Rorug02G0270600

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000916
Physical Location & Seq
Forward (+)
28687157 .. 28691039
3883 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0270600.1

Sequence Viewer

Length: 1698 bp
ATGCTGGAAAATTCAACTTTACCGGCCAATCCAAGCTCGCCCGCAAGCGACCGGAGAGCCGAGGAGGTCGCCGGCGATGGTGGGTCCGTCTCAGTTGGGCTTGAGGAGGAAGAGAGAGCCGGACTTGAACAGGGTTACCGGAACTGGGCCGGTAACCGGTGGCCTCGGCAGGAGACTCTGGCTCTGCTCAAGATAAGGTCAGATATGGACGCGGAGTTCAAGGCAGCCACCGCTAAAATGCCTCTCTGGGAAGAGGTTTCAAGGAAAATGGGAGAGGCTGGATATAGCAGAGATGCCAAAAAATGCAAGGAGAAATTCGAGAACATATACAAGTACCACAAAAGGACTAGAGAAACGCGGTGTGGTCGATCAGCTGGCAAGACGTACAAGTATTTTGAGCAGTTAGAGGCTATAGAGCAACACCATTTTGAACATCTTCCCCCTGCTGAAACGGTTCAAGCTGAAACAGCGGAAACAGCAGCAACAATCCCAAAGGATGGTGTTTCCCATGCAATCCCCCCGTGTTCTTCAATTCAACACCAGCTTTCGAGTTTTGTTGATAACTCGACTCCCACCACATCATGTTCAAGCAAAGAGTCTGAAGGCACGCACAAGAAGAAGAGGAGGGTAACTGAGTTCTTTGAGAAGTTGATGAAGCAAGTGATCGACAAGCAAGAGAATTTGCAGACCAAGTTTGTAGAGGTGATGGACAAGTATGAACAAGATCGGGTAGCGAGAGAAGAGGCGTGGAAGATGCAAGAAATGGCTAGAATTGAGAGAGAGAGAGAGCAGCTAGCTCAAGAGAGGTCTGTTGCAGCTGCAAAGGATGCTGCTGTTCTTGCATTTTTGCAAAAGTTTTCAGAACAAGCAGCCTCAGTGCATATGCCACCAGGCCAAGCATGCTCAGTTCAAATTCCAAATCAACCGTCCTCGGTGCAACTGCCCATGCAAGCATGCTCAGTGCAATTACCAAATCAATCATCTTCTGTGCAACTGCCGGTGCAAGCATCTGCAGTCCGAGTTCAAATGCCTGATAACTCACCTTTGGCTAACACAGTAACTGACAAGCAGAAAAAGGATGAAGATTGGGAGCGTCTGCATAGGAGTTTGGAAAGGCCAGACAAGAATAATGGTGGAAGTCATACGCCTATTGGTTCTACACGGTGGCCTAGAGAAGAAGTTGAAGATTTGATTAAGCTGAGATCTAATTATGATTTGCAGTATCAAGAAAATGGATCTAAAGGGCATTTGTGGGAGGAGATTTCAGCATCCATGAAAAAGCTTGGTTATGACCGGAATGCCAAGAGGTGCAAGGAGAAGTGGGAGAACATAAACAAGTACTACAGAAGATTAAAAGATAGCAACAAGAAAAGGTCTGAGGATTCAAAGACATGTGCTTATTATAATGTGCTTGATGCTTTGTACAACAAGAAGACTAGTAAGGCTGAGAATCAAGTTGATTCTAATTATGAATTGAGGCCTGAGGAGCTATTGATGCATATGATGAGTGGGCAAGAAGAGCAGCAACAGCCGGAATCAGTGACTCAGAATGGTGATAGTGACAATGTTGAGAAGATTCAAGAAGATAATGGAAGTGGAGAGGGAGTGGGAGATGTAGCTGGAGATGGCTATCGGATTGTAGCTGCTAATCCTTCTCCAATGGAACAAGATAATCCTTCAGTGGCAATTATGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase S_locus_glycop

Protein Analysis

565

Amino Acids

63.98

Weight (kDa)

5.82

Isoelectric Point (pI)

