Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000916

Physical Location & Seq

Genomic Coordinates Reverse (-)

43841446 .. 43851335

Gene Structure 9890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG332100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGGTCCAAACACGTTGGCTGGCTTTGAACATAGGTTGACCACAAAGTATTGGAACAGTGGGCCTTGGAATGGCAAATCTTTTGCCCAAGTCCCTGAAATAGAGCGGAACGATCATATAACAAATGTTACTTTTGTTCCAGATGACAAGGGGAGCTATTTTTCTTATGATTCTGCGGACCCTGACACTTATATTAGGTACATGATTGACTTCACTGGGCAGTTCAAGGTCTATATGTGGGGGAAGGGCTTCACCCAGTGGAATTCATTTTGGTTGAGGCCAACCCAATTCTGTGAGGTTTATGGATTTTGTGGTGCTTCTAGCATCTGCCAGCAAAACGCTAGTCTGTGTGTTTGTATGGAGGGATATGAACCTAAAGTCCCAAAAGAGTGGGGATTAGGGGATCACACAGATGGGTGTGTCAGGAAAGCACCTTTAAAATGCATTGCTGGAGTAGATGATACTTTTAAGGTGGTATCTGATGTCCGCCTTCCTGTGAATCCAGAGACTTTAGCAGTTGATAACAGTGATGATTGCAGATTAGCGTGCTTAAGAAATTGCTCATGTACAGCTTTTGCTTATGATAATAGGTGTCTTGTTTGGGGAGGGGATCTATTCAACGTCAAACAATTTACACCAGACGAGAAGGAAGGCAAGGACTTGCATCTGAAAATTTCAGCTTCTGAGAGAATAGAGGGGAAGAAAGAGAACAGGACTCTTTGGATCATCATCGGAGTACTTGGAGGTTATAAGTGGCTGCCCTCCAACTCCACCGGTTACACCCTGCTTCTGTTACGTTTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

268

Amino Acids

30.38

Weight (kDa)

5.85

Isoelectric Point (pI)

