pycom14g03080

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0000916
Physical Location & Seq
Reverse (-)
2380604 .. 2381692
1089 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g03080.1

Sequence Viewer

Length: 1089 bp
ATGGTATTTTTTAGAAGGAGATGGTCAGCGGGAGCATTGGCGACTATCGAAGATTCTTTGGTGCTTTACAAGCATAGAGATTTAAGAAGAGCAACAAAGAACTTCTCCCAAAAGCTCGGGGAAGGAGCCTTTGGTTCTGTATTCAAGGGGATGTTGCCTCATTCAACAGCCATTGCAGTGAAAGAGCTGAAAAGTATGAACCAGGGAGAGAAACAATTTCGTGCTGAAGTGGGAACTATCGGTGTAATACAACACATTAATCTTATTCGCATGCGGGGATTCTGCGCTAACGCTTCAAAGAGGTTTTTGGTTTATGACTACATGCCAAATGGTTCTCTACAATCTCTTCTACTTGGAAACAACCCGATAATGTTAGATTGGAAGGCTAGATATCACATTGCAGTAGGGACTGCCAGAGGATTGGCTTACCTCCATGACGAGTGCAGAGACTGCATAATACACTGCGATGTTAAGCCGGAGAACATCTTGTTGGATTCAGAATACAGTCCCAAATTGGCAGATTTTGGTCTTGCGAAACTCTTGGGGAGACACCACAGTCGGGTTTTGACAACCATGAGAGGAACTGTGGGTTATCTCGCACCAGAATGGTTTTCGGGTGAAGCCATCACACCAAAAGCCGATGTGTTGAGCTATGGCATGTTGCTGATTGAGGTCATATCAGGAAGGAGAAACAGAGAAGGGTTAGATGACGGAGTAGAAAACTTCCGTCCCATCCGTCTCACGAATGCAGTTAATAAAGGGCACGATCTTTTCGCCTTGTTAGATTGCAGGTTGGAAGGCCAAGCTGACGGAGATGAACTAAGCAGAGTATGCAAAGTGGCTTGTTGGTGCATTCAAGAAGCTGAGAAGGATAGGCCAACAATGAAGCAGGTGGTTCAAATTCTTGAGGGAGTTTCGGACATCGGTGTTCCGCCAGTCCCGCAGTTCCTCCAGCGCCTTATCGGAGGTTCGTCAGAAGGCATTAACAACCAGGAGACCACATCCGGTTCGGGTTCATGGTCATGCTCCGATGTCCAAAGTGCATTTCAAGCTCAAGTCAGCAACTGTGCATTTCAACCCAATCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase S_locus_glycop

Protein Analysis

363

Amino Acids

40.19

Weight (kDa)

8.29

Isoelectric Point (pI)

