RLG00000002113

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000916
Physical Location & Seq
Forward (+)
25654722 .. 25655222
501 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002113

Sequence Viewer

Length: 384 bp
ATGACAAGCCCAGCCCAATCTCCACCTGTTTCGGGTCGCCGCCGTCATCAGCGCTCCCCCAGCCTCGCAACCGAAGACCAGCGACTTCCGGCCGGCCCCACGACAACATCCTCATTCGCGGACACCCCCTCCCCCAAAGAGTACCAGACCACCGGTCGTCATCCGCCGCAATCTCCTCGACCACTTCTGTCGAATCCCAGCGATCCACCGCCGGCCCATTGCATCACCTCAATCAACGAATCCAGAGACATTGATAGGAGTTGGGTACTCTTCGTGCCCCAAAACTCCGCCGTCGGCCGCTCATCTTCCAAGCCGCGTCTCACCTTGGTCGATCCTCCCCCTCCATCCTCGATTGCGAGAGCATCTGCAGAGCACGCGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

13.65

Weight (kDa)

10.22

Isoelectric Point (pI)

89.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 300
AccII CGCG 3 cut(s) 119, 316, 377
AciI CCGC 9 cut(s) 40, 119, 164, 167, 209, 288, 298, 314, 377
AclWI GGATC 2 cut(s) 197, 326
AcoI YGGCCR 2 cut(s) 90, 295
AfaI GTAC 2 cut(s) 143, 267
AfeI AGCGCT 1 cut(s) 53
AfiI CCNNNNNNNGG 1 cut(s) 32
AgeI ACCGGT 1 cut(s) 152
AhdI GACNNNNNGTC 1 cut(s) 153
Alw21I GWGCWC 1 cut(s) 375
Alw26I GTCTC 2 cut(s) 240, 323
AlwI GGATC 2 cut(s) 197, 326
Aor51HI AGCGCT 1 cut(s) 53
AoxI GGCC 4 cut(s) 90, 94, 213, 295
AsiGI ACCGGT 1 cut(s) 152
AspLEI GCGC 1 cut(s) 54
AspS9I GGNCC 2 cut(s) 95, 214
AsuHPI GGTGA 2 cut(s) 217, 313
BaeGI GKGCMC 1 cut(s) 279
BbsI GAAGAC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 375
BccI CCATC 1 cut(s) 352
BceAI ACGGC 2 cut(s) 27, 275
BcgI CGANNNNNNTGC 2 cut(s) 158, 192
BcoDI GTCTC 2 cut(s) 240, 323
BfmI CTRYAG 1 cut(s) 366
BfoI RGCGCY 1 cut(s) 55
BisI GCNGC 4 cut(s) 40, 167, 298, 314
BlsI GCNGC 4 cut(s) 41, 168, 299, 315
BmeRI GACNNNNNGTC 1 cut(s) 153
BmgT120I GGNCC 2 cut(s) 95, 214
BmiI GGNNCC 1 cut(s) 97
BmsI GCATC 2 cut(s) 231, 371
BpiI GAAGAC 1 cut(s) 81
BsaJI CCNNGG 1 cut(s) 324
BsaWI WCCGGW 1 cut(s) 152
BsaXI ACNNNNNCTCC 2 cut(s) 113, 143
Bsc4I CCNNNNNNNGG 1 cut(s) 32
Bse118I RCCGGY 3 cut(s) 92, 152, 211
Bse3DI GCAATG 1 cut(s) 217
BseDI CCNNGG 1 cut(s) 324
BseGI GGATG 3 cut(s) 107, 160, 344
BseLI CCNNNNNNNGG 1 cut(s) 32
BseMI GCAATG 1 cut(s) 217
BseRI GAGGAG 1 cut(s) 165
BseSI GKGCMC 1 cut(s) 279
