Rh2DG350700

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000916
Physical Location & Seq
Reverse (-)
49124767 .. 49125585
819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG350700.1

Sequence Viewer

Length: 819 bp
ATGCTTCTTGACGATGGCAACTTTGTCATAAGAGATGCATCTGCAGTACTATGGCAGAGTTTCGATCATCCAACCAATACTTGGCTGCCAGGTGCAAGGCTTGGATATAACAATCTTACCAAGCAAATCCTAAGTATAACCCCCTGGAGAAATCCGCAATATCCAGCACCTGGTCCCTTTTCTTTTGAGCTCGAACAAACAAGTCTTCGGCTATTATGGAATAGTTCGGAAACTTACTGGACCAGCGGTAATTGGACAGGTAAAACTTTCAGCCATCTTCAAGACATAGAAGAGAAGCATGTTCCCTCAATTTTCTCATTTGTTTTAAATGACACTGGAAGCTACCTTAGTTATGCAGTTCGTGCTTCTGCCTATCCTGATCCCTTTATTAGGAATCATACCTTTATTAGGTACATGATAGAAACCACTGGTCAAATGAAGTTCTTTGTCATGGAGAACGGCTCCCTGCAATGGAATTTGCTATGGATGGATCCAATGGAACGATGTGATGTTTATGCTTCCTGTGGTGCTTTTAGTATATGCAACCCACGTAATCTTCCTCGGTGTGGCTGTCTAAAAGGATTCGAACCCAAATTCCATAAAGACTGGGAATTAGAAGATCACTCAAATGGCTGTGGGAGGAAAACTTCTTTTCATTGCAGTGGTGAGGGGAATTCTGCATTCCTGGTGATGGAGAATGTTACTTACCCGAAGAGTCCTGACTCCTTGGTAGTTGATAACATTGACAGATGTAGATTAGCTTGCTTGAGAAATTGCTCATGCACTGCTTTTGCTTATGATAATCAGTGTCTGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase S_locus_glycop

Protein Analysis

272

Amino Acids

31.14

Weight (kDa)

5.79

Isoelectric Point (pI)