43.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 35 - 302 2.5e-40 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 36 - 300 4.6e-47 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 880
AasI GACNNNNNNGTC 1 cut(s) 555
Acc36I ACCTGC 2 cut(s) 780, 880
AciI CCGC 4 cut(s) 29, 274, 932, 941
AcsI RAATTY 1 cut(s) 900
AcuI CTGAAG 1 cut(s) 246
AfiI CCNNNNNNNGG 1 cut(s) 559
AgsI TTSAA 7 cut(s) 145, 165, 297, 857, 899, 1049, 1076
AjnI CCWGG 2 cut(s) 201, 990
AjuI GAANNNNNNNTTGG 6 cut(s) 114, 146, 473, 505, 1029, 1061
AluBI AGCT 6 cut(s) 115, 187, 651, 806, 863, 1052
AluI AGCT 6 cut(s) 115, 187, 651, 806, 863, 1052
Alw26I GTCTC 4 cut(s) 441, 541, 743, 989
AlwNI CAGNNNCTG 2 cut(s) 450, 1065
Ama87I CYCGRG 1 cut(s) 116
AoxI GGCC 2 cut(s) 799, 875
ApoI RAATTY 1 cut(s) 900
AseI ATTAAT 1 cut(s) 258
AspLEI GCGC 2 cut(s) 287, 957
AsuHPI GGTGA 1 cut(s) 629
AvaI CYCGRG 1 cut(s) 116
BaeGI GKGCMC 1 cut(s) 765
BccI CCATC 3 cut(s) 15, 632, 740
BciT130I CCWGG 2 cut(s) 203, 992
BcoDI GTCTC 4 cut(s) 441, 541, 743, 989
BfaI CTAG 1 cut(s) 387
BfoI RGCGCY 1 cut(s) 958
BfuAI ACCTGC 2 cut(s) 780, 880
Bme1390I CCNGG 2 cut(s) 203, 992
BmeT110I CYCGRG 1 cut(s) 116
BmiI GGNNCC 1 cut(s) 127
BmrFI CCNGG 2 cut(s) 203, 992
BpmI CTGGAG 1 cut(s) 935
BpuEI CTTGAG 2 cut(s) 926, 1038
BsaI GGTCTC 1 cut(s) 989
BsaJI CCNNGG 1 cut(s) 202
BsaWI WCCGGW 1 cut(s) 1004
Bsc4I CCNNNNNNNGG 1 cut(s) 559
Bse1I ACTGG 1 cut(s) 935
Bse3DI GCAATG 2 cut(s) 171, 396
BseBI CCWGG 2 cut(s) 203, 992
BseDI CCNNGG 1 cut(s) 202
BseGI GGATG 3 cut(s) 156, 732, 1001
BseLI CCNNNNNNNGG 1 cut(s) 559
BseMI GCAATG 2 cut(s) 171, 396
BseMII CTCAG 1 cut(s) 855
BseNI ACTGG 1 cut(s) 935
BseSI GKGCMC 1 cut(s) 765
BsgI GTGCAG 1 cut(s) 463
BshFI GGCC 2 cut(s) 801, 877
BsiHKCI CYCGRG 1 cut(s) 116
BsiSI CCGG 2 cut(s) 476, 1005
BslFI GGGAC 4 cut(s) 421, 492, 714, 923
BslI CCNNNNNNNGG 1 cut(s) 559
BsmAI GTCTC 4 cut(s) 441, 541, 743, 989
BsmBI CGTCTC 1 cut(s) 743
BsmFI GGGAC 4 cut(s) 421, 492, 714, 923
BsmI GAATGC 2 cut(s) 751, 852
BsnI GGCC 2 cut(s) 801, 877
Bso31I GGTCTC 1 cut(s) 989
BsoBI CYCGRG 1 cut(s) 116
Bsp1286I GDGCHC 1 cut(s) 765
Bsp143I GATC 1 cut(s) 766
BspACI CCGC 4 cut(s) 29, 274, 932, 941
BspANI GGCC 2 cut(s) 801, 877
BspCNI CTCAG 1 cut(s) 856
BspLI GGNNCC 1 cut(s) 127
BspMI ACCTGC 2 cut(s) 780, 880
BspQI GCTCTTC 1 cut(s) 82
BspTNI GGTCTC 1 cut(s) 989
BsrDI GCAATG 2 cut(s) 171, 396
BsrI ACTGG 1 cut(s) 935
BssECI CCNNGG 1 cut(s) 202
BssMI GATC 1 cut(s) 766
Bst2UI CCWGG 2 cut(s) 203, 992
Bst4CI ACNGT 4 cut(s) 506, 557, 586, 1067
Bst6I CTCTTC 2 cut(s) 82, 351
BstAPI GCANNNNNTGC 2 cut(s) 450, 831
BstC8I GCNNGC 1 cut(s) 272
BstDEI CTNAG 2 cut(s) 821, 864
BstF5I GGATG 3 cut(s) 156, 732, 1001
BstH2I RGCGCY 1 cut(s) 958
BstHHI GCGC 2 cut(s) 287, 957
BstKTI GATC 1 cut(s) 769
BstMAI GTCTC 4 cut(s) 441, 541, 743, 989
BstMBI GATC 1 cut(s) 766
