245, 337
MlyI GAGTC 1 cut(s) 289
MmeI TCCRAC 1 cut(s) 505
MnlI CCTC 3 cut(s) 135, 226, 380
MseI TTAA 1 cut(s) 399
MslI CAYNNNNRTG 2 cut(s) 192, 225
MspR9I CCNGG 1 cut(s) 17
MvaI CCWGG 1 cut(s) 17
NdeII GATC 4 cut(s) 55, 184, 391, 472
NlaIII CATG 1 cut(s) 348
NlaIV GGNNCC 2 cut(s) 28, 57
NspV TTCGAA 1 cut(s) 150
PfeI GAWTC 2 cut(s) 147, 485
PfoI TCCNGGA 1 cut(s) 15
PkrI GCNGC 1 cut(s) 460
PleI GAGTC 1 cut(s) 288
PpsI GAGTC 1 cut(s) 288
Psp6I CCWGG 1 cut(s) 15
PspGI CCWGG 1 cut(s) 15
PspN4I GGNNCC 2 cut(s) 28, 57
PstNI CAGNNNCTG 2 cut(s) 376, 464
PsuI RGATCY 1 cut(s) 55
RseI CAYNNNNRTG 2 cut(s) 192, 225
SaqAI TTAA 1 cut(s) 399
SatI GCNGC 1 cut(s) 459
Sau3AI GATC 4 cut(s) 55, 184, 391, 472
SchI GAGTC 1 cut(s) 289
ScrFI CCNGG 1 cut(s) 17
SduI GDGCHC 1 cut(s) 29
SetI ASST 2 cut(s) 328, 391
SfaNI GCATC 2 cut(s) 470, 549
SfuI TTCGAA 1 cut(s) 150
SmiMI CAYNNNNRTG 2 cut(s) 192, 225
SmlI CTYRAG 1 cut(s) 331
SmoI CTYRAG 1 cut(s) 331
Sse9I AATT 6 cut(s) 40, 158, 176, 238, 245, 337
StyD4I CCNGG 1 cut(s) 15
StyI CCWWGG 1 cut(s) 291
TaqI TCGA 1 cut(s) 150
TasI AATT 6 cut(s) 40, 158, 176, 238, 245, 337
TfiI GAWTC 2 cut(s) 147, 485
Tru1I TTAA 1 cut(s) 399
Tru9I TTAA 1 cut(s) 399
TscAI CASTG 3 cut(s) 232, 355, 377
TseI GCWGC 1 cut(s) 458
TspDTI ATGAA 2 cut(s) 17, 209
TspRI CASTG 3 cut(s) 232, 355, 377
XagI CCTNNNNNAGG 1 cut(s) 20
XapI RAATTY 4 cut(s) 40, 158, 238, 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.