44.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 2 - 50 6.3e-13 D-mannose binding lectin
S_locus_glycop PF00954 80 - 199 8.6e-23 S-locus glycoprotein domain
PAN_2 PF08276 220 - 272 2.1e-09 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 81, 170
AciI CCGC 2 cut(s) 155, 246
AclWI GGATC 3 cut(s) 374, 485, 498
AcsI RAATTY 3 cut(s) 475, 593, 673
AfaI GTAC 2 cut(s) 48, 413
AfiI CCNNNNNNNGG 7 cut(s) 81, 170, 390, 408, 471, 566, 691
AgsI TTSAA 1 cut(s) 281
AjnI CCWGG 4 cut(s) 88, 143, 169, 684
AloI GAACNNNNNNTCC 2 cut(s) 579, 611
AluBI AGCT 3 cut(s) 190, 342, 761
AluI AGCT 3 cut(s) 190, 342, 761
Alw21I GWGCWC 1 cut(s) 192
AlwI GGATC 3 cut(s) 374, 485, 498
AlwNI CAGNNNCTG 2 cut(s) 170, 811
ApeKI GCWGC 1 cut(s) 85
ApoI RAATTY 3 cut(s) 475, 593, 673
AspS9I GGNCC 2 cut(s) 173, 240
AsuHPI GGTGA 2 cut(s) 677, 700
AsuII TTCGAA 1 cut(s) 585
AvaII GGWCC 2 cut(s) 173, 240
BamHI GGATCC 1 cut(s) 490
BanII GRGCYC 1 cut(s) 192
BbsI GAAGAC 1 cut(s) 197
Bbv12I GWGCWC 1 cut(s) 192
BbvI GCAGC 1 cut(s) 72
BccI CCATC 4 cut(s) 8, 282, 481, 685
BceAI ACGGC 1 cut(s) 475
BciT130I CCWGG 4 cut(s) 90, 145, 171, 686
BfmI CTRYAG 1 cut(s) 42
BisI GCNGC 1 cut(s) 86
BlsI GCNGC 1 cut(s) 87
BmcAI AGTACT 1 cut(s) 48
Bme1390I CCNGG 4 cut(s) 90, 145, 171, 686
Bme18I GGWCC 2 cut(s) 173, 240
BmgT120I GGNCC 2 cut(s) 173, 240
BmiI GGNNCC 3 cut(s) 175, 463, 492
BmrFI CCNGG 4 cut(s) 90, 145, 171, 686
BmrI ACTGGG 1 cut(s) 616
BmsI GCATC 2 cut(s) 25, 47
BmuI ACTGGG 1 cut(s) 616
BpiI GAAGAC 1 cut(s) 197
BplI GAGNNNNNCTC 2 cut(s) 446, 478
BpmI CTGGAG 1 cut(s) 166
Bpu14I TTCGAA 1 cut(s) 585
BpuEI CTTGAG 1 cut(s) 787
BsaAI YACGTR 1 cut(s) 551
BsaJI CCNNGG 3 cut(s) 143, 560, 726
Bsc4I CCNNNNNNNGG 7 cut(s) 81, 170, 390, 408, 471, 566, 691
Bse1I ACTGG 4 cut(s) 242, 340, 433, 611
Bse3DI GCAATG 2 cut(s) 476, 655
BseBI CCWGG 4 cut(s) 90, 145, 171, 686
BseDI CCNNGG 3 cut(s) 143, 560, 726
BseGI GGATG 2 cut(s) 67, 492
BseLI CCNNNNNNNGG 7 cut(s) 81, 170, 390, 408, 471, 566, 691
BseMI GCAATG 2 cut(s) 476, 655
BseNI ACTGG 4 cut(s) 242, 340, 433, 611
BseXI GCAGC 1 cut(s) 72
BsiHKAI GWGCWC 1 cut(s) 192
BslFI GGGAC 1 cut(s) 159
BslI CCNNNNNNNGG 7 cut(s) 81, 170, 390, 408, 471, 566, 691
BsmFI GGGAC 1 cut(s) 159
BsmI GAATGC 1 cut(s) 680
Bsp119I TTCGAA 1 cut(s) 585
Bsp1286I GDGCHC 1 cut(s) 192
Bsp143I GATC 4 cut(s) 64, 379, 490, 619
BspACI CCGC 2 cut(s) 155, 246
BspLI GGNNCC 3 cut(s) 175, 463, 492
BspMAI CTGCAG 1 cut(s) 46
BspPI GGATC 3 cut(s) 374, 485, 498
BspT104I TTCGAA 1 cut(s) 585
BsrDI GCAATG 2 cut(s) 476, 655
BsrI ACTGG 4 cut(s) 242, 340, 433, 611