63.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 52 - 138 5.6e-21 Myb/SANT-like DNA-binding domain
Myb_DNA-bind_4 PF13837 387 - 474 3.4e-23 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1404
AccB7I CCANNNNNTGG 1 cut(s) 497
AccII CGCG 2 cut(s) 212, 358
AciI CCGC 5 cut(s) 42, 212, 231, 358, 470
AclWI GGATC 1 cut(s) 1243
AcoI YGGCCR 1 cut(s) 24
AcsI RAATTY 4 cut(s) 10, 314, 679, 912
AcuI CTGAAG 2 cut(s) 621, 1662
AfaI GTAC 4 cut(s) 335, 386, 1340, 1424
AfiI CCNNNNNNNGG 3 cut(s) 145, 156, 497
AflIII ACRYGT 1 cut(s) 1391
AgeI ACCGGT 1 cut(s) 156
AhlI ACTAGT 1 cut(s) 1436
AjnI CCWGG 1 cut(s) 889
AloI GAACNNNNNNTCC 2 cut(s) 200, 232
Alw26I GTCTC 2 cut(s) 94, 167
AlwI GGATC 1 cut(s) 1243
AlwNI CAGNNNCTG 1 cut(s) 1061
AoxI GGCC 7 cut(s) 24, 147, 161, 892, 1115, 1166, 1478
ApeKI GCWGC 9 cut(s) 224, 479, 790, 815, 818, 830, 869, 1522, 1643
ApoI RAATTY 4 cut(s) 10, 314, 679, 912
ArsI GACNNNNNNTTYG 2 cut(s) 911, 943
AsiGI ACCGGT 1 cut(s) 156
Asp700I GAANNNNTTC 2 cut(s) 435, 453
AspS9I GGNCC 2 cut(s) 84, 147
AsuHPI GGTGA 3 cut(s) 715, 1032, 1565
AsuNHI GCTAGC 1 cut(s) 793
AvaII GGWCC 1 cut(s) 84
AxyI CCTNAGG 1 cut(s) 1482
BbsI GAAGAC 1 cut(s) 1439
BbvI GCAGC 9 cut(s) 236, 491, 802, 805, 817, 827, 881, 1534, 1630
BccI CCATC 4 cut(s) 71, 491, 700, 1619
BciT130I CCWGG 1 cut(s) 891
BcoDI GTCTC 2 cut(s) 94, 167
BcuI ACTAGT 1 cut(s) 1436
BfaI CTAG 5 cut(s) 348, 768, 794, 1170, 1437
BfmI CTRYAG 3 cut(s) 411, 1011, 1342
BglII AGATCT 1 cut(s) 1202
BisI GCNGC 9 cut(s) 225, 480, 791, 816, 819, 831, 870, 1523, 1644
BlsI GCNGC 9 cut(s) 226, 481, 792, 817, 820, 832, 871, 1524, 1645
BmcAI AGTACT 1 cut(s) 1340
Bme1390I CCNGG 1 cut(s) 891
Bme18I GGWCC 1 cut(s) 84
BmgT120I GGNCC 2 cut(s) 84, 147
BmiI GGNNCC 1 cut(s) 85
BmrFI CCNGG 1 cut(s) 891
BmrI ACTGGG 1 cut(s) 154
BmsI GCATC 7 cut(s) 283, 744, 817, 1016, 1277, 1405, 1485
BmtI GCTAGC 1 cut(s) 797
BmuI ACTGGG 1 cut(s) 154
BpiI GAAGAC 1 cut(s) 1439
BpmI CTGGAG 1 cut(s) 1641
BpuEI CTTGAG 3 cut(s) 122, 173, 783
BsaBI GATNNNNATC 1 cut(s) 1629
BsaJI CCNNGG 3 cut(s) 60, 164, 930
BsaWI WCCGGW 4 cut(s) 51, 138, 156, 1293
BsaXI ACNNNNNCTCC 2 cut(s) 1590, 1620
Bsc4I CCNNNNNNNGG 3 cut(s) 145, 156, 497
Bse118I RCCGGY 5 cut(s) 22, 71, 149, 156, 997
Bse1I ACTGG 1 cut(s) 149
Bse21I CCTNAGG 1 cut(s) 1482
Bse8I GATNNNNATC 1 cut(s) 1629
BseBI CCWGG 1 cut(s) 891
BseDI CCNNGG 3 cut(s) 60, 164, 930
BseGI GGATG 4 cut(s) 502, 832, 1084, 1268
BseJI GATNNNNATC 1 cut(s) 1629
BseLI CCNNNNNNNGG 3 cut(s) 145, 156, 497
BseNI ACTGG 1 cut(s) 149
