Rmu_sc0000516.1_g000045

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000516.1
OG0000916
Physical Location & Seq
Reverse (-)
207231 .. 209106
1876 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000516.1_g000045.1.cds

Sequence Viewer

Length: 1317 bp
atgacaagcccagcccaatactgcttcagccaccaccgacccctgtacctccgtcgcagctccacctgtttcgcgtcgccgccgtcatcagcgctcccccagcctcgcaacctaagatcacacatcgtccctcctccgcttttgactccgcacgatccgaaaactgcttccagaccagcgacttccggccggccccacgacaacatcctcattcgcggacaccccctcccccaaagaggcaaagagtaccagaccaccggtcgtcatcggccgcaatctcctcgaccacttctgtcgaatcccagcgatccaccgccggcccattgcatcacctcaatcaacaaatccagatacatcgatcggagttgggtactcttcgtgccccaaaactccgccgtcggccgctcatcttccaagccgcgtctcaccttggtcgatcctctccctccatcctcgattgcgagagcatctgcaaagcacgcgtctatcggagcgttggagtcttttgaggattctctagtgctgttcaacttcagagatttaagaaaagcaacagaaaacttctatgagaaacttggagaaggagcttttggttctgttttcaaggggatgttgcctaattcaactcccatagcagtgaaacaactaaagagtctgttgcagggtgaaaagcaatttcaggctgaagcgagaactcttggtgcaatccaacacattaatcttcttcgcctccgtgggttttgtgcagattctacaagaagactcttagtttatgactacgtgcccaatggctctctacaatctgttctagttcaaaaccatccactaatcttagattggaaagcaagatatcaaattgccataggcattgcaagaggattggcttacctccatgagaactgcagagattttataatacactgtgacattaagccagagaacatttgttggatgaagaatatagtccaaaagttgcagactttggtgaagccatcactccaaaagcagatgtcttcagctatggaaagttgctgtttgaggttatatctggaaggagaaacagtgaagggaggtaatgctgacaaagatgaactcattagagcatgcaaagtcgcgtgttggtgtattcaagatgaggagaaggatacgccaacaatgaggcaggtttttcaaattctcgaaggagctttagatgttggtatacccccgatcccacagtttctccagcaccttcccgaagttcagtggaagcaatcaattaccgagaacctacgtcaagttcagaaatcatattccttagctgatcagtggctttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase S_locus_glycop

Protein Analysis

438

Amino Acids

49.3

Weight (kDa)

9.43

Isoelectric Point (pI)

