Rorug02G0271000

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000916
Physical Location & Seq
Forward (+)
28742738 .. 28745743
3006 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0271000.1

Sequence Viewer

Length: 570 bp
ATGGGCGGATGTGCAACGAAGCCTAAGGTGTCAAAGGCCGAGGAAGCCGGCGGGGAGGCGCCAGTGCCGGCTCCAGAGACAGCCAAGGAAGAAGCTGTCGTGATCGAGTCGAAGGAGAAAGACGTAGTTGTGATTGGTGATGAAGCTGAGAAGAAGATAGAAGGTGATGATTCAGTCAAGGAGATCGTTGATGATGAAGATAAACGCAAGTCTCTCAGCAATTTGTTCCAGAGTGAAGAAGGGAAGGACTCGACAGAAAAAGAGAAAACAACAGAAGTACTATCAGAAACTGAAAAGCCTCTAGAGGAAAATACCCCTGGCATTGTTGTTGTTGATGCTCCAAAGACAGCCGAGTCAGCTGAGGTAGTAATTGAAGCTGCACCAGCAGAGACAGAAGCCAAAGAAGCTTCCGATGAAAAAATCACTGAAGAAGTGGTTGAAAAGATCACAGAAGAAGTCAAGGAAATTGCTGAAGAGAACGTTGGAAAAGAAAAATCCGAAGGACAAAAAGAGACCGAAGCAGCGAAGGAAGAAAAAGTGGCTGAAGAGAAACCTAAGGAAGCAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase S_locus_glycop

Protein Analysis

189

Amino Acids

20.37

Weight (kDa)

4.39

Isoelectric Point (pI)

