RchiOBHm_Chr2g0127811

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000916
Physical Location & Seq
Forward (+)
42651956 .. 42652920
965 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49965

Sequence Viewer

Length: 765 bp
ATGGATAATGTTACTTACCCGAAGAGTCCCAACTCCTTGGTAGTTGATAACATTGACAAATGTAGATTAGCTTGCTTGAGAAATTGCTCATGCACTGCTTTTGCTTATGATAATCAGTGTCTGATTTTGGGAGGTGATCTAGTTAATGTAAAGCAACTATCATCTGATGGAATGATAGGAAAAGTTTGGTATCTACGAGTAGCAGCATCTAAGAAGGATCAAATAATAGATTCTGGGAGTAGAAAGAGGAAGACTACTTGGATTGTGGTTGGAGTACTTGCAGGCATCGTTACTCTCTTTAGCATTGTGCTGGATGAAAAGCAATTTCAGGCTGAAGTGAGAACTCTTGGGGCGATCCAACACATTAATCTTGTTCACCTACGTGGGTTTTGTGCAGATTCTACAAGGCTCTTAGTTTATGACTATGTGCCAAATGGCTCTCTACAATCTGTTCTAGTTCAAAACCATCCACTAATCTTGGATTGGAAAGCAAGATATCATATTGCTATAGGCATTGCGAGAGGATTGGCTTACTTCCATGAGGACTGTAGAGATTGTGTAATACACTATGACATTAAGCCAAAGAACATTTTATTGGATGAAGAATATAGTCCAAAAGTTGCAGATTTTGGTCTTGCAAAACTCATTGGCAGACACCATAGTCTAGTTCTGACAACTGGGAGAGGGACTGGTGGATATCTAGCACCAGAATGGCTTACAGGTGAAGCCATCACTCCAAAACCTGATGTCTTCAGCTACCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase S_locus_glycop

Protein Analysis

254

Amino Acids

28.3

Weight (kDa)

8.36

Isoelectric Point (pI)