BseX3I CGGCCG 2 cut(s) 90, 295
BseYI CCCAGC 3 cut(s) 10, 59, 197
Bsh1236I CGCG 3 cut(s) 119, 316, 377
Bsh1285I CGRYCG 3 cut(s) 93, 157, 298
BshFI GGCC 4 cut(s) 92, 96, 215, 297
BshTI ACCGGT 1 cut(s) 152
BsiEI CGRYCG 3 cut(s) 93, 157, 298
BsiHKAI GWGCWC 1 cut(s) 375
BsiSI CCGG 4 cut(s) 89, 93, 153, 212
BslI CCNNNNNNNGG 1 cut(s) 32
BsmAI GTCTC 2 cut(s) 240, 323
BsmBI CGTCTC 1 cut(s) 323
BsnI GGCC 4 cut(s) 92, 96, 215, 297
Bsp1286I GDGCHC 2 cut(s) 279, 375
Bsp143I GATC 2 cut(s) 202, 331
BspACI CCGC 9 cut(s) 40, 119, 164, 167, 209, 288, 298, 314, 377
BspANI GGCC 4 cut(s) 92, 96, 215, 297
BspFNI CGCG 3 cut(s) 119, 316, 377
BspLI GGNNCC 1 cut(s) 97
BspMAI CTGCAG 1 cut(s) 370
BspPI GGATC 2 cut(s) 197, 326
BsrBI CCGCTC 1 cut(s) 300
BsrDI GCAATG 1 cut(s) 217
BsrFI RCCGGY 3 cut(s) 92, 152, 211
BssAI RCCGGY 3 cut(s) 92, 152, 211
BssECI CCNNGG 1 cut(s) 324
BssMI GATC 2 cut(s) 202, 331
BssT1I CCWWGG 1 cut(s) 324
Bst6I CTCTTC 1 cut(s) 275
BstC8I GCNNGC 3 cut(s) 94, 213, 375
BstF5I GGATG 3 cut(s) 107, 160, 344
BstFNI CGCG 3 cut(s) 119, 316, 377
BstH2I RGCGCY 1 cut(s) 55
BstHHI GCGC 1 cut(s) 54
BstKTI GATC 2 cut(s) 205, 334
BstMAI GTCTC 2 cut(s) 240, 323
BstMBI GATC 2 cut(s) 202, 331
BstMCI CGRYCG 3 cut(s) 93, 157, 298
BstMWI GCNNNNNNNGC 2 cut(s) 60, 374
BstSFI CTRYAG 1 cut(s) 366
BstSLI GKGCMC 1 cut(s) 279
BstUI CGCG 3 cut(s) 119, 316, 377
BstV2I GAAGAC 1 cut(s) 81
BstZI CGGCCG 2 cut(s) 90, 295
BsuRI GGCC 4 cut(s) 92, 96, 215, 297
BtsCI GGATG 3 cut(s) 107, 160, 344
Cac8I GCNNGC 3 cut(s) 94, 213, 375
CfoI GCGC 1 cut(s) 54
Cfr10I RCCGGY 3 cut(s) 92, 152, 211
Cfr13I GGNCC 2 cut(s) 95, 214
CseI GACGC 1 cut(s) 305
Csp6I GTAC 2 cut(s) 142, 266
CspAI ACCGGT 1 cut(s) 152
CviJI RGCY 8 cut(s) 9, 14, 63, 92, 96, 215, 297, 313
CviKI_1 RGCY 8 cut(s) 9, 14, 63, 92, 96, 215, 297, 313
CviQI GTAC 2 cut(s) 142, 266
DpnI GATC 2 cut(s) 204, 333
DpnII GATC 2 cut(s) 202, 331
DriI GACNNNNNGTC 1 cut(s) 153
EaeI YGGCCR 2 cut(s) 90, 295
EagI CGGCCG 2 cut(s) 90, 295
Eam1104I CTCTTC 1 cut(s) 275
Eam1105I GACNNNNNGTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 275
EciI GGCGGA 2 cut(s) 153, 277
EclXI CGGCCG 2 cut(s) 90, 295
Eco130I CCWWGG 1 cut(s) 324
Eco47III AGCGCT 1 cut(s) 53