27.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S_locus_glycop	PF00954	18 - 126	6e-23	S-locus glycoprotein domain
PAN_2	PF08276	151 - 208	3.8e-14	PAN-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000916)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g26420 FvH4_6g26420 FvH4_6g26450 FvH4_6g26451
malus_domestica	MD09G1116700.v1.1 MD09G1233200.v1.1 MD12G1033500.v1.1 MD14G1034400.v1.1 MD14G1034600.v1.1 MD14G1034700.v1.1 MD14G1034800.v1.1 MD14G1034900.v1.1 MD14G1035200.v1.1 MD17G1090300.v1.1 MD17G1108200.v1.1 MD17G1237700.v1.1 MD17G1237800.v1.1 MD17G1238000.v1.1 MD17G1238400.v1.1
prunus_persica	Prupe.3G131100_v2.0.a1 Prupe.3G141400_v2.0.a1
pyrus_communis	pycom09g04120 pycom12g03080 pycom14g03020 pycom14g03080 pycom14g03090 pycom17g24250
rosa_chinensis	RchiOBHm_Chr2g0127791 RchiOBHm_Chr2g0127811 RchiOBHm_Chr2g0127821 RchiOBHm_Chr2g0128001
rosa_laevigata	RLG00000002113 RLG00000018931 RLG00000018932 RLG00000018933 RLG00000018934 RLG00000023426
rosa_multiflora	Rmu_sc0000516.1_g000026 Rmu_sc0000516.1_g000045 Rmu_ssc0000093.1_g000010 Rmu_ssc0000093.1_g000016 Rmu_ssc0000093.1_g000017 Rmu_ssc0000093.1_g000024
rosa_roxburghii	Rroxscaffold_2G00116790 Rroxscaffold_2G00116800 Rroxscaffold_2G00116810 Rroxscaffold_2G00116840
rosa_rugosa	Rorug02G0270500 Rorug02G0270600 Rorug02G0270800 Rorug02G0270900 Rorug02G0271000
rosa_samantha	Rh2AG323100 Rh2BG332100 Rh2BG332200 Rh2BG332300 Rh2CG310900 Rh2CG311000 Rh2DG350400 Rh2DG350500 Rh2DG350600 Rh2DG350700
rosa_wichuraiana	Rw2G026190 Rw2G026210 Rw2G026230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	750
AccBSI	CCGCTC	1 cut(s)	106
AciI	CCGC	3 cut(s)	106, 176, 487
AclWI	GGATC	3 cut(s)	411, 618, 731
AcsI	RAATTY	2 cut(s)	262, 672
AdeI	CACNNNGTG	1 cut(s)	258
AfaI	GTAC	3 cut(s)	200, 568, 738
AfiI	CCNNNNNNNGG	1 cut(s)	71
AflII	CTTAAG	1 cut(s)	550
AflIII	ACRYGT	1 cut(s)	12
AgeI	ACCGGT	1 cut(s)	773
AgsI	TTSAA	3 cut(s)	29, 226, 619
AloI	GAACNNNNNNTCC	2 cut(s)	363, 395
AluBI	AGCT	3 cut(s)	156, 572, 680
AluI	AGCT	3 cut(s)	156, 572, 680
Alw26I	GTCTC	1 cut(s)	500
AlwI	GGATC	3 cut(s)	411, 618, 731
AlwNI	CAGNNNCTG	1 cut(s)	683
AoxI	GGCC	2 cut(s)	62, 278
ApeKI	GCWGC	1 cut(s)	757
ApoI	RAATTY	2 cut(s)	262, 672
ArsI	GACNNNNNNTTYG	2 cut(s)	328, 360
AsiGI	ACCGGT	1 cut(s)	773
Asp700I	GAANNNNTTC	1 cut(s)	248
AspS9I	GGNCC	3 cut(s)	5, 62, 178
AsuHPI	GGTGA	1 cut(s)	244
AvaII	GGWCC	2 cut(s)	5, 178
BbvI	GCAGC	1 cut(s)	744
BccI	CCATC	1 cut(s)	407
BcoDI	GTCTC	1 cut(s)	500
BfaI	CTAG	2 cut(s)	321, 342
BfrI	CTTAAG	1 cut(s)	550
BisI	GCNGC	1 cut(s)	758
BlsI	GCNGC	1 cut(s)	759
BmcAI	AGTACT	1 cut(s)	738
Bme18I	GGWCC	2 cut(s)	5, 178
BmgT120I	GGNCC	3 cut(s)	5, 62, 178
BmiI	GGNNCC	2 cut(s)	6, 180
BmrI	ACTGGG	2 cut(s)	225, 250
BmsI	GCATC	2 cut(s)	333, 673
BmuI	ACTGGG	2 cut(s)	225, 250