38.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAN_2 PF08276 2 - 50 5.3e-10 PAN-like domain
Pkinase PF00069 106 - 253 1.2e-30 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 106 - 253 7.6e-25 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 660
AclWI GGATC 2 cut(s) 225, 349
AcuI CTGAAG 2 cut(s) 354, 736
AfaI GTAC 1 cut(s) 276
AgsI TTSAA 1 cut(s) 461
AjuI GAANNNNNNNTTGG 2 cut(s) 578, 610
AleI CACNNNNGTG 1 cut(s) 381
AluBI AGCT 2 cut(s) 71, 756
AluI AGCT 2 cut(s) 71, 756
AlwI GGATC 2 cut(s) 225, 349
AlwNI CAGNNNCTG 1 cut(s) 121
ApeKI GCWGC 1 cut(s) 203
AseI ATTAAT 1 cut(s) 366
AsuHPI GGTGA 3 cut(s) 146, 368, 734
BbsI GAAGAC 2 cut(s) 257, 742
BbvI GCAGC 1 cut(s) 215
BccI CCATC 3 cut(s) 161, 474, 737
BfaI CTAG 4 cut(s) 140, 455, 665, 701
BfmI CTRYAG 2 cut(s) 507, 547
BisI GCNGC 1 cut(s) 204
BlsI GCNGC 1 cut(s) 205
BmcAI AGTACT 1 cut(s) 276
BmrI ACTGGG 1 cut(s) 687
BmsI GCATC 2 cut(s) 215, 294
BmuI ACTGGG 1 cut(s) 687
BpiI GAAGAC 2 cut(s) 257, 742
BpuEI CTTGAG 1 cut(s) 97
BsaAI YACGTR 1 cut(s) 383
BsaJI CCNNGG 1 cut(s) 36
Bse1I ACTGG 2 cut(s) 682, 694
Bse3DI GCAATG 1 cut(s) 513
BseDI CCNNGG 1 cut(s) 36
BseGI GGATG 3 cut(s) 319, 466, 604
BseMI GCAATG 1 cut(s) 513
BseNI ACTGG 2 cut(s) 682, 694
BseXI GCAGC 1 cut(s) 215
BsgI GTGCAG 1 cut(s) 414
BslFI GGGAC 2 cut(s) 12, 700
BsmFI GGGAC 2 cut(s) 12, 700
Bsp143I GATC 3 cut(s) 136, 217, 354
BspPI GGATC 2 cut(s) 225, 349
BsrDI GCAATG 1 cut(s) 513
BsrI ACTGG 2 cut(s) 682, 694
BssECI CCNNGG 1 cut(s) 36
BssMI GATC 3 cut(s) 136, 217, 354
BssT1I CCWWGG 1 cut(s) 36
Bst4CI ACNGT 1 cut(s) 548
Bst6I CTCTTC 1 cut(s) 17
BstBAI YACGTR 1 cut(s) 383
BstC8I GCNNGC 2 cut(s) 73, 283
BstDEI CTNAG 2 cut(s) 210, 412
BstF5I GGATG 3 cut(s) 319, 466, 604
BstKTI GATC 3 cut(s) 139, 220, 357
BstMBI GATC 3 cut(s) 136, 217, 354
BstSFI CTRYAG 2 cut(s) 507, 547
BstV1I GCAGC 1 cut(s) 215
BstV2I GAAGAC 2 cut(s) 257, 742
BstXI CCANNNNNNTGG 1 cut(s) 37
BtsCI GGATG 3 cut(s) 319, 466, 604
BtsI GCAGTG 1 cut(s) 93
BtsIMutI CAGTG 2 cut(s) 93, 122
Cac8I GCNNGC 2 cut(s) 73, 283
CaiI CAGNNNCTG 1 cut(s) 121
Csp6I GTAC 1 cut(s) 275
CspCI CAANNNNNGTGG 2 cut(s) 459, 494
CviAII CATG 2 cut(s) 90, 539
CviJI RGCY 9 cut(s) 71, 332, 409, 438, 530, 580, 715, 728, 756
CviKI_1 RGCY 9 cut(s) 71, 332, 409, 438, 530, 580, 715, 728, 756
CviQI GTAC 1 cut(s) 275
DdeI CTNAG 2 cut(s) 210, 412
DpnI GATC 3 cut(s) 138, 219, 356
DpnII GATC 3 cut(s) 136, 217, 354
DrdI GACNNNNNNGTC 1 cut(s) 660
DseDI GACNNNNNNGTC 1 cut(s) 660
Eam1104I CTCTTC 1 cut(s) 17
EarI CTCTTC 1 cut(s) 17
Eco130I CCWWGG 1 cut(s) 36
Eco32I GATATC 2 cut(s) 497, 698
Eco57I CTGAAG 2 cut(s) 354, 736
EcoRV GATATC 2 cut(s) 497, 698
EcoT14I CCWWGG 1 cut(s) 36
ErhI CCWWGG 1 cut(s) 36
FaeI CATG 2 cut(s) 93, 542
FaqI GGGAC 2 cut(s) 12, 700
FatI CATG 2 cut(s) 89, 538
Fnu4HI GCNGC 1 cut(s) 204
FokI GGATG 3 cut(s) 326, 453, 611
Fsp4HI GCNGC 1 cut(s) 204
FspBI CTAG 4 cut(s) 140, 455, 665, 701
GluI GCNGC 1 cut(s) 204
Hin1II CATG 2 cut(s) 93, 542
HinfI GANTC 3 cut(s) 25, 230, 398
HphI GGTGA 3 cut(s) 146, 368, 734
Hpy166II GTNNAC 1 cut(s) 376
Hpy188I TCNGA 3 cut(s) 123, 166, 672
Hpy8I GTNNAC 1 cut(s) 376
HpyAV CCTTC 1 cut(s) 208
HpyCH4III ACNGT 1 cut(s) 548
HpyCH4IV ACGT 1 cut(s) 382
HpyCH4V TGCA 5 cut(s) 93, 281, 395, 623, 638
HpyF3I CTNAG 2 cut(s) 210, 412
HpySE526I ACGT 1 cut(s) 382
Hsp92II CATG 2 cut(s) 93, 542
Kzo9I GATC 3 cut(s) 136, 217, 354
LpnPI CCDG 9 cut(s) 219, 267, 296, 314, 663, 675, 705, 720, 756
Lsp1109I GCAGC 1 cut(s) 215
LweI GCATC 2 cut(s) 215, 294
MaeI CTAG 4 cut(s) 140, 455, 665, 701
MaeII ACGT 1 cut(s) 382
MaeIII GTNAC 2 cut(s) 10, 289
MalI GATC 3 cut(s) 138, 219, 356
MboI GATC 3 cut(s) 136, 217, 354
MboII GAAGA 4 cut(s) 34, 262, 614, 742
MluCI AATT 2 cut(s) 82, 323
MlyI GAGTC 1 cut(s) 34
MmeI TCCRAC 2 cut(s) 250, 382
MnlI CCTC 5 cut(s) 125, 240, 515, 535, 677
MseI TTAA 4 cut(s) 144, 366, 576, 763
MslI CAYNNNNRTG 2 cut(s) 381, 709
NdeII GATC 3 cut(s) 136, 217, 354
NlaIII CATG 2 cut(s) 93, 542
OliI CACNNNNGTG 1 cut(s) 381
PfeI GAWTC 2 cut(s) 230, 398
PkrI GCNGC 1 cut(s) 205
PleI GAGTC 1 cut(s) 33
PpsI GAGTC 1 cut(s) 33
Ppu21I YACGTR 1 cut(s) 383
PshBI ATTAAT 1 cut(s) 366
PstNI CAGNNNCTG 1 cut(s) 121
RsaI GTAC 1 cut(s) 276
RsaNI GTAC 1 cut(s) 275
RseI CAYNNNNRTG 2 cut(s) 381, 709
SaqAI TTAA 4 cut(s) 144, 366, 576, 763
SatI GCNGC 1 cut(s) 204
Sau3AI GATC 3 cut(s) 136, 217, 354
ScaI AGTACT 1 cut(s) 276
SchI GAGTC 1 cut(s) 34
SetI ASST 7 cut(s) 73, 136, 381, 385, 724, 745, 758
SfaNI GCATC 2 cut(s) 215, 294
SfcI CTRYAG 2 cut(s) 507, 547
SmiMI CAYNNNNRTG 2 cut(s) 381, 709
SmlI CTYRAG 1 cut(s) 76
SmoI CTYRAG 1 cut(s) 76
Sse9I AATT 2 cut(s) 82, 323
SspMI CTAG 4 cut(s) 140, 455, 665, 701
StyI CCWWGG 1 cut(s) 36
TaaI ACNGT 1 cut(s) 548
TaiI ACGT 1 cut(s) 385
TasI AATT 2 cut(s) 82, 323
TatI WGTACW 1 cut(s) 274
TfiI GAWTC 2 cut(s) 230, 398
Tru1I TTAA 4 cut(s) 144, 366, 576, 763
Tru9I TTAA 4 cut(s) 144, 366, 576, 763
TscAI CASTG 2 cut(s) 100, 122
TseI GCWGC 1 cut(s) 203
TspDTI ATGAA 2 cut(s) 330, 615
TspRI CASTG 2 cut(s) 100, 122
VspI ATTAAT 1 cut(s) 366
XspI CTAG 4 cut(s) 140, 455, 665, 701
ZrmI AGTACT 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.