Rh2CG311000

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000916
Physical Location & Seq
Reverse (-)
39278202 .. 39280918
2717 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG311000.1

Sequence Viewer

Length: 1203 bp
ATGAAAACTAGTATCAGAAACCACTTGATTTCCCAGTCTCTGCTACTCTTGTTATCTTACACTACTTGTACTCCCAAAGCTATTGAGATTCTGTTACCAGGCCAATCTCTCAATGGGGACCAGAGGATCACCTCTCCTGGTGGCATTTTTGAACTTGGTTTTTTCACACCAGGTAACTCTCAAAACCATTACATAGGCATCTGGTACAAAAATCTACCCAATCAAACAGTTGTTTGGGTGGCAAACAGAGACCAACCTGTTTCTGATCCTATTTCTTCAACATTTCTACTCCATAAAAATGGAAACTTGACCTTAAACAGCCCCTCAACAGTGGCGATATGGTCAACAAATTCAACGTCACAGGTTAGAAATTCTACTATAGCCATGCTTCTTGACGATGGCAACTTTGTCATAAGAGATGCATCTGCAGTACTATGGCAGAGTTTCGATCATCCAACCAATACTTGGCTGCCAGGTGCAAGGCTTGGATATAACAATCTTACCAAGCAAATCCTAAGTATAACCCCCTGGAGAAATCCGCAATATCCAGCACCTGGTCCCTTTTCTTTTGAGCTCGAACAAACAAGTCTTCGGCTATTATGGAATAGTTCGGAAACTTACTGGACCAGCGGTAATTGGACAGGTAAAACTTTCAGCCATCTTCAAGACATAGAAGAGAAGCATGTTCCCTCAATTTTCTCATTTGTTTTAAATGACACTGGAAGCTACCTTAGTTATGCAGTTCGTGCTTCTGCCTATCCTGATCCCTTTATTAGGAATCATACCTTTATTAGGTACATGATAGAAACCACTGGTCAAATGAAGTTCTTTGTCATGGAGAACGGCTCCCTGCAATGGAATTTGCTATGGATGGATCCAATGGAACGATGTGATGTTTATGCTTCCTGTGGTGCTTTTAGTATATGCAACCCACGTAATCTTCCTCGGTGTGGCTGTCTAAAAGGATTCGAACCCAAATTCCATAAAGACTGGGAATTAGAAGATCACTCAAATGGCTGTGGGAGGAAAACTTCTTTTCATTGCAGTGGTGAGGGGAATTCTGCATTCCTGGTGATGGAGAATGTTACTTACCCGAAGAGTCCTGACTCCTTGGTAGTTGATAACATTGACAGATGTAGATTAGCTTGCTTGAGAAATTGCTCATGCACTGCTTTTGCTTATGATAATCAGTGTCTGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase S_locus_glycop

Protein Analysis

400

Amino Acids

45.2

Weight (kDa)

6.55

Isoelectric Point (pI)

