Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0000916

Physical Location & Seq

Genomic Coordinates Forward (+)

28709449 .. 28715009

Gene Structure 5561 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1237700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGTCTGCCACTTGTTCTTTGTTGAATTATTTGGTCACGAATGTCAGCTATAACTCCGATGAATTTGGGAGTTATGTTTCTTATGATGCTGTTTTCCCCGACATCTTTATCCGGTACATGCTTGATATCTCCGGGCAGTTTAGGGCCTACAAGTGGGGGAAAGACTATAATCAGTGGACTTCATTTTGGTTGCGACCCTCCGAACGTTGCGAGGTATATGGATTCGGCGGTGCTTCTAGTATTTGTAACCAGCAACAAGTGCCTCTTTGTGTATGCTTGGAAGGGTTTGAACTGCAAGCTCCAAAAGACTGGGACTTGGAGGATCACACGGAAGAGTGCGTGAGGAAAACCCTTTTAGAATGCAGTGCAAGCAGTGGAGGAAATGACACATTTGTGGTGATACCCGATTTGCGCTTCCTTGAGAATCCCGAGACTTTAGCAGGTAAGAACATCGATGAGTGTAGATCGGCGTGCTTGAGTGATTGCTCGTGTACATCGTTTGCTTATGATAATGGGTGTTTGGTTTGGAAAAGGGATTTGTTCAATGTAAAACAACTTACATCTGATGAGACAGTCGGCAAAAAGTTGCATCTTCGGGTTGCAGCATCAGAGGAACCAAAGGCAAAGAGAGAGAATAAAACCTTTTGGATTGTCATTGGAGTACTTGGAGGTTTGTGTGGTGTTTTACTGATTATTGTGGTAATTGCCAAGAATGAATGTTCCGGTTCTGGGGAAAGGTCTGAGGCAGATGAAGGCTCTTTGACAATGTTTAAGTACTGGGTTCTAAGAAACGCAACCAAGAACTTCACTGAAAAACTTGGGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

276

Amino Acids

30.9

Weight (kDa)

4.9

Isoelectric Point (pI)