59.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 914
Acc36I ACCTGC 1 cut(s) 1153
AccBSI CCGCTC 1 cut(s) 405
AccI GTMKAC 1 cut(s) 1201
AccII CGCG 5 cut(s) 74, 216, 421, 482, 1115
AciI CCGC 9 cut(s) 80, 137, 149, 216, 272, 314, 393, 403, 419
AclWI GGATC 4 cut(s) 149, 302, 431, 1204
AcoI YGGCCR 3 cut(s) 187, 269, 400
AcsI RAATTY 1 cut(s) 1173
AcuI CTGAAG 4 cut(s) 10, 517, 705, 999
AfaI GTAC 3 cut(s) 47, 248, 372
AfeI AGCGCT 1 cut(s) 93
AfiI CCNNNNNNNGG 1 cut(s) 236
AflIII ACRYGT 1 cut(s) 480
AgeI ACCGGT 1 cut(s) 257
AgsI TTSAA 6 cut(s) 529, 604, 624, 815, 1130, 1172
AhdI GACNNNNNGTC 1 cut(s) 258
AjuI GAANNNNNNNTTGG 2 cut(s) 573, 605
AluBI AGCT 5 cut(s) 60, 587, 1019, 1187, 1301
AluI AGCT 5 cut(s) 60, 587, 1019, 1187, 1301
Alw26I GTCTC 1 cut(s) 428
AlwI GGATC 4 cut(s) 149, 302, 431, 1204
Aor51HI AGCGCT 1 cut(s) 93
AoxI GGCC 5 cut(s) 187, 191, 269, 318, 400
ApeKI GCWGC 1 cut(s) 57
ApoI RAATTY 1 cut(s) 1173
ArsI GACNNNNNNTTYG 2 cut(s) 467, 499
AseI ATTAAT 1 cut(s) 717
AsiGI ACCGGT 1 cut(s) 257
AspLEI GCGC 1 cut(s) 94
AspS9I GGNCC 2 cut(s) 192, 319
AsuHPI GGTGA 4 cut(s) 322, 418, 677, 997
BaeGI GKGCMC 2 cut(s) 384, 786
BaeI ACNNNNGTAYC 2 cut(s) 29, 62
BbsI GAAGAC 2 cut(s) 766, 1005
BbvI GCAGC 1 cut(s) 69
BccI CCATC 3 cut(s) 457, 828, 1000
BceAI ACGGC 2 cut(s) 67, 380
BcgI CGANNNNNNTGC 2 cut(s) 263, 297
BciVI GTATCC 1 cut(s) 1138
BclI TGATCA 1 cut(s) 1303
BcoDI GTCTC 1 cut(s) 428
BfaI CTAG 2 cut(s) 518, 809
BfmI CTRYAG 1 cut(s) 901
BfoI RGCGCY 1 cut(s) 95
BfuAI ACCTGC 1 cut(s) 1153
BfuI GTATCC 1 cut(s) 1138
BisI GCNGC 5 cut(s) 58, 80, 272, 403, 419
BlsI GCNGC 5 cut(s) 59, 81, 273, 404, 420
BmeRI GACNNNNNGTC 1 cut(s) 258
BmgT120I GGNCC 2 cut(s) 192, 319
BmiI GGNNCC 1 cut(s) 194
BmsI GCATC 2 cut(s) 336, 476
BpiI GAAGAC 2 cut(s) 766, 1005
BpmI CTGGAG 1 cut(s) 1208
Bpu10I CCTNAGC 1 cut(s) 1297
Bsa29I ATCGAT 1 cut(s) 357
BsaAI YACGTR 1 cut(s) 781
BsaJI CCNNGG 2 cut(s) 429, 733
BsaWI WCCGGW 1 cut(s) 257
BsaXI ACNNNNNCTCC 6 cut(s) 210, 240, 1047, 1077, 1206, 1236
Bsc4I CCNNNNNNNGG 1 cut(s) 236
Bse118I RCCGGY 3 cut(s) 189, 257, 316
Bse3DI GCAATG 2 cut(s) 322, 867
BseCI ATCGAT 1 cut(s) 357
BseDI CCNNGG 2 cut(s) 429, 733
BseGI GGATG 5 cut(s) 204, 449, 615, 820, 957
BseLI CCNNNNNNNGG 1 cut(s) 236
BseMI GCAATG 2 cut(s) 322, 867
BseRI GAGGAG 3 cut(s) 123, 270, 1151
BseSI GKGCMC 2 cut(s) 384, 786
BseX3I CGGCCG 3 cut(s) 187, 269, 400
BseXI GCAGC 1 cut(s) 69
BseYI CCCAGC 3 cut(s) 10, 99, 302
BsgI GTGCAG 1 cut(s) 765
Bsh1236I CGCG 5 cut(s) 74, 216, 421, 482, 1115