45.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 76 - 178 3.2e-30 D-mannose binding lectin
S_locus_glycop PF00954 208 - 327 1.8e-22 S-locus glycoprotein domain
PAN_2 PF08276 348 - 400 3.7e-09 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 465, 554
AciI CCGC 2 cut(s) 539, 630
AclWI GGATC 5 cut(s) 134, 260, 758, 869, 882
AcsI RAATTY 5 cut(s) 349, 370, 859, 977, 1057
AfaI GTAC 4 cut(s) 70, 206, 432, 797
AfiI CCNNNNNNNGG 7 cut(s) 465, 554, 774, 792, 855, 950, 1075
AgsI TTSAA 4 cut(s) 152, 279, 354, 665
AhlI ACTAGT 1 cut(s) 8
AjnI CCWGG 7 cut(s) 97, 136, 169, 472, 527, 553, 1068
AloI GAACNNNNNNTCC 2 cut(s) 963, 995
AluBI AGCT 4 cut(s) 80, 574, 726, 1145
AluI AGCT 4 cut(s) 80, 574, 726, 1145
Alw21I GWGCWC 1 cut(s) 576
Alw26I GTCTC 2 cut(s) 42, 243
AlwI GGATC 5 cut(s) 134, 260, 758, 869, 882
AlwNI CAGNNNCTG 3 cut(s) 40, 554, 1195
AoxI GGCC 1 cut(s) 100
ApeKI GCWGC 1 cut(s) 469
ApoI RAATTY 5 cut(s) 349, 370, 859, 977, 1057
ArsI GACNNNNNNTTYG 2 cut(s) 341, 373
AspS9I GGNCC 3 cut(s) 118, 557, 624
AsuHPI GGTGA 3 cut(s) 121, 1061, 1084
AsuII TTCGAA 1 cut(s) 969
AvaII GGWCC 3 cut(s) 118, 557, 624
BamHI GGATCC 1 cut(s) 874
BanII GRGCYC 1 cut(s) 576
BbsI GAAGAC 1 cut(s) 581
Bbv12I GWGCWC 1 cut(s) 576
BbvI GCAGC 1 cut(s) 456
BccI CCATC 4 cut(s) 392, 666, 865, 1069
BceAI ACGGC 1 cut(s) 859
BciT130I CCWGG 7 cut(s) 99, 138, 171, 474, 529, 555, 1070
BcoDI GTCTC 2 cut(s) 42, 243
BcuI ACTAGT 1 cut(s) 8
BfaI CTAG 1 cut(s) 9
BfmI CTRYAG 2 cut(s) 378, 426
BisI GCNGC 1 cut(s) 470
BlsI GCNGC 1 cut(s) 471
BmcAI AGTACT 1 cut(s) 432
Bme1390I CCNGG 7 cut(s) 99, 138, 171, 474, 529, 555, 1070
Bme18I GGWCC 3 cut(s) 118, 557, 624
BmgT120I GGNCC 3 cut(s) 118, 557, 624
BmiI GGNNCC 4 cut(s) 119, 559, 847, 876
BmrFI CCNGG 7 cut(s) 99, 138, 171, 474, 529, 555, 1070
BmrI ACTGGG 2 cut(s) 28, 1000
BmsI GCATC 3 cut(s) 207, 409, 431
BmuI ACTGGG 2 cut(s) 28, 1000
BpiI GAAGAC 1 cut(s) 581
BplI GAGNNNNNCTC 2 cut(s) 830, 862
BpmI CTGGAG 1 cut(s) 550
Bpu14I TTCGAA 1 cut(s) 969
BpuEI CTTGAG 1 cut(s) 1171
BsaAI YACGTR 1 cut(s) 935
BsaI GGTCTC 1 cut(s) 243
BsaJI CCNNGG 3 cut(s) 527, 944, 1110
BsaXI ACNNNNNCTCC 2 cut(s) 55, 85
Bsc4I CCNNNNNNNGG 7 cut(s) 465, 554, 774, 792, 855, 950, 1075
Bse1I ACTGG 5 cut(s) 34, 626, 724, 817, 995
Bse3DI GCAATG 2 cut(s) 860, 1039
BseBI CCWGG 7 cut(s) 99, 138, 171, 474, 529, 555, 1070
BseDI CCNNGG 3 cut(s) 527, 944, 1110
BseGI GGATG 2 cut(s) 451, 876