BpmI	CTGGAG	1 cut(s)	471
BsaBI	GATNNNNATC	1 cut(s)	728
BsaJI	CCNNGG	1 cut(s)	65
BsaWI	WCCGGW	1 cut(s)	773
Bsc4I	CCNNNNNNNGG	1 cut(s)	71
Bse118I	RCCGGY	1 cut(s)	773
Bse1I	ACTGG	2 cut(s)	220, 256
Bse3DI	GCAATG	1 cut(s)	444
Bse8I	GATNNNNATC	1 cut(s)	728
BseDI	CCNNGG	1 cut(s)	65
BseJI	GATNNNNATC	1 cut(s)	728
BseLI	CCNNNNNNNGG	1 cut(s)	71
BseMI	GCAATG	1 cut(s)	444
BseMII	CTCAG	1 cut(s)	675
BseNI	ACTGG	2 cut(s)	220, 256
BseXI	GCAGC	1 cut(s)	744
BshFI	GGCC	2 cut(s)	64, 280
BshTI	ACCGGT	1 cut(s)	773
BsiSI	CCGG	1 cut(s)	774
BslFI	GGGAC	2 cut(s)	77, 365
BslI	CCNNNNNNNGG	1 cut(s)	71
BsmAI	GTCTC	1 cut(s)	500
BsmFI	GGGAC	2 cut(s)	77, 365
BsnI	GGCC	2 cut(s)	64, 280
Bsp1407I	TGTACA	1 cut(s)	566
Bsp143I	GATC	4 cut(s)	112, 403, 610, 723
BspACI	CCGC	3 cut(s)	106, 176, 487
BspANI	GGCC	2 cut(s)	64, 280
BspCNI	CTCAG	1 cut(s)	676
BspLI	GGNNCC	2 cut(s)	6, 180
BspPI	GGATC	3 cut(s)	411, 618, 731
BspTI	CTTAAG	1 cut(s)	550
BsrBI	CCGCTC	1 cut(s)	106
BsrDI	GCAATG	1 cut(s)	444
BsrFI	RCCGGY	1 cut(s)	773
BsrGI	TGTACA	1 cut(s)	566
BsrI	ACTGG	2 cut(s)	220, 256
BssAI	RCCGGY	1 cut(s)	773
BssECI	CCNNGG	1 cut(s)	65
BssMI	GATC	4 cut(s)	112, 403, 610, 723
BssT1I	CCWWGG	1 cut(s)	65
Bst4CI	ACNGT	2 cut(s)	59, 527
BstAFI	CTTAAG	1 cut(s)	550
BstAUI	TGTACA	1 cut(s)	566
BstC8I	GCNNGC	3 cut(s)	22, 332, 547
BstDEI	CTNAG	1 cut(s)	684
BstKTI	GATC	4 cut(s)	115, 406, 613, 726
BstMAI	GTCTC	1 cut(s)	500
BstMBI	GATC	4 cut(s)	112, 403, 610, 723
BstV1I	GCAGC	1 cut(s)	744
BstX2I	RGATCY	1 cut(s)	610
BstXI	CCANNNNNNTGG	1 cut(s)	390
BstYI	RGATCY	1 cut(s)	610
BsuRI	GGCC	2 cut(s)	64, 280
BtsIMutI	CAGTG	4 cut(s)	64, 213, 263, 532
Cac8I	GCNNGC	3 cut(s)	22, 332, 547
CaiI	CAGNNNCTG	1 cut(s)	683
Cfr10I	RCCGGY	1 cut(s)	773
Cfr13I	GGNCC	3 cut(s)	5, 62, 178
Csp6I	GTAC	3 cut(s)	199, 567, 737
CspAI	ACCGGT	1 cut(s)	773
CviAII	CATG	2 cut(s)	202, 564
CviJI	RGCY	9 cut(s)	20, 24, 64, 156, 249, 280, 572, 680, 757
CviKI_1	RGCY	9 cut(s)	20, 24, 64, 156, 249, 280, 572, 680, 757
CviQI	GTAC	3 cut(s)	199, 567, 737
DdeI	CTNAG	1 cut(s)	684
DpnI	GATC	4 cut(s)	114, 405, 612, 725
DpnII	GATC	4 cut(s)	112, 403, 610, 723
DraI	TTTAAA	1 cut(s)	438
DraIII	CACNNNGTG	1 cut(s)	258
EciI	GGCGGA	1 cut(s)	476
Eco130I	CCWWGG	1 cut(s)	65
Eco47I	GGWCC	2 cut(s)	5, 178
EcoRI	GAATTC	1 cut(s)	262
EcoT14I	CCWWGG	1 cut(s)	65
EcoT22I	ATGCAT	1 cut(s)	446
ErhI	CCWWGG	1 cut(s)	65
FaeI	CATG	2 cut(s)	205, 567
FaqI	GGGAC	2 cut(s)	77, 365
FatI	CATG	2 cut(s)	201, 563
Fnu4HI	GCNGC	1 cut(s)	758
Fsp4HI	GCNGC	1 cut(s)	758
FspBI	CTAG	2 cut(s)	321, 342
GluI	GCNGC	1 cut(s)	758
GsuI	CTGGAG	1 cut(s)	471
HaeIII	GGCC	2 cut(s)	64, 280
HapII	CCGG	1 cut(s)	774
Hin1II	CATG	2 cut(s)	205, 567
HincII	GTYRAC	1 cut(s)	39
HindII	GTYRAC	1 cut(s)	39
HinfI	GANTC	3 cut(s)	170, 499, 715
HpaII	CCGG	1 cut(s)	774