Bsh1285I CGRYCG 5 cut(s) 190, 262, 272, 361, 403
BshFI GGCC 5 cut(s) 189, 193, 271, 320, 402
BshTI ACCGGT 1 cut(s) 257
BshVI ATCGAT 1 cut(s) 357
BsiEI CGRYCG 5 cut(s) 190, 262, 272, 361, 403
BsiSI CCGG 4 cut(s) 186, 190, 258, 317
BslFI GGGAC 1 cut(s) 113
BslI CCNNNNNNNGG 1 cut(s) 236
BsmAI GTCTC 1 cut(s) 428
BsmBI CGTCTC 1 cut(s) 428
BsmFI GGGAC 1 cut(s) 113
BsnI GGCC 5 cut(s) 189, 193, 271, 320, 402
Bsp1286I GDGCHC 2 cut(s) 384, 786
Bsp143I GATC 7 cut(s) 116, 154, 307, 358, 436, 1209, 1303
BspACI CCGC 9 cut(s) 80, 137, 149, 216, 272, 314, 393, 403, 419
BspANI GGCC 5 cut(s) 189, 193, 271, 320, 402
BspDI ATCGAT 1 cut(s) 357
BspFNI CGCG 5 cut(s) 74, 216, 421, 482, 1115
BspLI GGNNCC 1 cut(s) 194
BspMAI CTGCAG 1 cut(s) 905
BspMI ACCTGC 1 cut(s) 1153
BspPI GGATC 4 cut(s) 149, 302, 431, 1204
BsrBI CCGCTC 1 cut(s) 405
BsrDI GCAATG 2 cut(s) 322, 867
BsrFI RCCGGY 3 cut(s) 189, 257, 316
BssAI RCCGGY 3 cut(s) 189, 257, 316
BssECI CCNNGG 2 cut(s) 429, 733
BssMI GATC 7 cut(s) 116, 154, 307, 358, 436, 1209, 1303
BssNAI GTATAC 1 cut(s) 1202
BssT1I CCWWGG 1 cut(s) 429
Bst1107I GTATAC 1 cut(s) 1202
Bst4CI ACNGT 3 cut(s) 923, 1063, 1218
Bst6I CTCTTC 1 cut(s) 380
BstBAI YACGTR 1 cut(s) 781
BstC8I GCNNGC 4 cut(s) 191, 318, 480, 1105
BstDEI CTNAG 4 cut(s) 113, 766, 832, 1297
BstDSI CCRYGG 1 cut(s) 733
BstF5I GGATG 5 cut(s) 204, 449, 615, 820, 957
BstFNI CGCG 5 cut(s) 74, 216, 421, 482, 1115
BstH2I RGCGCY 1 cut(s) 95
BstHHI GCGC 1 cut(s) 94
BstKTI GATC 7 cut(s) 119, 157, 310, 361, 439, 1212, 1306
BstMAI GTCTC 1 cut(s) 428
BstMBI GATC 7 cut(s) 116, 154, 307, 358, 436, 1209, 1303
BstMCI CGRYCG 5 cut(s) 190, 262, 272, 361, 403
BstMWI GCNNNNNNNGC 2 cut(s) 100, 479
BstNSI RCATGY 1 cut(s) 1107
BstSFI CTRYAG 1 cut(s) 901
BstSLI GKGCMC 2 cut(s) 384, 786
BstUI CGCG 5 cut(s) 74, 216, 421, 482, 1115
BstV1I GCAGC 1 cut(s) 69
BstV2I GAAGAC 2 cut(s) 766, 1005
BstZ17I GTATAC 1 cut(s) 1202
BstZI CGGCCG 3 cut(s) 187, 269, 400
Bsu15I ATCGAT 1 cut(s) 357
BsuI GTATCC 1 cut(s) 1138
BsuRI GGCC 5 cut(s) 189, 193, 271, 320, 402
BsuTUI ATCGAT 1 cut(s) 357
BtgI CCRYGG 1 cut(s) 733
BtsCI GGATG 5 cut(s) 204, 449, 615, 820, 957
BtsI GCAGTG 1 cut(s) 642
BtsIMutI CAGTG 5 cut(s) 642, 919, 1068, 1250, 1313
BveI ACCTGC 1 cut(s) 1153
Cac8I GCNNGC 4 cut(s) 191, 318, 480, 1105
CfoI GCGC 1 cut(s) 94
Cfr10I RCCGGY 3 cut(s) 189, 257, 316
Cfr13I GGNCC 2 cut(s) 192, 319
ClaI ATCGAT 1 cut(s) 357
CseI GACGC 3 cut(s) 63, 410, 471
Csp6I GTAC 3 cut(s) 46, 247, 371
CspAI ACCGGT 1 cut(s) 257
CviAII CATG 2 cut(s) 893, 1104
CviQI GTAC 3 cut(s) 46, 247, 371