BseLI CCNNNNNNNGG 7 cut(s) 465, 554, 774, 792, 855, 950, 1075
BseMI GCAATG 2 cut(s) 860, 1039
BseNI ACTGG 5 cut(s) 34, 626, 724, 817, 995
BseXI GCAGC 1 cut(s) 456
BshFI GGCC 1 cut(s) 102
BsiHKAI GWGCWC 1 cut(s) 576
BslFI GGGAC 2 cut(s) 131, 543
BslI CCNNNNNNNGG 7 cut(s) 465, 554, 774, 792, 855, 950, 1075
BsmAI GTCTC 2 cut(s) 42, 243
BsmFI GGGAC 2 cut(s) 131, 543
BsmI GAATGC 1 cut(s) 1064
BsnI GGCC 1 cut(s) 102
Bso31I GGTCTC 1 cut(s) 243
Bsp119I TTCGAA 1 cut(s) 969
Bsp1286I GDGCHC 1 cut(s) 576
Bsp143I GATC 6 cut(s) 126, 265, 448, 763, 874, 1003
BspACI CCGC 2 cut(s) 539, 630
BspANI GGCC 1 cut(s) 102
BspLI GGNNCC 4 cut(s) 119, 559, 847, 876
BspMAI CTGCAG 1 cut(s) 430
BspPI GGATC 5 cut(s) 134, 260, 758, 869, 882
BspT104I TTCGAA 1 cut(s) 969
BspTNI GGTCTC 1 cut(s) 243
BsrDI GCAATG 2 cut(s) 860, 1039
BsrI ACTGG 5 cut(s) 34, 626, 724, 817, 995
BssECI CCNNGG 3 cut(s) 527, 944, 1110
BssMI GATC 6 cut(s) 126, 265, 448, 763, 874, 1003
BssT1I CCWWGG 1 cut(s) 1110
Bst2UI CCWGG 7 cut(s) 99, 138, 171, 474, 529, 555, 1070
Bst4CI ACNGT 2 cut(s) 229, 331
Bst6I CTCTTC 2 cut(s) 669, 1091
BstAPI GCANNNNNTGC 1 cut(s) 746
BstBAI YACGTR 1 cut(s) 935
BstBI TTCGAA 1 cut(s) 969
BstC8I GCNNGC 1 cut(s) 1147
BstDEI CTNAG 2 cut(s) 515, 731
BstENI CCTNNNNNAGG 2 cut(s) 772, 790
BstF5I GGATG 2 cut(s) 451, 876
BstKTI GATC 6 cut(s) 129, 268, 451, 766, 877, 1006
BstMAI GTCTC 2 cut(s) 42, 243
BstMBI GATC 6 cut(s) 126, 265, 448, 763, 874, 1003
BstMWI GCNNNNNNNGC 1 cut(s) 746
BstNI CCWGG 7 cut(s) 99, 138, 171, 474, 529, 555, 1070
BstNSI RCATGY 1 cut(s) 686
BstSCI CCNGG 7 cut(s) 97, 136, 169, 472, 527, 553, 1068
BstSFI CTRYAG 2 cut(s) 378, 426
BstV1I GCAGC 1 cut(s) 456
BstV2I GAAGAC 1 cut(s) 581
BstX2I RGATCY 1 cut(s) 874
BstXI CCANNNNNNTGG 1 cut(s) 299
BstYI RGATCY 1 cut(s) 874
BsuRI GGCC 1 cut(s) 102
BtsCI GGATG 2 cut(s) 451, 876
BtsI GCAGTG 2 cut(s) 1051, 1167
BtsIMutI CAGTG 6 cut(s) 336, 717, 810, 1051, 1167, 1196
Cac8I GCNNGC 1 cut(s) 1147
CaiI CAGNNNCTG 3 cut(s) 40, 554, 1195
Cfr13I GGNCC 3 cut(s) 118, 557, 624
CsiI ACCWGGT 2 cut(s) 169, 553
Csp6I GTAC 4 cut(s) 69, 205, 431, 796
CviAII CATG 5 cut(s) 385, 683, 799, 835, 1164
CviQI GTAC 4 cut(s) 69, 205, 431, 796
DdeI CTNAG 2 cut(s) 515, 731
DpnI GATC 6 cut(s) 128, 267, 450, 765, 876, 1005
DpnII GATC 6 cut(s) 126, 265, 448, 763, 874, 1003
DraI TTTAAA 1 cut(s) 711
Eam1104I CTCTTC 2 cut(s) 669, 1091
EarI CTCTTC 2 cut(s) 669, 1091