BseRI GAGGAG 5 cut(s) 77, 119, 637, 1271, 1499
BseXI GCAGC 9 cut(s) 236, 491, 802, 805, 817, 827, 881, 1534, 1630
Bsh1236I CGCG 2 cut(s) 212, 358
Bsh1285I CGRYCG 1 cut(s) 52
BshFI GGCC 7 cut(s) 26, 149, 163, 894, 1117, 1168, 1480
BshTI ACCGGT 1 cut(s) 156
BsiEI CGRYCG 1 cut(s) 52
BslI CCNNNNNNNGG 3 cut(s) 145, 156, 497
BsmAI GTCTC 2 cut(s) 94, 167
BsmBI CGTCTC 1 cut(s) 94
BsmI GAATGC 1 cut(s) 1303
BsnI GGCC 7 cut(s) 26, 149, 163, 894, 1117, 1168, 1480
Bsp1407I TGTACA 1 cut(s) 1422
Bsp143I GATC 5 cut(s) 368, 663, 724, 1202, 1235
BspACI CCGC 5 cut(s) 42, 212, 231, 358, 470
BspANI GGCC 7 cut(s) 26, 149, 163, 894, 1117, 1168, 1480
BspFNI CGCG 2 cut(s) 212, 358
BspLI GGNNCC 1 cut(s) 85
BspMAI CTGCAG 1 cut(s) 1015
BspOI GCTAGC 1 cut(s) 797
BspPI GGATC 1 cut(s) 1243
BspQI GCTCTTC 1 cut(s) 1512
BsrFI RCCGGY 5 cut(s) 22, 71, 149, 156, 997
BsrGI TGTACA 1 cut(s) 1422
BsrI ACTGG 1 cut(s) 149
BssAI RCCGGY 5 cut(s) 22, 71, 149, 156, 997
BssECI CCNNGG 3 cut(s) 60, 164, 930
BssMI GATC 5 cut(s) 368, 663, 724, 1202, 1235
Bst2UI CCWGG 1 cut(s) 891
Bst4CI ACNGT 4 cut(s) 454, 927, 1057, 1164
Bst6I CTCTTC 5 cut(s) 105, 246, 614, 735, 1512
BstAPI GCANNNNNTGC 1 cut(s) 827
BstAUI TGTACA 1 cut(s) 1422
BstEII GGTNACC 2 cut(s) 134, 152
BstF5I GGATG 4 cut(s) 502, 832, 1084, 1268
BstFNI CGCG 2 cut(s) 212, 358
BstKTI GATC 5 cut(s) 371, 666, 727, 1205, 1238
BstMAI GTCTC 2 cut(s) 94, 167
BstMBI GATC 5 cut(s) 368, 663, 724, 1202, 1235
BstMCI CGRYCG 1 cut(s) 52
BstNI CCWGG 1 cut(s) 891
BstNSI RCATGY 3 cut(s) 903, 957, 1395
BstPI GGTNACC 2 cut(s) 134, 152
BstSCI CCNGG 1 cut(s) 889
BstSFI CTRYAG 3 cut(s) 411, 1011, 1342
BstUI CGCG 2 cut(s) 212, 358
BstV1I GCAGC 9 cut(s) 236, 491, 802, 805, 817, 827, 881, 1534, 1630
BstV2I GAAGAC 1 cut(s) 1439
BstX2I RGATCY 2 cut(s) 1202, 1235
BstYI RGATCY 2 cut(s) 1202, 1235
Bsu36I CCTNAGG 1 cut(s) 1482
BsuRI GGCC 7 cut(s) 26, 149, 163, 894, 1117, 1168, 1480
BtgZI GCGATG 1 cut(s) 90
BtsCI GGATG 4 cut(s) 502, 832, 1084, 1268
BtsIMutI CAGTG 4 cut(s) 882, 966, 1545, 1686
CaiI CAGNNNCTG 1 cut(s) 1061
Cfr10I RCCGGY 5 cut(s) 22, 71, 149, 156, 997
Cfr13I GGNCC 2 cut(s) 84, 147
CseI GACGC 2 cut(s) 218, 1082
Csp6I GTAC 4 cut(s) 334, 385, 1339, 1423
CspAI ACCGGT 1 cut(s) 156
CviAII CATG 7 cut(s) 509, 582, 900, 946, 954, 1273, 1392
CviQI GTAC 4 cut(s) 334, 385, 1339, 1423
DpnI GATC 5 cut(s) 370, 665, 726, 1204, 1237
DpnII GATC 5 cut(s) 368, 663, 724, 1202, 1235
EaeI YGGCCR 1 cut(s) 24
Eam1104I CTCTTC 5 cut(s) 105, 246, 614, 735, 1512
EarI CTCTTC 5 cut(s) 105, 246, 614, 735, 1512