45.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S_locus_glycop	PF00954	18 - 98	1e-15	S-locus glycoprotein domain
PAN_2	PF08276	125 - 183	4.2e-13	PAN-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000916)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g26420 FvH4_6g26420 FvH4_6g26450 FvH4_6g26451
malus_domestica	MD09G1116700.v1.1 MD09G1233200.v1.1 MD12G1033500.v1.1 MD14G1034400.v1.1 MD14G1034600.v1.1 MD14G1034700.v1.1 MD14G1034800.v1.1 MD14G1034900.v1.1 MD14G1035200.v1.1 MD17G1090300.v1.1 MD17G1108200.v1.1 MD17G1237700.v1.1 MD17G1237800.v1.1 MD17G1238000.v1.1 MD17G1238400.v1.1
prunus_persica	Prupe.3G131100_v2.0.a1 Prupe.3G141400_v2.0.a1
pyrus_communis	pycom09g04120 pycom12g03080 pycom14g03020 pycom14g03080 pycom14g03090 pycom17g24250
rosa_chinensis	RchiOBHm_Chr2g0127791 RchiOBHm_Chr2g0127811 RchiOBHm_Chr2g0127821 RchiOBHm_Chr2g0128001
rosa_laevigata	RLG00000002113 RLG00000018931 RLG00000018932 RLG00000018933 RLG00000018934 RLG00000023426
rosa_multiflora	Rmu_sc0000516.1_g000026 Rmu_sc0000516.1_g000045 Rmu_ssc0000093.1_g000010 Rmu_ssc0000093.1_g000016 Rmu_ssc0000093.1_g000017 Rmu_ssc0000093.1_g000024
rosa_roxburghii	Rroxscaffold_2G00116790 Rroxscaffold_2G00116800 Rroxscaffold_2G00116810 Rroxscaffold_2G00116840
rosa_rugosa	Rorug02G0270500 Rorug02G0270600 Rorug02G0270800 Rorug02G0270900 Rorug02G0271000
rosa_samantha	Rh2AG323100 Rh2BG332100 Rh2BG332200 Rh2BG332300 Rh2CG310900 Rh2CG311000 Rh2DG350400 Rh2DG350500 Rh2DG350600 Rh2DG350700
rosa_wichuraiana	Rw2G026190 Rw2G026210 Rw2G026230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	431
AciI	CCGC	1 cut(s)	228
AclI	AACGTT	1 cut(s)	205
AclWI	GGATC	1 cut(s)	330
AcsI	RAATTY	1 cut(s)	62
AfaI	GTAC	4 cut(s)	116, 493, 663, 776
AfiI	CCNNNNNNNGG	2 cut(s)	153, 729
AgsI	TTSAA	3 cut(s)	25, 290, 544
AleI	CACNNNNGTG	1 cut(s)	392
AluBI	AGCT	2 cut(s)	48, 299
AluI	AGCT	2 cut(s)	48, 299
Alw26I	GTCTC	2 cut(s)	425, 563
AlwI	GGATC	1 cut(s)	330
Ama87I	CYCGRG	1 cut(s)	428
AoxI	GGCC	1 cut(s)	144
ApeKI	GCWGC	1 cut(s)	602
ApoI	RAATTY	1 cut(s)	62
AspLEI	GCGC	1 cut(s)	414
AspS9I	GGNCC	1 cut(s)	144
AsuC2I	CCSGG	1 cut(s)	133
AsuHPI	GGTGA	1 cut(s)	409
AvaI	CYCGRG	1 cut(s)	428
BauI	CACGAG	1 cut(s)	487
BbvI	GCAGC	1 cut(s)	614
BcnI	CCSGG	1 cut(s)	133
BcoDI	GTCTC	2 cut(s)	425, 563
BfaI	CTAG	1 cut(s)	237
BfuAI	ACCTGC	1 cut(s)	431
BisI	GCNGC	1 cut(s)	603
BlsI	GCNGC	1 cut(s)	604
BmcAI	AGTACT	2 cut(s)	663, 776
Bme1390I	CCNGG	1 cut(s)	133
BmeT110I	CYCGRG	1 cut(s)	428
BmgT120I	GGNCC	1 cut(s)	144
BmiI	GGNNCC	1 cut(s)	615
BmrFI	CCNGG	1 cut(s)	133
BmrI	ACTGGG	2 cut(s)	319, 787
BmsI	GCATC	3 cut(s)	76, 598, 614
BmuI	ACTGGG	2 cut(s)	319, 787
BpuEI	CTTGAG	2 cut(s)	440, 496