Ecl136II GAGCTC 1 cut(s) 574
Eco130I CCWWGG 1 cut(s) 1110
Eco24I GRGCYC 1 cut(s) 576
Eco31I GGTCTC 1 cut(s) 243
Eco47I GGWCC 3 cut(s) 118, 557, 624
Eco53kI GAGCTC 1 cut(s) 574
EcoICRI GAGCTC 1 cut(s) 574
EcoNI CCTNNNNNAGG 2 cut(s) 772, 790
EcoRI GAATTC 1 cut(s) 1057
EcoRII CCWGG 7 cut(s) 97, 136, 169, 472, 527, 553, 1068
EcoT14I CCWWGG 1 cut(s) 1110
EcoT22I ATGCAT 1 cut(s) 424
EcoT38I GRGCYC 1 cut(s) 576
ErhI CCWWGG 1 cut(s) 1110
FaeI CATG 5 cut(s) 388, 686, 802, 838, 1167
FaqI GGGAC 2 cut(s) 131, 543
FatI CATG 5 cut(s) 384, 682, 798, 834, 1163
Fnu4HI GCNGC 1 cut(s) 470
FokI GGATG 2 cut(s) 438, 883
FriOI GRGCYC 1 cut(s) 576
Fsp4HI GCNGC 1 cut(s) 470
FspBI CTAG 1 cut(s) 9
GluI GCNGC 1 cut(s) 470
GsuI CTGGAG 1 cut(s) 550
HaeIII GGCC 1 cut(s) 102
Hin1II CATG 5 cut(s) 388, 686, 802, 838, 1167
HincII GTYRAC 1 cut(s) 345
HindII GTYRAC 1 cut(s) 345
HinfI GANTC 5 cut(s) 88, 778, 966, 1099, 1106
HphI GGTGA 3 cut(s) 121, 1061, 1084
Hpy166II GTNNAC 1 cut(s) 345
Hpy188I TCNGA 4 cut(s) 17, 265, 613, 1197
Hpy188III TCNNGA 4 cut(s) 392, 665, 761, 1103
Hpy8I GTNNAC 1 cut(s) 345
HpyCH4III ACNGT 2 cut(s) 229, 331
HpyCH4IV ACGT 2 cut(s) 356, 934
HpyCH4V TGCA 9 cut(s) 422, 428, 479, 740, 853, 927, 1044, 1064, 1167
HpyF10VI GCNNNNNNNGC 1 cut(s) 746
HpyF3I CTNAG 2 cut(s) 515, 731
HpySE526I ACGT 2 cut(s) 356, 934
Hsp92II CATG 5 cut(s) 388, 686, 802, 838, 1167
Kzo9I GATC 6 cut(s) 126, 265, 448, 763, 874, 1003
LmnI GCTCC 1 cut(s) 851
Lsp1109I GCAGC 1 cut(s) 456
LweI GCATC 3 cut(s) 207, 409, 431
MabI ACCWGGT 2 cut(s) 169, 553
MaeI CTAG 1 cut(s) 9
MaeII ACGT 2 cut(s) 356, 934
MaeIII GTNAC 4 cut(s) 93, 173, 357, 1084
MalI GATC 6 cut(s) 128, 267, 450, 765, 876, 1005
MboI GATC 6 cut(s) 126, 265, 448, 763, 874, 1003
MboII GAAGA 7 cut(s) 267, 581, 653, 686, 932, 1013, 1108
MflI RGATCY 1 cut(s) 874
MhlI GDGCHC 1 cut(s) 576
MluCI AATT 9 cut(s) 349, 370, 634, 693, 859, 977, 995, 1057, 1156
MlyI GAGTC 2 cut(s) 1100, 1108
MmeI TCCRAC 1 cut(s) 479
MnlI CCTC 7 cut(s) 117, 142, 334, 700, 954, 1017, 1045
Mph1103I ATGCAT 1 cut(s) 424
MseI TTAA 2 cut(s) 314, 710
MslI CAYNNNNRTG 3 cut(s) 297, 1011, 1044
MspA1I CMGCKG 1 cut(s) 630
MspR9I CCNGG 7 cut(s) 99, 138, 171, 474, 529, 555, 1070
Mva1269I GAATGC 1 cut(s) 1064
MvaI CCWGG 7 cut(s) 99, 138, 171, 474, 529, 555, 1070
MwoI GCNNNNNNNGC 1 cut(s) 746
NdeII GATC 6 cut(s) 126, 265, 448, 763, 874, 1003
NlaIII CATG 5 cut(s) 388, 686, 802, 838, 1167