Eco147I AGGCCT 1 cut(s) 1480
Eco47I GGWCC 1 cut(s) 84
Eco57I CTGAAG 2 cut(s) 621, 1662
Eco81I CCTNAGG 1 cut(s) 1482
Eco91I GGTNACC 2 cut(s) 134, 152
EcoO65I GGTNACC 2 cut(s) 134, 152
EcoRII CCWGG 1 cut(s) 889
EcoT22I ATGCAT 1 cut(s) 1500
Esp3I CGTCTC 1 cut(s) 94
FaeI CATG 7 cut(s) 512, 585, 903, 949, 957, 1276, 1395
FatI CATG 7 cut(s) 508, 581, 899, 945, 953, 1272, 1391
FauI CCCGC 1 cut(s) 49
FauNDI CATATG 2 cut(s) 882, 1500
Fnu4HI GCNGC 9 cut(s) 225, 480, 791, 816, 819, 831, 870, 1523, 1644
FokI GGATG 4 cut(s) 509, 839, 1091, 1255
Fsp4HI GCNGC 9 cut(s) 225, 480, 791, 816, 819, 831, 870, 1523, 1644
FspBI CTAG 5 cut(s) 348, 768, 794, 1170, 1437
GluI GCNGC 9 cut(s) 225, 480, 791, 816, 819, 831, 870, 1523, 1644
GsuI CTGGAG 1 cut(s) 1641
HaeIII GGCC 7 cut(s) 26, 149, 163, 894, 1117, 1168, 1480
HgaI GACGC 2 cut(s) 218, 1082
Hin1II CATG 7 cut(s) 512, 585, 903, 949, 957, 1276, 1395
HindIII AAGCTT 1 cut(s) 1280
HinfI GANTC 9 cut(s) 175, 568, 596, 1382, 1450, 1460, 1535, 1543, 1576
HphI GGTGA 3 cut(s) 715, 1032, 1565
Hpy188I TCNGA 7 cut(s) 202, 601, 862, 1019, 1378, 1548, 1635
Hpy188III TCNNGA 5 cut(s) 190, 319, 800, 1226, 1580
HpyAV CCTTC 3 cut(s) 596, 1662, 1686
HpyCH4III ACNGT 4 cut(s) 454, 927, 1057, 1164
HpyCH4IV ACGT 1 cut(s) 383
HpySE526I ACGT 1 cut(s) 383
Hsp92II CATG 7 cut(s) 512, 585, 903, 949, 957, 1276, 1395
KroI GCCGGC 1 cut(s) 71
KroNI GCCGGC 1 cut(s) 73
Kzo9I GATC 5 cut(s) 368, 663, 724, 1202, 1235
LguI GCTCTTC 1 cut(s) 1512
LmnI GCTCC 2 cut(s) 1090, 1486
Lsp1109I GCAGC 9 cut(s) 236, 491, 802, 805, 817, 827, 881, 1534, 1630
LweI GCATC 7 cut(s) 283, 744, 817, 1016, 1277, 1405, 1485
MaeI CTAG 5 cut(s) 348, 768, 794, 1170, 1437
MaeII ACGT 1 cut(s) 383
MaeIII GTNAC 6 cut(s) 134, 152, 628, 1057, 1540, 1559
MalI GATC 5 cut(s) 370, 665, 726, 1204, 1237
MboI GATC 5 cut(s) 368, 663, 724, 1202, 1235
MflI RGATCY 2 cut(s) 1202, 1235
MlyI GAGTC 4 cut(s) 169, 562, 605, 1537
Mph1103I ATGCAT 1 cut(s) 1500
MreI CGCCGGCG 1 cut(s) 71
MroNI GCCGGC 1 cut(s) 71
MroXI GAANNNNTTC 2 cut(s) 435, 453
MseI TTAA 2 cut(s) 1194, 1352
MspA1I CMGCKG 3 cut(s) 374, 470, 818
MspR9I CCNGG 1 cut(s) 891
Mva1269I GAATGC 1 cut(s) 1303
MvaI CCWGG 1 cut(s) 891
MvnI CGCG 2 cut(s) 212, 358
NaeI GCCGGC 1 cut(s) 73
NdeI CATATG 2 cut(s) 882, 1500
NdeII GATC 5 cut(s) 368, 663, 724, 1202, 1235
NgoMIV GCCGGC 1 cut(s) 71
NheI GCTAGC 1 cut(s) 793
NlaIII CATG 7 cut(s) 512, 585, 903, 949, 957, 1276, 1395
NlaIV GGNNCC 1 cut(s) 85
NmeAIII GCCGAG 2 cut(s) 85, 145
NmuCI GTSAC 2 cut(s) 1540, 1559