DdeI CTNAG 4 cut(s) 113, 766, 832, 1297
DpnI GATC 7 cut(s) 118, 156, 309, 360, 438, 1211, 1305
DpnII GATC 7 cut(s) 116, 154, 307, 358, 436, 1209, 1303
DriI GACNNNNNGTC 1 cut(s) 258
EaeI YGGCCR 3 cut(s) 187, 269, 400
EagI CGGCCG 3 cut(s) 187, 269, 400
Eam1104I CTCTTC 1 cut(s) 380
Eam1105I GACNNNNNGTC 1 cut(s) 258
EarI CTCTTC 1 cut(s) 380
EciI GGCGGA 1 cut(s) 382
EclXI CGGCCG 3 cut(s) 187, 269, 400
Eco130I CCWWGG 1 cut(s) 429
Eco32I GATATC 1 cut(s) 851
Eco47III AGCGCT 1 cut(s) 93
Eco52I CGGCCG 3 cut(s) 187, 269, 400
Eco57I CTGAAG 4 cut(s) 10, 517, 705, 999
EcoRV GATATC 1 cut(s) 851
EcoT14I CCWWGG 1 cut(s) 429
ErhI CCWWGG 1 cut(s) 429
Esp3I CGTCTC 1 cut(s) 428
FaeI CATG 2 cut(s) 896, 1107
FaqI GGGAC 1 cut(s) 113
FatI CATG 2 cut(s) 892, 1103
FbaI TGATCA 1 cut(s) 1303
FblI GTMKAC 1 cut(s) 1201
Fnu4HI GCNGC 5 cut(s) 58, 80, 272, 403, 419
FokI GGATG 5 cut(s) 191, 436, 622, 807, 964
FseI GGCCGGCC 1 cut(s) 193
Fsp4HI GCNGC 5 cut(s) 58, 80, 272, 403, 419
FspBI CTAG 2 cut(s) 518, 809
GlaI GCGC 1 cut(s) 93
GluI GCNGC 5 cut(s) 58, 80, 272, 403, 419
GsaI CCCAGC 3 cut(s) 14, 103, 306
GsuI CTGGAG 1 cut(s) 1208
HaeII RGCGCY 1 cut(s) 95
HaeIII GGCC 5 cut(s) 189, 193, 271, 320, 402
HapII CCGG 4 cut(s) 186, 190, 258, 317
HgaI GACGC 3 cut(s) 63, 410, 471
HhaI GCGC 1 cut(s) 94
Hin1II CATG 2 cut(s) 896, 1107
Hin6I GCGC 1 cut(s) 92
HinP1I GCGC 1 cut(s) 92
HinfI GANTC 7 cut(s) 145, 298, 500, 512, 652, 749, 762
HpaII CCGG 4 cut(s) 186, 190, 258, 317
HphI GGTGA 4 cut(s) 322, 418, 677, 997
Hpy166II GTNNAC 1 cut(s) 1202
Hpy188I TCNGA 5 cut(s) 159, 363, 491, 536, 1284
Hpy188III TCNNGA 6 cut(s) 171, 348, 1049, 1130, 1178, 1235
Hpy8I GTNNAC 1 cut(s) 1202
Hpy99I CGWCG 3 cut(s) 57, 79, 401
HpyAV CCTTC 6 cut(s) 575, 1046, 1060, 1135, 1175, 1241
HpyCH4III ACNGT 3 cut(s) 923, 1063, 1218
HpyCH4IV ACGT 2 cut(s) 780, 1273
HpyCH4V TGCA 9 cut(s) 327, 473, 661, 704, 746, 872, 903, 976, 1107
HpyF10VI GCNNNNNNNGC 2 cut(s) 100, 479
HpyF3I CTNAG 4 cut(s) 113, 766, 832, 1297
HpySE526I ACGT 2 cut(s) 780, 1273
Hsp92II CATG 2 cut(s) 896, 1107
HspAI GCGC 1 cut(s) 92
KroI GCCGGC 2 cut(s) 189, 316
KroNI GCCGGC 2 cut(s) 191, 318
Ksp22I TGATCA 1 cut(s) 1303
Kzo9I GATC 7 cut(s) 116, 154, 307, 358, 436, 1209, 1303
LmnI GCTCC 5 cut(s) 65, 99, 491, 584, 1184
Lsp1109I GCAGC 1 cut(s) 69
LweI GCATC 2 cut(s) 336, 476
MaeI CTAG 2 cut(s) 518, 809
MaeII ACGT 2 cut(s) 780, 1273
MaeIII GTNAC 1 cut(s) 923
MalI GATC 7 cut(s) 118, 156, 309, 360, 438, 1211, 1305
MbiI CCGCTC 1 cut(s) 405
MboI GATC 7 cut(s) 116, 154, 307, 358, 436, 1209, 1303