54.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 352
AccB1I GGYRCC 1 cut(s) 58
AciI CCGC 2 cut(s) 6, 51
AclI AACGTT 1 cut(s) 480
AcuI CTGAAG 3 cut(s) 447, 492, 564
AcyI GRCGYC 1 cut(s) 59
AfaI GTAC 1 cut(s) 279
AgsI TTSAA 2 cut(s) 374, 440
AjnI CCWGG 1 cut(s) 316
AjuI GAANNNNNNNTTGG 2 cut(s) 465, 497
AluBI AGCT 5 cut(s) 95, 146, 359, 377, 407
AluI AGCT 5 cut(s) 95, 146, 359, 377, 407
Alw26I GTCTC 4 cut(s) 71, 216, 383, 506
AlwNI CAGNNNCTG 1 cut(s) 290
AoxI GGCC 1 cut(s) 36
ApeKI GCWGC 2 cut(s) 377, 521
AspLEI GCGC 1 cut(s) 61
AsuHPI GGTGA 2 cut(s) 149, 176
AxyI CCTNAGG 2 cut(s) 24, 555
BanI GGYRCC 1 cut(s) 58
BbvCI CCTCAGC 1 cut(s) 360
BbvI GCAGC 2 cut(s) 364, 533
BciT130I CCWGG 1 cut(s) 318
BcoDI GTCTC 4 cut(s) 71, 216, 383, 506
BfaI CTAG 1 cut(s) 302
BfoI RGCGCY 1 cut(s) 62
BisI GCNGC 2 cut(s) 378, 522
BlsI GCNGC 2 cut(s) 379, 523
BmcAI AGTACT 1 cut(s) 279
Bme1390I CCNGG 1 cut(s) 318
BmiI GGNNCC 2 cut(s) 60, 72
BmrFI CCNGG 1 cut(s) 318
BmsI GCATC 1 cut(s) 325
BpmI CTGGAG 1 cut(s) 57
Bpu10I CCTNAGC 1 cut(s) 360
BsaHI GRCGYC 1 cut(s) 59
BsaI GGTCTC 1 cut(s) 506
BsaJI CCNNGG 3 cut(s) 39, 84, 316
Bse118I RCCGGY 2 cut(s) 47, 67
Bse1I ACTGG 1 cut(s) 62
Bse21I CCTNAGG 2 cut(s) 24, 555
BseBI CCWGG 1 cut(s) 318
BseDI CCNNGG 3 cut(s) 39, 84, 316
BseGI GGATG 1 cut(s) 14
BseMII CTCAG 3 cut(s) 138, 229, 351
BseNI ACTGG 1 cut(s) 62
BseXI GCAGC 2 cut(s) 364, 533
BsgI GTGCAG 1 cut(s) 363
BshFI GGCC 1 cut(s) 38
BshNI GGYRCC 1 cut(s) 58
BsiSI CCGG 2 cut(s) 48, 68
BsmAI GTCTC 4 cut(s) 71, 216, 383, 506
BsnI GGCC 1 cut(s) 38
Bso31I GGTCTC 1 cut(s) 506
Bsp143I GATC 3 cut(s) 102, 183, 444
BspACI CCGC 2 cut(s) 6, 51
BspANI GGCC 1 cut(s) 38
BspCNI CTCAG 3 cut(s) 139, 228, 352
BspLI GGNNCC 2 cut(s) 60, 72
BspT107I GGYRCC 1 cut(s) 58
BspTNI GGTCTC 1 cut(s) 506
BsrFI RCCGGY 2 cut(s) 47, 67
BsrI ACTGG 1 cut(s) 62
BssAI RCCGGY 2 cut(s) 47, 67
BssECI CCNNGG 3 cut(s) 39, 84, 316
BssMI GATC 3 cut(s) 102, 183, 444
BssNI GRCGYC 1 cut(s) 59
BssT1I CCWWGG 1 cut(s) 84
Bst2UI CCWGG 1 cut(s) 318
Bst6I CTCTTC 2 cut(s) 468, 540
BstACI GRCGYC 1 cut(s) 59
BstC8I GCNNGC 2 cut(s) 49, 69
BstDEI CTNAG 5 cut(s) 24, 147, 215, 360, 555
BstF5I GGATG 1 cut(s) 14
BstH2I RGCGCY 1 cut(s) 62
BstHHI GCGC 1 cut(s) 61
BstKTI GATC 3 cut(s) 105, 186, 447
BstMAI GTCTC 4 cut(s) 71, 216, 383, 506
BstMBI GATC 3 cut(s) 102, 183, 444
BstMWI GCNNNNNNNGC 4 cut(s) 44, 356, 383, 404
BstNI CCWGG 1 cut(s) 318
BstSCI CCNGG 1 cut(s) 316
BstV1I GCAGC 2 cut(s) 364, 533
Bsu36I CCTNAGG 2 cut(s) 24, 555
BsuRI GGCC 1 cut(s) 38
BtsCI GGATG 1 cut(s) 14
BtsIMutI CAGTG 2 cut(s) 69, 423
Cac8I GCNNGC 2 cut(s) 49, 69
CaiI CAGNNNCTG 1 cut(s) 290
CfoI GCGC 1 cut(s) 61
Cfr10I RCCGGY 2 cut(s) 47, 67
Csp6I GTAC 1 cut(s) 278
CviQI GTAC 1 cut(s) 278
DdeI CTNAG 5 cut(s) 24, 147, 215, 360, 555
DinI GGCGCC 1 cut(s) 60
DpnI GATC 3 cut(s) 104, 185, 446
DpnII GATC 3 cut(s) 102, 183, 444
DrdI GACNNNNNNGTC 1 cut(s) 352
DseDI GACNNNNNNGTC 1 cut(s) 352
Eam1104I CTCTTC 2 cut(s) 468, 540
EarI CTCTTC 2 cut(s) 468, 540
EciI GGCGGA 1 cut(s) 21
Eco130I CCWWGG 1 cut(s) 84
Eco31I GGTCTC 1 cut(s) 506
Eco57I CTGAAG 3 cut(s) 447, 492, 564