BpuMI	CCSGG	1 cut(s)	133
Bsa29I	ATCGAT	1 cut(s)	453
BsaWI	WCCGGW	2 cut(s)	111, 722
Bsc4I	CCNNNNNNNGG	2 cut(s)	153, 729
Bse1I	ACTGG	2 cut(s)	314, 782
BseCI	ATCGAT	1 cut(s)	453
BseLI	CCNNNNNNNGG	2 cut(s)	153, 729
BseMII	CTCAG	1 cut(s)	732
BseNI	ACTGG	2 cut(s)	314, 782
BseXI	GCAGC	1 cut(s)	614
BshFI	GGCC	1 cut(s)	146
BshVI	ATCGAT	1 cut(s)	453
BsiHKCI	CYCGRG	1 cut(s)	428
BsiSI	CCGG	3 cut(s)	112, 132, 723
BslFI	GGGAC	1 cut(s)	326
BslI	CCNNNNNNNGG	2 cut(s)	153, 729
BsmAI	GTCTC	2 cut(s)	425, 563
BsmFI	GGGAC	1 cut(s)	326
BsmI	GAATGC	1 cut(s)	365
BsnI	GGCC	1 cut(s)	146
BsoBI	CYCGRG	1 cut(s)	428
Bsp1407I	TGTACA	1 cut(s)	491
Bsp143I	GATC	2 cut(s)	322, 464
BspACI	CCGC	1 cut(s)	228
BspANI	GGCC	1 cut(s)	146
BspCNI	CTCAG	1 cut(s)	733
BspDI	ATCGAT	1 cut(s)	453
BspLI	GGNNCC	1 cut(s)	615
BspMI	ACCTGC	1 cut(s)	431
BspPI	GGATC	1 cut(s)	330
BsrGI	TGTACA	1 cut(s)	491
BsrI	ACTGG	2 cut(s)	314, 782
BssMI	GATC	2 cut(s)	322, 464
BssSI	CACGAG	1 cut(s)	487
Bst2BI	CACGAG	1 cut(s)	487
Bst4CI	ACNGT	1 cut(s)	574
Bst6I	CTCTTC	1 cut(s)	327
BstAPI	GCANNNNNTGC	1 cut(s)	259
BstAUI	TGTACA	1 cut(s)	491
BstC8I	GCNNGC	3 cut(s)	297, 370, 472
BstDEI	CTNAG	2 cut(s)	741, 785
BstHHI	GCGC	1 cut(s)	414
BstKTI	GATC	2 cut(s)	325, 467
BstMAI	GTCTC	2 cut(s)	425, 563
BstMBI	GATC	2 cut(s)	322, 464
BstMWI	GCNNNNNNNGC	2 cut(s)	259, 369
BstNSI	RCATGY	1 cut(s)	121
BstSCI	CCNGG	1 cut(s)	131
BstV1I	GCAGC	1 cut(s)	614
BstXI	CCANNNNNNTGG	1 cut(s)	309
Bsu15I	ATCGAT	1 cut(s)	453
BsuRI	GGCC	1 cut(s)	146
BsuTUI	ATCGAT	1 cut(s)	453
BtsI	GCAGTG	2 cut(s)	370, 379
BtsIMutI	CAGTG	4 cut(s)	179, 370, 379, 807
BveI	ACCTGC	1 cut(s)	431
Cac8I	GCNNGC	3 cut(s)	297, 370, 472
CfoI	GCGC	1 cut(s)	414
Cfr13I	GGNCC	1 cut(s)	144
ClaI	ATCGAT	1 cut(s)	453
Csp6I	GTAC	4 cut(s)	115, 492, 662, 775
CviAII	CATG	1 cut(s)	118
CviJI	RGCY	4 cut(s)	48, 146, 299, 756
CviKI_1	RGCY	4 cut(s)	48, 146, 299, 756
CviQI	GTAC	4 cut(s)	115, 492, 662, 775
DdeI	CTNAG	2 cut(s)	741, 785
DpnI	GATC	2 cut(s)	324, 466
DpnII	GATC	2 cut(s)	322, 464
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Eco32I	GATATC	1 cut(s)	127
Eco88I	CYCGRG	1 cut(s)	428
EcoO109I	RGGNCCY	1 cut(s)	144
EcoRV	GATATC	1 cut(s)	127
FaeI	CATG	1 cut(s)	121
FaiI	YATR	9 cut(s)	51, 75, 84, 119, 168, 217, 219, 274, 507
FalI	AAGNNNNNCTT	2 cut(s)	249, 281
FaqI	GGGAC	1 cut(s)	326
FatI	CATG	1 cut(s)	117
Fnu4HI	GCNGC	1 cut(s)	603
Fsp4HI	GCNGC	1 cut(s)	603
FspBI	CTAG	1 cut(s)	237
GlaI	GCGC	1 cut(s)	413
GluI	GCNGC	1 cut(s)	603
HaeIII	GGCC	1 cut(s)	146
HapII	CCGG	3 cut(s)	112, 132, 723
HhaI	GCGC	1 cut(s)	414
Hin1II	CATG	1 cut(s)	121
Hin6I	GCGC	1 cut(s)	412
HinP1I	GCGC	1 cut(s)	412
HinfI	GANTC	2 cut(s)	222, 424