Eco52I CGGCCG 2 cut(s) 90, 295
EcoT14I CCWWGG 1 cut(s) 324
ErhI CCWWGG 1 cut(s) 324
Esp3I CGTCTC 1 cut(s) 323
Fnu4HI GCNGC 4 cut(s) 40, 167, 298, 314
FokI GGATG 3 cut(s) 94, 147, 331
FseI GGCCGGCC 1 cut(s) 96
Fsp4HI GCNGC 4 cut(s) 40, 167, 298, 314
GlaI GCGC 1 cut(s) 53
GluI GCNGC 4 cut(s) 40, 167, 298, 314
GsaI CCCAGC 3 cut(s) 14, 63, 201
HaeII RGCGCY 1 cut(s) 55
HaeIII GGCC 4 cut(s) 92, 96, 215, 297
HapII CCGG 4 cut(s) 89, 93, 153, 212
HgaI GACGC 1 cut(s) 305
HhaI GCGC 1 cut(s) 54
Hin6I GCGC 1 cut(s) 52
HinP1I GCGC 1 cut(s) 52
HinfI GANTC 2 cut(s) 193, 239
HpaII CCGG 4 cut(s) 89, 93, 153, 212
HphI GGTGA 2 cut(s) 217, 313
Hpy188I TCNGA 1 cut(s) 383
Hpy188III TCNNGA 1 cut(s) 243
Hpy99I CGWCG 1 cut(s) 296
HpyCH4V TGCA 2 cut(s) 222, 368
HpyF10VI GCNNNNNNNGC 2 cut(s) 60, 374
HspAI GCGC 1 cut(s) 52
KroI GCCGGC 2 cut(s) 92, 211
KroNI GCCGGC 2 cut(s) 94, 213
Kzo9I GATC 2 cut(s) 202, 331
LmnI GCTCC 1 cut(s) 59
LweI GCATC 2 cut(s) 231, 371
MalI GATC 2 cut(s) 204, 333
MbiI CCGCTC 1 cut(s) 300
MboI GATC 2 cut(s) 202, 331
MboII GAAGA 3 cut(s) 86, 262, 297
MhlI GDGCHC 2 cut(s) 279, 375
MnlI CCTC 8 cut(s) 74, 121, 139, 186, 238, 345, 351, 358
MroNI GCCGGC 2 cut(s) 92, 211
MspI CCGG 4 cut(s) 89, 93, 153, 212
MvnI CGCG 3 cut(s) 119, 316, 377
MwoI GCNNNNNNNGC 2 cut(s) 60, 374
NaeI GCCGGC 2 cut(s) 94, 213
NdeII GATC 2 cut(s) 202, 331
NgoMIV GCCGGC 2 cut(s) 92, 211
NlaIV GGNNCC 1 cut(s) 97
PdiI GCCGGC 2 cut(s) 94, 213
PfeI GAWTC 2 cut(s) 193, 239
PinAI ACCGGT 1 cut(s) 152
PkrI GCNGC 4 cut(s) 41, 168, 299, 315
PspFI CCCAGC 3 cut(s) 10, 59, 197
PspN4I GGNNCC 1 cut(s) 97
PspPI GGNCC 2 cut(s) 95, 214
PstI CTGCAG 1 cut(s) 370
RigI GGCCGGCC 1 cut(s) 96
RsaI GTAC 2 cut(s) 143, 267
RsaNI GTAC 2 cut(s) 142, 266
SatI GCNGC 4 cut(s) 40, 167, 298, 314
Sau3AI GATC 2 cut(s) 202, 331
Sau96I GGNCC 2 cut(s) 95, 214
SduI GDGCHC 2 cut(s) 279, 375
SetI ASST 3 cut(s) 28, 230, 326
SfaNI GCATC 2 cut(s) 231, 371
SfcI CTRYAG 1 cut(s) 366
SsiI CCGC 9 cut(s) 40, 119, 164, 167, 209, 288, 298, 314, 377
StyI CCWWGG 1 cut(s) 324
TaqI TCGA 4 cut(s) 178, 191, 330, 350
TauI GCSGC 4 cut(s) 42, 169, 300, 316
TfiI GAWTC 2 cut(s) 193, 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.