RLG00000018933

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000916
Physical Location & Seq
Reverse (-)
43045537 .. 43046875
1339 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018933

Sequence Viewer

Length: 606 bp
ATGGTGGCAATATGGTCAACTACTTATTCAACATCAAAGGGTAACAATTCTACCATAGCCATGCTTCTTGACAATGGAAACTTTGTCATAAGAGATGCATTTGATTTGTCTGATGTAATATGGCAGAGTTTCGACCCCACAACAGATACTTGGCTGCCAGGTGCAAAGCTTGGATATAATATGCTTACCAAGGAAAGCCTAGTTCTTACTCCCTGGAGAAACCGAAAAAATCCAGCGCCTGATAAGAAAAGGAGAGAAACTACGTGGATTGTTATTGGAGTAGTACTTGCTGGCTTCTTTGGTTTGTTGAGCTTTATGATGGTATTCATCAGAAAGAAACAGTCATCAGAAGAGATGGAAACAGCCGAGGATTCTTTGCTGCTATTCAAGTACATAGATTTGAGAAGAGCAACACACAACTTCTCACAAAAAATTGGGGAAGGAGCTTTTGGTTCCGTTTTCAAGGGCATGTTGTCTAATTCAACAACCATAGCAGTGAAAGAACTTAAAAGTCTGGAGCAGGGAGACAAGCAATTTCGTGCAGAAGTCAGAACTATTGGTGCAATCCAACACATCAATCTTGTTCGCTTGAGGGGTTTTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase S_locus_glycop

Protein Analysis

202

Amino Acids

22.74

Weight (kDa)

9.61

Isoelectric Point (pI)