BssECI CCNNGG 3 cut(s) 143, 560, 726
BssMI GATC 4 cut(s) 64, 379, 490, 619
BssT1I CCWWGG 1 cut(s) 726
Bst2UI CCWGG 4 cut(s) 90, 145, 171, 686
Bst6I CTCTTC 2 cut(s) 285, 707
BstAPI GCANNNNNTGC 1 cut(s) 362
BstBAI YACGTR 1 cut(s) 551
BstBI TTCGAA 1 cut(s) 585
BstC8I GCNNGC 1 cut(s) 763
BstDEI CTNAG 2 cut(s) 131, 347
BstENI CCTNNNNNAGG 2 cut(s) 388, 406
BstF5I GGATG 2 cut(s) 67, 492
BstKTI GATC 4 cut(s) 67, 382, 493, 622
BstMBI GATC 4 cut(s) 64, 379, 490, 619
BstMWI GCNNNNNNNGC 1 cut(s) 362
BstNI CCWGG 4 cut(s) 90, 145, 171, 686
BstNSI RCATGY 1 cut(s) 302
BstSCI CCNGG 4 cut(s) 88, 143, 169, 684
BstSFI CTRYAG 1 cut(s) 42
BstV1I GCAGC 1 cut(s) 72
BstV2I GAAGAC 1 cut(s) 197
BstX2I RGATCY 1 cut(s) 490
BstYI RGATCY 1 cut(s) 490
BtsCI GGATG 2 cut(s) 67, 492
BtsI GCAGTG 2 cut(s) 667, 783
BtsIMutI CAGTG 5 cut(s) 333, 426, 667, 783, 812
Cac8I GCNNGC 1 cut(s) 763
CaiI CAGNNNCTG 2 cut(s) 170, 811
Cfr13I GGNCC 2 cut(s) 173, 240
CsiI ACCWGGT 1 cut(s) 169
Csp6I GTAC 2 cut(s) 47, 412
CviAII CATG 4 cut(s) 299, 415, 451, 780
CviQI GTAC 2 cut(s) 47, 412
DdeI CTNAG 2 cut(s) 131, 347
DpnI GATC 4 cut(s) 66, 381, 492, 621
DpnII GATC 4 cut(s) 64, 379, 490, 619
DraI TTTAAA 1 cut(s) 327
Eam1104I CTCTTC 2 cut(s) 285, 707
EarI CTCTTC 2 cut(s) 285, 707
Ecl136II GAGCTC 1 cut(s) 190
Eco130I CCWWGG 1 cut(s) 726
Eco24I GRGCYC 1 cut(s) 192
Eco47I GGWCC 2 cut(s) 173, 240
Eco53kI GAGCTC 1 cut(s) 190
EcoICRI GAGCTC 1 cut(s) 190
EcoNI CCTNNNNNAGG 2 cut(s) 388, 406
EcoRI GAATTC 1 cut(s) 673
EcoRII CCWGG 4 cut(s) 88, 143, 169, 684
EcoT14I CCWWGG 1 cut(s) 726
EcoT22I ATGCAT 1 cut(s) 40
EcoT38I GRGCYC 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 726
FaeI CATG 4 cut(s) 302, 418, 454, 783
FaqI GGGAC 1 cut(s) 159
FatI CATG 4 cut(s) 298, 414, 450, 779
Fnu4HI GCNGC 1 cut(s) 86
FokI GGATG 2 cut(s) 54, 499
FriOI GRGCYC 1 cut(s) 192
Fsp4HI GCNGC 1 cut(s) 86
GluI GCNGC 1 cut(s) 86
GsuI CTGGAG 1 cut(s) 166
Hin1II CATG 4 cut(s) 302, 418, 454, 783
HinfI GANTC 4 cut(s) 394, 582, 715, 722
HphI GGTGA 2 cut(s) 677, 700
Hpy188I TCNGA 2 cut(s) 229, 813
Hpy188III TCNNGA 4 cut(s) 8, 281, 377, 719
HpyCH4IV ACGT 1 cut(s) 550
HpyCH4V TGCA 9 cut(s) 38, 44, 95, 356, 469, 543, 660, 680, 783
HpyF10VI GCNNNNNNNGC 1 cut(s) 362
HpyF3I CTNAG 2 cut(s) 131, 347
HpySE526I ACGT 1 cut(s) 550
Hsp92II CATG 4 cut(s) 302, 418, 454, 783
Kzo9I GATC 4 cut(s) 64, 379, 490, 619
LmnI GCTCC 1 cut(s) 467
Lsp1109I GCAGC 1 cut(s) 72
LweI GCATC 2 cut(s) 25, 47
MabI ACCWGGT 1 cut(s) 169
MaeII ACGT 1 cut(s) 550
MaeIII GTNAC 1 cut(s) 700
MalI GATC 4 cut(s) 66, 381, 492, 621