HpaII	CCGG	3 cut(s)	112, 132, 723
HphI	GGTGA	1 cut(s)	409
Hpy166II	GTNNAC	2 cut(s)	177, 492
Hpy188I	TCNGA	5 cut(s)	58, 202, 565, 610, 742
Hpy188III	TCNNGA	2 cut(s)	37, 428
Hpy8I	GTNNAC	2 cut(s)	177, 492
HpyAV	CCTTC	2 cut(s)	275, 746
HpyCH4III	ACNGT	1 cut(s)	574
HpyCH4IV	ACGT	1 cut(s)	205
HpyCH4V	TGCA	5 cut(s)	295, 363, 368, 589, 602
HpyF10VI	GCNNNNNNNGC	2 cut(s)	259, 369
HpyF3I	CTNAG	2 cut(s)	741, 785
HpySE526I	ACGT	1 cut(s)	205
Hsp92II	CATG	1 cut(s)	121
HspAI	GCGC	1 cut(s)	412
Kzo9I	GATC	2 cut(s)	322, 464
LmnI	GCTCC	1 cut(s)	304
LpnPI	CCDG	8 cut(s)	125, 145, 263, 295, 426, 714, 736, 763
Lsp1109I	GCAGC	1 cut(s)	614
LweI	GCATC	3 cut(s)	76, 598, 614
MaeI	CTAG	1 cut(s)	237
MaeII	ACGT	1 cut(s)	205
MaeIII	GTNAC	2 cut(s)	34, 245
MalI	GATC	2 cut(s)	324, 466
MboI	GATC	2 cut(s)	322, 464
MboII	GAAGA	2 cut(s)	344, 584
MluCI	AATT	3 cut(s)	25, 62, 702
MnlI	CCTC	9 cut(s)	205, 208, 273, 313, 336, 371, 604, 662, 736
MseI	TTAA	1 cut(s)	771
MslI	CAYNNNNRTG	1 cut(s)	392
MspI	CCGG	3 cut(s)	112, 132, 723
MspR9I	CCNGG	1 cut(s)	133
Mva1269I	GAATGC	1 cut(s)	365
MwoI	GCNNNNNNNGC	2 cut(s)	259, 369
NciI	CCSGG	1 cut(s)	133
NdeII	GATC	2 cut(s)	322, 464
NlaIII	CATG	1 cut(s)	121
NlaIV	GGNNCC	1 cut(s)	615
NmuCI	GTSAC	1 cut(s)	34
NspI	RCATGY	1 cut(s)	121
OliI	CACNNNNGTG	1 cut(s)	392
PcsI	WCGNNNNNNNCGW	1 cut(s)	494
PctI	GAATGC	1 cut(s)	365
PfeI	GAWTC	2 cut(s)	222, 424
PkrI	GCNGC	1 cut(s)	604
Psp1406I	AACGTT	1 cut(s)	205
PspN4I	GGNNCC	1 cut(s)	615
PspPI	GGNCC	1 cut(s)	144
RsaI	GTAC	4 cut(s)	116, 493, 663, 776
RsaNI	GTAC	4 cut(s)	115, 492, 662, 775
RseI	CAYNNNNRTG	1 cut(s)	392
SaqAI	TTAA	1 cut(s)	771
SatI	GCNGC	1 cut(s)	603
Sau3AI	GATC	2 cut(s)	322, 464
Sau96I	GGNCC	1 cut(s)	144
ScaI	AGTACT	2 cut(s)	663, 776
ScrFI	CCNGG	1 cut(s)	133
SetI	ASST	8 cut(s)	50, 208, 216, 301, 445, 644, 673, 740
SfaNI	GCATC	3 cut(s)	76, 598, 614
SmiMI	CAYNNNNRTG	1 cut(s)	392
SmlI	CTYRAG	2 cut(s)	419, 475
SmoI	CTYRAG	2 cut(s)	419, 475
Sse9I	AATT	3 cut(s)	25, 62, 702
SsiI	CCGC	1 cut(s)	228
SspMI	CTAG	1 cut(s)	237
StyD4I	CCNGG	1 cut(s)	131
TaaI	ACNGT	1 cut(s)	574
TaiI	ACGT	1 cut(s)	208
TaqI	TCGA	1 cut(s)	453
TasI	AATT	3 cut(s)	25, 62, 702
TatI	WGTACW	3 cut(s)	491, 661, 774
TfiI	GAWTC	2 cut(s)	222, 424
Tru1I	TTAA	1 cut(s)	771
Tru9I	TTAA	1 cut(s)	771
TscAI	CASTG	4 cut(s)	179, 370, 379, 814
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	1 cut(s)	602
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	4 cut(s)	75, 171, 729, 765
TspGWI	ACGGA	1 cut(s)	344
TspRI	CASTG	4 cut(s)	179, 370, 379, 814
XapI	RAATTY	1 cut(s)	62
XceI	RCATGY	1 cut(s)	121
XspI	CTAG	1 cut(s)	237
ZrmI	AGTACT	2 cut(s)	663, 776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.