28.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 3 - 73 3.3e-18 D-mannose binding lectin
PK_Tyr_Ser-Thr PF07714 141 - 201 7.5e-09 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 141 - 200 2.8e-07 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 285, 392
AgsI TTSAA 4 cut(s) 30, 388, 463, 483
AjnI CCWGG 2 cut(s) 157, 212
AjuI GAANNNNNNNTTGG 2 cut(s) 432, 464
AluBI AGCT 3 cut(s) 169, 312, 446
AluI AGCT 3 cut(s) 169, 312, 446
Alw26I GTCTC 1 cut(s) 519
AlwNI CAGNNNCTG 1 cut(s) 239
ApeKI GCWGC 2 cut(s) 154, 379
AspLEI GCGC 1 cut(s) 238
BbvI GCAGC 2 cut(s) 141, 366
BccI CCATC 2 cut(s) 313, 349
BciT130I CCWGG 2 cut(s) 159, 214
BcoDI GTCTC 1 cut(s) 519
BfaI CTAG 1 cut(s) 200
BfoI RGCGCY 1 cut(s) 239
BisI GCNGC 2 cut(s) 155, 380
BlsI GCNGC 2 cut(s) 156, 381
BmcAI AGTACT 1 cut(s) 285
Bme1390I CCNGG 2 cut(s) 159, 214
BmiI GGNNCC 1 cut(s) 454
BmrFI CCNGG 2 cut(s) 159, 214
BmsI GCATC 1 cut(s) 85
BpmI CTGGAG 2 cut(s) 235, 536
BsaAI YACGTR 1 cut(s) 264
BsaJI CCNNGG 3 cut(s) 189, 212, 366
BseBI CCWGG 2 cut(s) 159, 214
BseDI CCNNGG 3 cut(s) 189, 212, 366
BseXI GCAGC 2 cut(s) 141, 366
BsgI GTGCAG 1 cut(s) 561
BsmAI GTCTC 1 cut(s) 519
BspLI GGNNCC 1 cut(s) 454
BspQI GCTCTTC 1 cut(s) 400
BssECI CCNNGG 3 cut(s) 189, 212, 366
BssT1I CCWWGG 1 cut(s) 189
Bst2UI CCWGG 2 cut(s) 159, 214
Bst4CI ACNGT 1 cut(s) 342
Bst6I CTCTTC 2 cut(s) 345, 400
BstBAI YACGTR 1 cut(s) 264
BstC8I GCNNGC 1 cut(s) 292
BstH2I RGCGCY 1 cut(s) 239
BstHHI GCGC 1 cut(s) 238
BstMAI GTCTC 1 cut(s) 519
BstNI CCWGG 2 cut(s) 159, 214
BstNSI RCATGY 1 cut(s) 472
BstSCI CCNGG 2 cut(s) 157, 212
BstV1I GCAGC 2 cut(s) 141, 366
BtsI GCAGTG 1 cut(s) 501
BtsIMutI CAGTG 1 cut(s) 501
Cac8I GCNNGC 1 cut(s) 292
CaiI CAGNNNCTG 1 cut(s) 239
CfoI GCGC 1 cut(s) 238
Csp6I GTAC 2 cut(s) 284, 391
CviAII CATG 2 cut(s) 61, 469
CviJI RGCY 8 cut(s) 59, 154, 169, 198, 294, 312, 365, 446
CviKI_1 RGCY 8 cut(s) 59, 154, 169, 198, 294, 312, 365, 446
CviQI GTAC 2 cut(s) 284, 391
Eam1104I CTCTTC 2 cut(s) 345, 400
EarI CTCTTC 2 cut(s) 345, 400
Eco130I CCWWGG 1 cut(s) 189
EcoRII CCWGG 2 cut(s) 157, 212
EcoT14I CCWWGG 1 cut(s) 189
EcoT22I ATGCAT 1 cut(s) 100
ErhI CCWWGG 1 cut(s) 189
FaeI CATG 2 cut(s) 64, 472
FatI CATG 2 cut(s) 60, 468
Fnu4HI GCNGC 2 cut(s) 155, 380
Fsp4HI GCNGC 2 cut(s) 155, 380
FspBI CTAG 1 cut(s) 200
GlaI GCGC 1 cut(s) 237
GluI GCNGC 2 cut(s) 155, 380
GsuI CTGGAG 2 cut(s) 235, 536
HaeII RGCGCY 1 cut(s) 239
HhaI GCGC 1 cut(s) 238
Hin1II CATG 2 cut(s) 64, 472
Hin6I GCGC 1 cut(s) 236
HinP1I GCGC 1 cut(s) 236
HincII GTYRAC 1 cut(s) 18
HindII GTYRAC 1 cut(s) 18
HindIII AAGCTT 1 cut(s) 167
HinfI GANTC 1 cut(s) 371
Hpy166II GTNNAC 1 cut(s) 18
Hpy188I TCNGA 4 cut(s) 112, 332, 349, 551
Hpy188III TCNNGA 2 cut(s) 68, 515
Hpy8I GTNNAC 1 cut(s) 18
HpyAV CCTTC 1 cut(s) 434
HpyCH4III ACNGT 1 cut(s) 342
HpyCH4IV ACGT 1 cut(s) 263
HpyCH4V TGCA 4 cut(s) 98, 164, 542, 563
HpySE526I ACGT 1 cut(s) 263
Hsp92II CATG 2 cut(s) 64, 472
HspAI GCGC 1 cut(s) 236
LguI GCTCTTC 1 cut(s) 400
LmnI GCTCC 2 cut(s) 443, 517
LpnPI CCDG 9 cut(s) 144, 171, 199, 226, 246, 252, 276, 500, 506
Lsp1109I GCAGC 2 cut(s) 141, 366
LweI GCATC 1 cut(s) 85
MaeI CTAG 1 cut(s) 200
MaeII ACGT 1 cut(s) 263
MaeIII GTNAC 1 cut(s) 41
MboII GAAGA 2 cut(s) 362, 417
MluCI AATT 4 cut(s) 46, 432, 478, 533
MmeI TCCRAC 1 cut(s) 592
MnlI CCTC 2 cut(s) 361, 585
Mph1103I ATGCAT 1 cut(s) 100
MseI TTAA 1 cut(s) 507
MslI CAYNNNNRTG 2 cut(s) 59, 494
MspR9I CCNGG 2 cut(s) 159, 214
MvaI CCWGG 2 cut(s) 159, 214
NlaIII CATG 2 cut(s) 64, 472
NlaIV GGNNCC 1 cut(s) 454
NmeAIII GCCGAG 1 cut(s) 391
NsiI ATGCAT 1 cut(s) 100
NspI RCATGY 1 cut(s) 472
PciSI GCTCTTC 1 cut(s) 400
PfeI GAWTC 1 cut(s) 371
PkrI GCNGC 2 cut(s) 156, 381
Ppu21I YACGTR 1 cut(s) 264
Psp6I CCWGG 2 cut(s) 157, 212
PspGI CCWGG 2 cut(s) 157, 212
PspN4I GGNNCC 1 cut(s) 454
PstNI CAGNNNCTG 1 cut(s) 239
RsaI GTAC 2 cut(s) 285, 392
RsaNI GTAC 2 cut(s) 284, 391
RseI CAYNNNNRTG 2 cut(s) 59, 494
SapI GCTCTTC 1 cut(s) 400
SaqAI TTAA 1 cut(s) 507
SatI GCNGC 2 cut(s) 155, 380
ScaI AGTACT 1 cut(s) 285
ScrFI CCNGG 2 cut(s) 159, 214
SetI ASST 5 cut(s) 163, 171, 266, 314, 448
SfaNI GCATC 1 cut(s) 85
SmiMI CAYNNNNRTG 2 cut(s) 59, 494
SmlI CTYRAG 1 cut(s) 589
SmoI CTYRAG 1 cut(s) 589
Sse9I AATT 4 cut(s) 46, 432, 478, 533
SspMI CTAG 1 cut(s) 200
StyD4I CCNGG 2 cut(s) 157, 212
StyI CCWWGG 1 cut(s) 189
TaaI ACNGT 1 cut(s) 342
TaiI ACGT 1 cut(s) 266
TaqI TCGA 1 cut(s) 132
TasI AATT 4 cut(s) 46, 432, 478, 533
TatI WGTACW 2 cut(s) 283, 390
TfiI GAWTC 1 cut(s) 371
Tru1I TTAA 1 cut(s) 507
Tru9I TTAA 1 cut(s) 507
TscAI CASTG 1 cut(s) 501
TseI GCWGC 2 cut(s) 154, 379
TspDTI ATGAA 1 cut(s) 316
TspGWI ACGGA 1 cut(s) 445
TspRI CASTG 1 cut(s) 501
XceI RCATGY 1 cut(s) 472
XspI CTAG 1 cut(s) 200
ZrmI AGTACT 1 cut(s) 285
Zsp2I ATGCAT 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.