HphI	GGTGA	1 cut(s)	244
Hpy166II	GTNNAC	1 cut(s)	39
Hpy188I	TCNGA	4 cut(s)	481, 669, 685, 734
Hpy188III	TCNNGA	3 cut(s)	140, 424, 503
Hpy8I	GTNNAC	1 cut(s)	39
HpyAV	CCTTC	4 cut(s)	238, 500, 640, 644
HpyCH4III	ACNGT	2 cut(s)	59, 527
HpyCH4IV	ACGT	3 cut(s)	14, 621, 796
HpyCH4V	TGCA	3 cut(s)	444, 537, 664
HpyF3I	CTNAG	1 cut(s)	684
HpySE526I	ACGT	3 cut(s)	14, 621, 796
Hsp92II	CATG	2 cut(s)	205, 567
Kzo9I	GATC	4 cut(s)	112, 403, 610, 723
LmnI	GCTCC	1 cut(s)	153
Lsp1109I	GCAGC	1 cut(s)	744
LweI	GCATC	2 cut(s)	333, 673
MaeI	CTAG	2 cut(s)	321, 342
MaeII	ACGT	3 cut(s)	14, 621, 796
MaeIII	GTNAC	3 cut(s)	127, 776, 792
MalI	GATC	4 cut(s)	114, 405, 612, 725
MbiI	CCGCTC	1 cut(s)	106
MboI	GATC	4 cut(s)	112, 403, 610, 723
MboII	GAAGA	1 cut(s)	712
MflI	RGATCY	1 cut(s)	610
MluCI	AATT	6 cut(s)	262, 287, 556, 629, 672, 802
MlyI	GAGTC	1 cut(s)	709
MmeI	TCCRAC	1 cut(s)	789
MnlI	CCTC	7 cut(s)	270, 289, 355, 599, 688, 737, 772
Mph1103I	ATGCAT	1 cut(s)	446
MroXI	GAANNNNTTC	1 cut(s)	248
MseI	TTAA	5 cut(s)	437, 468, 551, 801, 805
MslI	CAYNNNNRTG	1 cut(s)	411
MspCI	CTTAAG	1 cut(s)	550
MspI	CCGG	1 cut(s)	774
NdeII	GATC	4 cut(s)	112, 403, 610, 723
NlaIII	CATG	2 cut(s)	205, 567
NlaIV	GGNNCC	2 cut(s)	6, 180
NsiI	ATGCAT	1 cut(s)	446
PacI	TTAATTAA	1 cut(s)	805
PdmI	GAANNNNTTC	1 cut(s)	248
PfeI	GAWTC	2 cut(s)	170, 499
PinAI	ACCGGT	1 cut(s)	773
PkrI	GCNGC	1 cut(s)	759
PleI	GAGTC	1 cut(s)	709
PpsI	GAGTC	1 cut(s)	709
PsiI	TTATAA	1 cut(s)	750
PspN4I	GGNNCC	2 cut(s)	6, 180
PspPI	GGNCC	3 cut(s)	5, 62, 178
PstNI	CAGNNNCTG	1 cut(s)	683
PsuI	RGATCY	1 cut(s)	610
RsaI	GTAC	3 cut(s)	200, 568, 738
RsaNI	GTAC	3 cut(s)	199, 567, 737
RseI	CAYNNNNRTG	1 cut(s)	411
SaqAI	TTAA	5 cut(s)	437, 468, 551, 801, 805
SatI	GCNGC	1 cut(s)	758
Sau3AI	GATC	4 cut(s)	112, 403, 610, 723
Sau96I	GGNCC	3 cut(s)	5, 62, 178
ScaI	AGTACT	1 cut(s)	738
SchI	GAGTC	1 cut(s)	709
SfaNI	GCATC	2 cut(s)	333, 673
SinI	GGWCC	2 cut(s)	5, 178
SmiMI	CAYNNNNRTG	1 cut(s)	411
SmlI	CTYRAG	1 cut(s)	550
SmoI	CTYRAG	1 cut(s)	550
Sse9I	AATT	6 cut(s)	262, 287, 556, 629, 672, 802
SsiI	CCGC	3 cut(s)	106, 176, 487
SspMI	CTAG	2 cut(s)	321, 342
StyI	CCWWGG	1 cut(s)	65
TaaI	ACNGT	2 cut(s)	59, 527
TaiI	ACGT	3 cut(s)	17, 624, 799
TasI	AATT	6 cut(s)	262, 287, 556, 629, 672, 802
TatI	WGTACW	2 cut(s)	566, 736
TfiI	GAWTC	2 cut(s)	170, 499
Tru1I	TTAA	5 cut(s)	437, 468, 551, 801, 805
Tru9I	TTAA	5 cut(s)	437, 468, 551, 801, 805
TscAI	CASTG	4 cut(s)	64, 220, 263, 532
TseI	GCWGC	1 cut(s)	757
TspDTI	ATGAA	2 cut(s)	255, 384
TspRI	CASTG	4 cut(s)	64, 220, 263, 532
Vha464I	CTTAAG	1 cut(s)	550
VpaK11BI	GGWCC	2 cut(s)	5, 178
XapI	RAATTY	2 cut(s)	262, 672
XmnI	GAANNNNTTC	1 cut(s)	248
XspI	CTAG	2 cut(s)	321, 342
ZrmI	AGTACT	1 cut(s)	738
Zsp2I	ATGCAT	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.