NlaIV GGNNCC 4 cut(s) 119, 559, 847, 876
NmuCI GTSAC 1 cut(s) 357
NsiI ATGCAT 1 cut(s) 424
NspI RCATGY 1 cut(s) 686
NspV TTCGAA 1 cut(s) 969
PctI GAATGC 1 cut(s) 1064
PfeI GAWTC 3 cut(s) 88, 778, 966
PflMI CCANNNNNTGG 2 cut(s) 465, 554
PkrI GCNGC 1 cut(s) 471
PleI GAGTC 2 cut(s) 1100, 1107
PpsI GAGTC 2 cut(s) 1100, 1107
Ppu21I YACGTR 1 cut(s) 935
Psp124BI GAGCTC 1 cut(s) 576
Psp6I CCWGG 7 cut(s) 97, 136, 169, 472, 527, 553, 1068
PspGI CCWGG 7 cut(s) 97, 136, 169, 472, 527, 553, 1068
PspN4I GGNNCC 4 cut(s) 119, 559, 847, 876
PspPI GGNCC 3 cut(s) 118, 557, 624
PstI CTGCAG 1 cut(s) 430
PstNI CAGNNNCTG 3 cut(s) 40, 554, 1195
PsuI RGATCY 1 cut(s) 874
RsaI GTAC 4 cut(s) 70, 206, 432, 797
RsaNI GTAC 4 cut(s) 69, 205, 431, 796
RseI CAYNNNNRTG 3 cut(s) 297, 1011, 1044
SacI GAGCTC 1 cut(s) 576
SaqAI TTAA 2 cut(s) 314, 710
SatI GCNGC 1 cut(s) 470
Sau3AI GATC 6 cut(s) 126, 265, 448, 763, 874, 1003
Sau96I GGNCC 3 cut(s) 118, 557, 624
ScaI AGTACT 1 cut(s) 432
SchI GAGTC 2 cut(s) 1100, 1108
ScrFI CCNGG 7 cut(s) 99, 138, 171, 474, 529, 555, 1070
SduI GDGCHC 1 cut(s) 576
SexAI ACCWGGT 2 cut(s) 169, 553
SfaNI GCATC 3 cut(s) 207, 409, 431
SfcI CTRYAG 2 cut(s) 378, 426
SfuI TTCGAA 1 cut(s) 969
SinI GGWCC 3 cut(s) 118, 557, 624
SmiMI CAYNNNNRTG 3 cut(s) 297, 1011, 1044
SmlI CTYRAG 1 cut(s) 1150
SmoI CTYRAG 1 cut(s) 1150
SpeI ACTAGT 1 cut(s) 8
Sse9I AATT 9 cut(s) 349, 370, 634, 693, 859, 977, 995, 1057, 1156
SsiI CCGC 2 cut(s) 539, 630
SspMI CTAG 1 cut(s) 9
SstI GAGCTC 1 cut(s) 576
StyD4I CCNGG 7 cut(s) 97, 136, 169, 472, 527, 553, 1068
StyI CCWWGG 1 cut(s) 1110
TaaI ACNGT 2 cut(s) 229, 331
TaiI ACGT 2 cut(s) 359, 937
TaqI TCGA 3 cut(s) 447, 576, 969
TasI AATT 9 cut(s) 349, 370, 634, 693, 859, 977, 995, 1057, 1156
TatI WGTACW 2 cut(s) 68, 430
TfiI GAWTC 3 cut(s) 88, 778, 966
Tru1I TTAA 2 cut(s) 314, 710
Tru9I TTAA 2 cut(s) 314, 710
TscAI CASTG 6 cut(s) 336, 724, 817, 1051, 1174, 1196
TseFI GTSAC 1 cut(s) 357
TseI GCWGC 1 cut(s) 469
Tsp45I GTSAC 1 cut(s) 357
TspDTI ATGAA 3 cut(s) 17, 836, 1028
TspRI CASTG 6 cut(s) 336, 724, 817, 1051, 1174, 1196
Van91I CCANNNNNTGG 2 cut(s) 465, 554
VpaK11BI GGWCC 3 cut(s) 118, 557, 624
XagI CCTNNNNNAGG 2 cut(s) 772, 790
XapI RAATTY 5 cut(s) 349, 370, 859, 977, 1057
XceI RCATGY 1 cut(s) 686
XcmI CCANNNNNNNNNTGG 2 cut(s) 110, 462
XspI CTAG 1 cut(s) 9
ZrmI AGTACT 1 cut(s) 432
Zsp2I ATGCAT 1 cut(s) 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.