Eco81I CCTNAGG 2 cut(s) 24, 555
EcoRII CCWGG 1 cut(s) 316
EcoT14I CCWWGG 1 cut(s) 84
EgeI GGCGCC 1 cut(s) 60
EheI GGCGCC 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 84
FaiI YATR 1 cut(s) 568
FauI CCCGC 1 cut(s) 44
Fnu4HI GCNGC 2 cut(s) 378, 522
FokI GGATG 1 cut(s) 21
Fsp4HI GCNGC 2 cut(s) 378, 522
FspBI CTAG 1 cut(s) 302
GlaI GCGC 1 cut(s) 60
GluI GCNGC 2 cut(s) 378, 522
GsuI CTGGAG 1 cut(s) 57
HaeII RGCGCY 1 cut(s) 62
HaeIII GGCC 1 cut(s) 38
HapII CCGG 2 cut(s) 48, 68
HhaI GCGC 1 cut(s) 61
Hin1I GRCGYC 1 cut(s) 59
Hin6I GCGC 1 cut(s) 59
HinP1I GCGC 1 cut(s) 59
HindIII AAGCTT 1 cut(s) 405
HinfI GANTC 4 cut(s) 107, 170, 248, 353
HpaII CCGG 2 cut(s) 48, 68
HphI GGTGA 2 cut(s) 149, 176
Hpy188I TCNGA 3 cut(s) 286, 412, 499
Hpy188III TCNNGA 4 cut(s) 74, 100, 229, 302
HpyAV CCTTC 6 cut(s) 106, 155, 233, 238, 494, 520
HpyCH4IV ACGT 2 cut(s) 123, 480
HpyCH4V TGCA 2 cut(s) 14, 380
HpyF10VI GCNNNNNNNGC 4 cut(s) 44, 356, 383, 404
HpyF3I CTNAG 5 cut(s) 24, 147, 215, 360, 555
HpySE526I ACGT 2 cut(s) 123, 480
Hsp92I GRCGYC 1 cut(s) 59
HspAI GCGC 1 cut(s) 59
KasI GGCGCC 1 cut(s) 58
KroI GCCGGC 2 cut(s) 47, 67
KroNI GCCGGC 2 cut(s) 49, 69
Kzo9I GATC 3 cut(s) 102, 183, 444
LmnI GCTCC 2 cut(s) 76, 343
LpnPI CCDG 8 cut(s) 61, 75, 81, 87, 242, 303, 330, 396
Lsp1109I GCAGC 2 cut(s) 364, 533
LweI GCATC 1 cut(s) 325
MaeI CTAG 1 cut(s) 302
MaeII ACGT 2 cut(s) 123, 480
MalI GATC 3 cut(s) 104, 185, 446
MboI GATC 3 cut(s) 102, 183, 444
MluCI AATT 3 cut(s) 220, 369, 465
Mly113I GGCGCC 1 cut(s) 59
MlyI GAGTC 3 cut(s) 116, 242, 362
MmeI TCCRAC 1 cut(s) 463
MnlI CCTC 5 cut(s) 34, 49, 298, 309, 355
MroNI GCCGGC 2 cut(s) 47, 67
MspA1I CMGCKG 1 cut(s) 359
MspI CCGG 2 cut(s) 48, 68
MspR9I CCNGG 1 cut(s) 318
MvaI CCWGG 1 cut(s) 318
MwoI GCNNNNNNNGC 4 cut(s) 44, 356, 383, 404
NaeI GCCGGC 2 cut(s) 49, 69
NarI GGCGCC 1 cut(s) 59
NdeII GATC 3 cut(s) 102, 183, 444
NgoMIV GCCGGC 2 cut(s) 47, 67
NlaIV GGNNCC 2 cut(s) 60, 72
NmeAIII GCCGAG 2 cut(s) 64, 376
PdiI GCCGGC 2 cut(s) 49, 69
PfeI GAWTC 1 cut(s) 170
PkrI GCNGC 2 cut(s) 379, 523
PleI GAGTC 3 cut(s) 115, 242, 361
PluTI GGCGCC 1 cut(s) 62
PpsI GAGTC 3 cut(s) 115, 242, 361
Psp1406I AACGTT 1 cut(s) 480
Psp6I CCWGG 1 cut(s) 316
PspGI CCWGG 1 cut(s) 316
PspN4I GGNNCC 2 cut(s) 60, 72
PstNI CAGNNNCTG 1 cut(s) 290
PvuII CAGCTG 1 cut(s) 359
RsaI GTAC 1 cut(s) 279
RsaNI GTAC 1 cut(s) 278
SatI GCNGC 2 cut(s) 378, 522
Sau3AI GATC 3 cut(s) 102, 183, 444
ScaI AGTACT 1 cut(s) 279
SchI GAGTC 3 cut(s) 116, 242, 362
ScrFI CCNGG 1 cut(s) 318
SfaNI GCATC 1 cut(s) 325
SfoI GGCGCC 1 cut(s) 60
Sse9I AATT 3 cut(s) 220, 369, 465
SsiI CCGC 2 cut(s) 6, 51
SspDI GGCGCC 1 cut(s) 58
SspMI CTAG 1 cut(s) 302
StyD4I CCNGG 1 cut(s) 316
StyI CCWWGG 1 cut(s) 84
TaiI ACGT 2 cut(s) 126, 483
TaqI TCGA 3 cut(s) 105, 110, 251
TaqII GACCGA 1 cut(s) 530
TasI AATT 3 cut(s) 220, 369, 465
TatI WGTACW 1 cut(s) 277
TfiI GAWTC 1 cut(s) 170
TscAI CASTG 2 cut(s) 69, 430
TseI GCWGC 2 cut(s) 377, 521
TspDTI ATGAA 3 cut(s) 156, 210, 429
TspRI CASTG 2 cut(s) 69, 430
XbaI TCTAGA 1 cut(s) 301
XspI CTAG 1 cut(s) 302
ZrmI AGTACT 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.