NsiI ATGCAT 1 cut(s) 1500
NspI RCATGY 3 cut(s) 903, 957, 1395
PaeI GCATGC 2 cut(s) 903, 957
PceI AGGCCT 1 cut(s) 1480
PciI ACATGT 1 cut(s) 1391
PciSI GCTCTTC 1 cut(s) 1512
PctI GAATGC 1 cut(s) 1303
PdiI GCCGGC 1 cut(s) 73
PdmI GAANNNNTTC 2 cut(s) 435, 453
PfeI GAWTC 5 cut(s) 1382, 1450, 1460, 1535, 1576
PflMI CCANNNNNTGG 1 cut(s) 497
PinAI ACCGGT 1 cut(s) 156
PkrI GCNGC 9 cut(s) 226, 481, 792, 817, 820, 832, 871, 1524, 1645
PleI GAGTC 4 cut(s) 169, 562, 604, 1537
PpsI GAGTC 4 cut(s) 169, 562, 604, 1537
PscI ACATGT 1 cut(s) 1391
PsiI TTATAA 1 cut(s) 1404
Psp6I CCWGG 1 cut(s) 889
PspEI GGTNACC 2 cut(s) 134, 152
PspGI CCWGG 1 cut(s) 889
PspN4I GGNNCC 1 cut(s) 85
PspPI GGNCC 2 cut(s) 84, 147
PstI CTGCAG 1 cut(s) 1015
PstNI CAGNNNCTG 1 cut(s) 1061
PsuI RGATCY 2 cut(s) 1202, 1235
PvuII CAGCTG 2 cut(s) 374, 818
RsaI GTAC 4 cut(s) 335, 386, 1340, 1424
RsaNI GTAC 4 cut(s) 334, 385, 1339, 1423
SapI GCTCTTC 1 cut(s) 1512
SaqAI TTAA 2 cut(s) 1194, 1352
SatI GCNGC 9 cut(s) 225, 480, 791, 816, 819, 831, 870, 1523, 1644
Sau3AI GATC 5 cut(s) 368, 663, 724, 1202, 1235
Sau96I GGNCC 2 cut(s) 84, 147
ScaI AGTACT 1 cut(s) 1340
SchI GAGTC 4 cut(s) 169, 562, 605, 1537
ScrFI CCNGG 1 cut(s) 891
SfaNI GCATC 7 cut(s) 283, 744, 817, 1016, 1277, 1405, 1485
SfcI CTRYAG 3 cut(s) 411, 1011, 1342
SgrAI CRCCGGYG 1 cut(s) 71
SinI GGWCC 1 cut(s) 84
SmlI CTYRAG 3 cut(s) 101, 188, 798
SmoI CTYRAG 3 cut(s) 101, 188, 798
SpeI ACTAGT 1 cut(s) 1436
SphI GCATGC 2 cut(s) 903, 957
SseBI AGGCCT 1 cut(s) 1480
SsiI CCGC 5 cut(s) 42, 212, 231, 358, 470
SspMI CTAG 5 cut(s) 348, 768, 794, 1170, 1437
StuI AGGCCT 1 cut(s) 1480
StyD4I CCNGG 1 cut(s) 889
TaaI ACNGT 4 cut(s) 454, 927, 1057, 1164
TaiI ACGT 1 cut(s) 386
TaqI TCGA 5 cut(s) 318, 367, 548, 566, 666
TatI WGTACW 2 cut(s) 1338, 1422
TfiI GAWTC 5 cut(s) 1382, 1450, 1460, 1535, 1576
Tru1I TTAA 2 cut(s) 1194, 1352
Tru9I TTAA 2 cut(s) 1194, 1352
TscAI CASTG 4 cut(s) 882, 966, 1545, 1686
TseFI GTSAC 2 cut(s) 1540, 1559
TseI GCWGC 9 cut(s) 224, 479, 790, 815, 818, 830, 869, 1522, 1643
Tsp45I GTSAC 2 cut(s) 1540, 1559
TspDTI ATGAA 5 cut(s) 668, 732, 1095, 1289, 1485
TspGWI ACGGA 1 cut(s) 76
TspRI CASTG 4 cut(s) 882, 966, 1545, 1686
Van91I CCANNNNNTGG 1 cut(s) 497
VpaK11BI GGWCC 1 cut(s) 84
XapI RAATTY 4 cut(s) 10, 314, 679, 912
XceI RCATGY 3 cut(s) 903, 957, 1395
XmnI GAANNNNTTC 2 cut(s) 435, 453
XspI CTAG 5 cut(s) 348, 768, 794, 1170, 1437
ZrmI AGTACT 1 cut(s) 1340
Zsp2I ATGCAT 1 cut(s) 1500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.