MboII GAAGA 7 cut(s) 367, 402, 713, 716, 771, 967, 1005
MhlI GDGCHC 2 cut(s) 384, 786
MluCI AATT 5 cut(s) 619, 674, 855, 1173, 1257
MluI ACGCGT 1 cut(s) 480
MlyI GAGTC 4 cut(s) 139, 509, 661, 756
MmeI TCCRAC 3 cut(s) 477, 733, 929
MroNI GCCGGC 2 cut(s) 189, 316
MseI TTAA 3 cut(s) 542, 717, 930
MslI CAYNNNNRTG 1 cut(s) 635
MspI CCGG 4 cut(s) 186, 190, 258, 317
MvnI CGCG 5 cut(s) 74, 216, 421, 482, 1115
MwoI GCNNNNNNNGC 2 cut(s) 100, 479
NaeI GCCGGC 2 cut(s) 191, 318
NdeII GATC 7 cut(s) 116, 154, 307, 358, 436, 1209, 1303
NgoMIV GCCGGC 2 cut(s) 189, 316
NlaIII CATG 2 cut(s) 896, 1107
NlaIV GGNNCC 1 cut(s) 194
NmuCI GTSAC 1 cut(s) 923
NspI RCATGY 1 cut(s) 1107
PaeI GCATGC 1 cut(s) 1107
PdiI GCCGGC 2 cut(s) 191, 318
PfeI GAWTC 3 cut(s) 298, 512, 749
PinAI ACCGGT 1 cut(s) 257
PkrI GCNGC 5 cut(s) 59, 81, 273, 404, 420
Ple19I CGATCG 1 cut(s) 361
PleI GAGTC 4 cut(s) 139, 508, 660, 756
PpsI GAGTC 4 cut(s) 139, 508, 660, 756
Ppu21I YACGTR 1 cut(s) 781
PshBI ATTAAT 1 cut(s) 717
PsiI TTATAA 1 cut(s) 914
PspFI CCCAGC 3 cut(s) 10, 99, 302
PspN4I GGNNCC 1 cut(s) 194
PspPI GGNCC 2 cut(s) 192, 319
PstI CTGCAG 1 cut(s) 905
PvuI CGATCG 1 cut(s) 361
RigI GGCCGGCC 1 cut(s) 193
RsaI GTAC 3 cut(s) 47, 248, 372
RsaNI GTAC 3 cut(s) 46, 247, 371
RseI CAYNNNNRTG 1 cut(s) 635
SaqAI TTAA 3 cut(s) 542, 717, 930
SatI GCNGC 5 cut(s) 58, 80, 272, 403, 419
Sau3AI GATC 7 cut(s) 116, 154, 307, 358, 436, 1209, 1303
Sau96I GGNCC 2 cut(s) 192, 319
SchI GAGTC 4 cut(s) 139, 509, 661, 756
SduI GDGCHC 2 cut(s) 384, 786
SfaNI GCATC 2 cut(s) 336, 476
SfcI CTRYAG 1 cut(s) 901
SmiMI CAYNNNNRTG 1 cut(s) 635
SphI GCATGC 1 cut(s) 1107
Sse9I AATT 5 cut(s) 619, 674, 855, 1173, 1257
SsiI CCGC 9 cut(s) 80, 137, 149, 216, 272, 314, 393, 403, 419
SspMI CTAG 2 cut(s) 518, 809
StyI CCWWGG 1 cut(s) 429
TaaI ACNGT 3 cut(s) 923, 1063, 1218
TaiI ACGT 2 cut(s) 783, 1276
TaqI TCGA 6 cut(s) 283, 296, 357, 435, 455, 1179
TasI AATT 5 cut(s) 619, 674, 855, 1173, 1257
TauI GCSGC 4 cut(s) 82, 274, 405, 421
TfiI GAWTC 3 cut(s) 298, 512, 749
Tru1I TTAA 3 cut(s) 542, 717, 930
Tru9I TTAA 3 cut(s) 542, 717, 930
TscAI CASTG 5 cut(s) 642, 926, 1068, 1250, 1313
TseFI GTSAC 1 cut(s) 923
TseI GCWGC 1 cut(s) 57
Tsp45I GTSAC 1 cut(s) 923
TspDTI ATGAA 2 cut(s) 968, 1104
TspGWI ACGGA 2 cut(s) 41, 722
TspRI CASTG 5 cut(s) 642, 926, 1068, 1250, 1313
VspI ATTAAT 1 cut(s) 717
XapI RAATTY 1 cut(s) 1173
XceI RCATGY 1 cut(s) 1107
XmiI GTMKAC 1 cut(s) 1201
XspI CTAG 2 cut(s) 518, 809
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.