Rroxscaffold_2G00116810

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000916
Physical Location & Seq
Forward (+)
44070424 .. 44074055
3632 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00116810.1

Sequence Viewer

Length: 873 bp
ATGGCTTTCGACGCTTTGACGGAGCCTCTTACTATTGTGTTCACGCTTCCCGCATCAGACCAGAAGATCACCTCTCCTAGATGTATTTTTGAACTTGGTTTCTTCACACCAGCCCCTCATCAGTGGCAATATGGTCAACAAATTCAACATCGCAGGGAAACCTTCAGTCGTGTTCCAAAAATAGAAGAGAAGTACGATGCTACAATTTACTCATTTGTTTCAAATGAGAATGGAAGCTATCTTAGTTATGCAGCTAATCCTTTTGCCTATCCTGATAACTTTTTTAGTATATGCAACCCACCTAATCTTCCTCGGTGTGGCTGTCTAAAAGGATTTGAACCCGAATTCCATAAAGACTGGGAATTAGAAGATCACTCAAATGGCTGTGGGAGGAAAACTTCTTGTCATTGCAGTGATGAATGGAATTCTGCATTCTTGTTGATGGAGAATGTTACTTACCCGAAGAGTCCCAATTCCTTGGTAGTTGATAACATTGACAAATGTAGATTAGCTTGCTTGAGAAATTGCTCATGCACTGCTTTTGCTTATGATAATCAGTGTCTGATTTGGGGAGGTAATGCTGACAAAGATGAACTCATTAGAGCATGCAAAGTTGCGTGTTGGTGTATTCAATATGAGGAGAAGGATAGGCCAACAATGAGGCAGGTTGTTCAAATTCTCGAAGGAGCTTTAGATGTTGTTGGTGGTCGCATTAGATGTTTGAAGATTAGAGAAGATGAGAGGGTAGAAGGGTATGGGATTATGAGAATGGTGGAGGGGAGGAGTGAATGTGAATTTGGAGTGGAGCTTGAGATGGCAGTGGTCGGTGGGTTTCTTTGGGGAATGAGAGATTTGGTTGAAGTGCTATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase S_locus_glycop

Protein Analysis

290

Amino Acids

33.19

Weight (kDa)

5.05

Isoelectric Point (pI)