MboI GATC 4 cut(s) 64, 379, 490, 619
MboII GAAGA 6 cut(s) 197, 269, 302, 548, 629, 724
MflI RGATCY 1 cut(s) 490
MhlI GDGCHC 1 cut(s) 192
MluCI AATT 7 cut(s) 250, 309, 475, 593, 611, 673, 772
MlyI GAGTC 2 cut(s) 716, 724
MmeI TCCRAC 1 cut(s) 95
MnlI CCTC 4 cut(s) 316, 570, 633, 661
Mph1103I ATGCAT 1 cut(s) 40
MseI TTAA 1 cut(s) 326
MslI CAYNNNNRTG 2 cut(s) 627, 660
MspA1I CMGCKG 1 cut(s) 246
MspR9I CCNGG 4 cut(s) 90, 145, 171, 686
Mva1269I GAATGC 1 cut(s) 680
MvaI CCWGG 4 cut(s) 90, 145, 171, 686
MwoI GCNNNNNNNGC 1 cut(s) 362
NdeII GATC 4 cut(s) 64, 379, 490, 619
NlaIII CATG 4 cut(s) 302, 418, 454, 783
NlaIV GGNNCC 3 cut(s) 175, 463, 492
NsiI ATGCAT 1 cut(s) 40
NspI RCATGY 1 cut(s) 302
NspV TTCGAA 1 cut(s) 585
PctI GAATGC 1 cut(s) 680
PfeI GAWTC 2 cut(s) 394, 582
PflMI CCANNNNNTGG 2 cut(s) 81, 170
PkrI GCNGC 1 cut(s) 87
PleI GAGTC 2 cut(s) 716, 723
PpsI GAGTC 2 cut(s) 716, 723
Ppu21I YACGTR 1 cut(s) 551
Psp124BI GAGCTC 1 cut(s) 192
Psp6I CCWGG 4 cut(s) 88, 143, 169, 684
PspGI CCWGG 4 cut(s) 88, 143, 169, 684
PspN4I GGNNCC 3 cut(s) 175, 463, 492
PspPI GGNCC 2 cut(s) 173, 240
PstI CTGCAG 1 cut(s) 46
PstNI CAGNNNCTG 2 cut(s) 170, 811
PsuI RGATCY 1 cut(s) 490
RsaI GTAC 2 cut(s) 48, 413
RsaNI GTAC 2 cut(s) 47, 412
RseI CAYNNNNRTG 2 cut(s) 627, 660
SacI GAGCTC 1 cut(s) 192
SaqAI TTAA 1 cut(s) 326
SatI GCNGC 1 cut(s) 86
Sau3AI GATC 4 cut(s) 64, 379, 490, 619
Sau96I GGNCC 2 cut(s) 173, 240
ScaI AGTACT 1 cut(s) 48
SchI GAGTC 2 cut(s) 716, 724
ScrFI CCNGG 4 cut(s) 90, 145, 171, 686
SduI GDGCHC 1 cut(s) 192
SexAI ACCWGGT 1 cut(s) 169
SfaNI GCATC 2 cut(s) 25, 47
SfcI CTRYAG 1 cut(s) 42
SfuI TTCGAA 1 cut(s) 585
SinI GGWCC 2 cut(s) 173, 240
SmiMI CAYNNNNRTG 2 cut(s) 627, 660
SmlI CTYRAG 1 cut(s) 766
SmoI CTYRAG 1 cut(s) 766
Sse9I AATT 7 cut(s) 250, 309, 475, 593, 611, 673, 772
SsiI CCGC 2 cut(s) 155, 246
SstI GAGCTC 1 cut(s) 192
StyD4I CCNGG 4 cut(s) 88, 143, 169, 684
StyI CCWWGG 1 cut(s) 726
TaiI ACGT 1 cut(s) 553
TaqI TCGA 3 cut(s) 63, 192, 585
TasI AATT 7 cut(s) 250, 309, 475, 593, 611, 673, 772
TatI WGTACW 1 cut(s) 46
TfiI GAWTC 2 cut(s) 394, 582
Tru1I TTAA 1 cut(s) 326
Tru9I TTAA 1 cut(s) 326
TscAI CASTG 5 cut(s) 340, 433, 667, 790, 812
TseI GCWGC 1 cut(s) 85
TspDTI ATGAA 2 cut(s) 452, 644
TspRI CASTG 5 cut(s) 340, 433, 667, 790, 812
Van91I CCANNNNNTGG 2 cut(s) 81, 170
VpaK11BI GGWCC 2 cut(s) 173, 240
XagI CCTNNNNNAGG 2 cut(s) 388, 406
XapI RAATTY 3 cut(s) 475, 593, 673
XceI RCATGY 1 cut(s) 302
XcmI CCANNNNNNNNNTGG 1 cut(s) 78
ZrmI AGTACT 1 cut(s) 48
Zsp2I ATGCAT 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.