46.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAN_2 PF08276 139 - 193 2.5e-10 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 655
AciI CCGC 1 cut(s) 51
AcsI RAATTY 5 cut(s) 141, 344, 424, 675, 794
AcuI CTGAAG 1 cut(s) 148
AfaI GTAC 1 cut(s) 194
AfiI CCNNNNNNNGG 1 cut(s) 317
AgsI TTSAA 8 cut(s) 92, 146, 222, 338, 632, 674, 724, 860
AjuI GAANNNNNNNTTGG 2 cut(s) 780, 812
AloI GAACNNNNNNTCC 2 cut(s) 330, 362
AluBI AGCT 5 cut(s) 237, 254, 512, 689, 808
AluI AGCT 5 cut(s) 237, 254, 512, 689, 808
AlwNI CAGNNNCTG 1 cut(s) 562
AoxI GGCC 1 cut(s) 650
ApeKI GCWGC 1 cut(s) 251
ApoI RAATTY 5 cut(s) 141, 344, 424, 675, 794
AsuHPI GGTGA 1 cut(s) 61
BbvI GCAGC 1 cut(s) 263
BccI CCATC 2 cut(s) 436, 808
BfaI CTAG 1 cut(s) 78
BfuAI ACCTGC 1 cut(s) 655
BisI GCNGC 1 cut(s) 252
BlsI GCNGC 1 cut(s) 253
BmiI GGNNCC 1 cut(s) 24
BmrI ACTGGG 1 cut(s) 367
BmsI GCATC 2 cut(s) 62, 187
BmuI ACTGGG 1 cut(s) 367
BpuEI CTTGAG 2 cut(s) 538, 830
BsaJI CCNNGG 2 cut(s) 311, 477
BsaXI ACNNNNNCTCC 2 cut(s) 775, 805
Bsc4I CCNNNNNNNGG 1 cut(s) 317
Bse1I ACTGG 1 cut(s) 362
Bse3DI GCAATG 1 cut(s) 406
BseDI CCNNGG 2 cut(s) 311, 477
BseLI CCNNNNNNNGG 1 cut(s) 317
BseMI GCAATG 1 cut(s) 406
BseNI ACTGG 1 cut(s) 362
BseRI GAGGAG 2 cut(s) 653, 796
BseXI GCAGC 1 cut(s) 263
BshFI GGCC 1 cut(s) 652
BslFI GGGAC 1 cut(s) 453
BslI CCNNNNNNNGG 1 cut(s) 317
BsmFI GGGAC 1 cut(s) 453
BsmI GAATGC 1 cut(s) 431
BsnI GGCC 1 cut(s) 652
Bsp143I GATC 2 cut(s) 66, 370
BspACI CCGC 1 cut(s) 51
BspANI GGCC 1 cut(s) 652
BspLI GGNNCC 1 cut(s) 24
BspMI ACCTGC 1 cut(s) 655
BsrDI GCAATG 1 cut(s) 406
BsrI ACTGG 1 cut(s) 362
BssECI CCNNGG 2 cut(s) 311, 477
BssMI GATC 2 cut(s) 66, 370
BssT1I CCWWGG 1 cut(s) 477
Bst6I CTCTTC 2 cut(s) 180, 458
BstC8I GCNNGC 2 cut(s) 514, 607
BstDEI CTNAG 1 cut(s) 242
BstKTI GATC 2 cut(s) 69, 373
BstMBI GATC 2 cut(s) 66, 370
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNSI RCATGY 1 cut(s) 609
BstV1I GCAGC 1 cut(s) 263
BstXI CCANNNNNNTGG 1 cut(s) 478
BsuRI GGCC 1 cut(s) 652
BtgZI GCGATG 1 cut(s) 134
BtsI GCAGTG 3 cut(s) 418, 534, 825
BtsIMutI CAGTG 5 cut(s) 128, 418, 534, 563, 825
BveI ACCTGC 1 cut(s) 655
Cac8I GCNNGC 2 cut(s) 514, 607
CaiI CAGNNNCTG 1 cut(s) 562
CseI GACGC 1 cut(s) 20
Csp6I GTAC 1 cut(s) 193
CviAII CATG 2 cut(s) 531, 606
CviQI GTAC 1 cut(s) 193
DdeI CTNAG 1 cut(s) 242
DpnI GATC 2 cut(s) 68, 372
DpnII GATC 2 cut(s) 66, 370
Eam1104I CTCTTC 2 cut(s) 180, 458
EarI CTCTTC 2 cut(s) 180, 458
Eco130I CCWWGG 1 cut(s) 477
Eco57I CTGAAG 1 cut(s) 148
EcoRI GAATTC 2 cut(s) 344, 424
EcoT14I CCWWGG 1 cut(s) 477
ErhI CCWWGG 1 cut(s) 477
FaeI CATG 2 cut(s) 534, 609
FaqI GGGAC 1 cut(s) 453
FatI CATG 2 cut(s) 530, 605
FauI CCCGC 1 cut(s) 58
Fnu4HI GCNGC 1 cut(s) 252
Fsp4HI GCNGC 1 cut(s) 252
FspBI CTAG 1 cut(s) 78
GluI GCNGC 1 cut(s) 252
HaeIII GGCC 1 cut(s) 652
HgaI GACGC 1 cut(s) 20
Hin1II CATG 2 cut(s) 534, 609
HincII GTYRAC 1 cut(s) 137
HindII GTYRAC 1 cut(s) 137
HinfI GANTC 1 cut(s) 466
HphI GGTGA 1 cut(s) 61
Hpy166II GTNNAC 2 cut(s) 42, 137
Hpy188I TCNGA 2 cut(s) 58, 564
Hpy188III TCNNGA 2 cut(s) 272, 680
Hpy8I GTNNAC 2 cut(s) 42, 137
Hpy99I CGWCG 1 cut(s) 14
HpyAV CCTTC 4 cut(s) 172, 637, 677, 743
HpyCH4V TGCA 6 cut(s) 251, 294, 411, 431, 534, 609
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 242
Hsp92II CATG 2 cut(s) 534, 609
Kzo9I GATC 2 cut(s) 66, 370
LmnI GCTCC 3 cut(s) 22, 686, 805
LpnPI CCDG 6 cut(s) 74, 123, 139, 285, 343, 650
Lsp1109I GCAGC 1 cut(s) 263
LweI GCATC 2 cut(s) 62, 187
MaeI CTAG 1 cut(s) 78
MaeIII GTNAC 1 cut(s) 451
MalI GATC 2 cut(s) 68, 372
MboI GATC 2 cut(s) 66, 370
MboII GAAGA 8 cut(s) 76, 94, 197, 299, 380, 475, 736, 746
MluCI AATT 9 cut(s) 141, 204, 344, 362, 424, 472, 523, 675, 794
MlyI GAGTC 1 cut(s) 475
MslI CAYNNNNRTG 2 cut(s) 378, 411
Mva1269I GAATGC 1 cut(s) 431
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 2 cut(s) 66, 370
NlaIII CATG 2 cut(s) 534, 609
NlaIV GGNNCC 1 cut(s) 24
NspI RCATGY 1 cut(s) 609
PaeI GCATGC 1 cut(s) 609
PctI GAATGC 1 cut(s) 431
PkrI GCNGC 1 cut(s) 253
PleI GAGTC 1 cut(s) 474
PpsI GAGTC 1 cut(s) 474
PspN4I GGNNCC 1 cut(s) 24
PstNI CAGNNNCTG 1 cut(s) 562
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
RseI CAYNNNNRTG 2 cut(s) 378, 411
SatI GCNGC 1 cut(s) 252
Sau3AI GATC 2 cut(s) 66, 370
SchI GAGTC 1 cut(s) 475
SfaNI GCATC 2 cut(s) 62, 187
SmiMI CAYNNNNRTG 2 cut(s) 378, 411
SmlI CTYRAG 2 cut(s) 517, 809
SmoI CTYRAG 2 cut(s) 517, 809
SphI GCATGC 1 cut(s) 609
Sse9I AATT 9 cut(s) 141, 204, 344, 362, 424, 472, 523, 675, 794
SsiI CCGC 1 cut(s) 51
SspMI CTAG 1 cut(s) 78
StyI CCWWGG 1 cut(s) 477
TaqI TCGA 2 cut(s) 9, 681
TasI AATT 9 cut(s) 141, 204, 344, 362, 424, 472, 523, 675, 794
TscAI CASTG 5 cut(s) 128, 418, 541, 563, 825
TseI GCWGC 1 cut(s) 251
TspDTI ATGAA 2 cut(s) 432, 606
TspGWI ACGGA 1 cut(s) 35
TspRI CASTG 5 cut(s) 128, 418, 541, 563, 825
XapI RAATTY 5 cut(s) 141, 344, 424, 675, 794
XceI RCATGY 1 cut(s) 609
XspI CTAG 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.