BstMWI GCNNNNNNNGC 5 cut(s) 70, 450, 831, 940, 1049
BstNI CCWGG 2 cut(s) 203, 992
BstNSI RCATGY 3 cut(s) 274, 325, 661
BstSCI CCNGG 2 cut(s) 201, 990
BstSLI GKGCMC 1 cut(s) 765
BstXI CCANNNNNNTGG 1 cut(s) 421
BsuRI GGCC 2 cut(s) 801, 877
BtgZI GCGATG 1 cut(s) 480
BtsCI GGATG 3 cut(s) 156, 732, 1001
BtsI GCAGTG 2 cut(s) 183, 460
BtsIMutI CAGTG 2 cut(s) 183, 460
BveI ACCTGC 2 cut(s) 780, 880
Cac8I GCNNGC 1 cut(s) 272
CaiI CAGNNNCTG 2 cut(s) 450, 1065
CfoI GCGC 2 cut(s) 287, 957
CviAII CATG 7 cut(s) 271, 322, 434, 574, 658, 1017, 1023
DdeI CTNAG 2 cut(s) 821, 864
DpnI GATC 1 cut(s) 768
DpnII GATC 1 cut(s) 766
DrdI GACNNNNNNGTC 1 cut(s) 555
DseDI GACNNNNNNGTC 1 cut(s) 555
Eam1104I CTCTTC 2 cut(s) 82, 351
EarI CTCTTC 2 cut(s) 82, 351
EciI GGCGGA 1 cut(s) 921
Eco31I GGTCTC 1 cut(s) 989
Eco32I GATATC 1 cut(s) 392
Eco57I CTGAAG 1 cut(s) 246
Eco88I CYCGRG 1 cut(s) 116
EcoRII CCWGG 2 cut(s) 201, 990
EcoRV GATATC 1 cut(s) 392
Esp3I CGTCTC 1 cut(s) 743
FaeI CATG 7 cut(s) 274, 325, 437, 577, 661, 1020, 1026
FaqI GGGAC 4 cut(s) 421, 492, 714, 923
FatI CATG 7 cut(s) 270, 321, 433, 573, 657, 1016, 1022
FauI CCCGC 3 cut(s) 22, 267, 948
FokI GGATG 3 cut(s) 163, 719, 988
FspBI CTAG 1 cut(s) 387
GlaI GCGC 2 cut(s) 286, 956
GsuI CTGGAG 1 cut(s) 935
HaeII RGCGCY 1 cut(s) 958
HaeIII GGCC 2 cut(s) 801, 877
HapII CCGG 2 cut(s) 476, 1005
HhaI GCGC 2 cut(s) 287, 957
Hin1II CATG 7 cut(s) 274, 325, 437, 577, 661, 1020, 1026
Hin6I GCGC 2 cut(s) 285, 955
HinP1I GCGC 2 cut(s) 285, 955
HinfI GANTC 3 cut(s) 53, 279, 494
HpaII CCGG 2 cut(s) 476, 1005
HphI GGTGA 1 cut(s) 629
Hpy188I TCNGA 5 cut(s) 499, 919, 965, 976, 1030
Hpy188III TCNNGA 4 cut(s) 681, 742, 857, 905
HpyAV CCTTC 8 cut(s) 9, 116, 376, 678, 692, 791, 862, 971
HpyCH4III ACNGT 4 cut(s) 506, 557, 586, 1067
HpyF10VI GCNNNNNNNGC 5 cut(s) 70, 450, 831, 940, 1049
HpyF3I CTNAG 2 cut(s) 821, 864
Hsp92II CATG 7 cut(s) 274, 325, 437, 577, 661, 1020, 1026
HspAI GCGC 2 cut(s) 285, 955
Kzo9I GATC 1 cut(s) 766
LguI GCTCTTC 1 cut(s) 82
LmnI GCTCC 3 cut(s) 32, 125, 1031
MaeI CTAG 1 cut(s) 387
MalI GATC 1 cut(s) 768
MboI GATC 1 cut(s) 766
MboII GAAGA 3 cut(s) 62, 99, 338
MhlI GDGCHC 1 cut(s) 765
MluCI AATT 3 cut(s) 215, 512, 900
MmeI TCCRAC 2 cut(s) 471, 774
MnlI CCTC 9 cut(s) 168, 294, 410, 440, 572, 664, 901, 959, 959
MseI TTAA 6 cut(s) 83, 258, 471, 753, 984, 1087
MslI CAYNNNNRTG 4 cut(s) 176, 465, 604, 1021
MspA1I CMGCKG 1 cut(s) 29
MspI CCGG 2 cut(s) 476, 1005
MspR9I CCNGG 2 cut(s) 203, 992
Mva1269I GAATGC 2 cut(s) 751, 852
MvaI CCWGG 2 cut(s) 203, 992
MwoI GCNNNNNNNGC 5 cut(s) 70, 450, 831, 940, 1049
NdeII GATC 1 cut(s) 766
NlaIII CATG 7 cut(s) 274, 325, 437, 577, 661, 1020, 1026
NlaIV GGNNCC 1 cut(s) 127
NspI RCATGY 3 cut(s) 274, 325, 661
PaeI GCATGC 1 cut(s) 274
PaqCI CACCTGC 1 cut(s) 880
PciSI GCTCTTC 1 cut(s) 82
PctI GAATGC 2 cut(s) 751, 852
PfeI GAWTC 3 cut(s) 53, 279, 494
PshBI ATTAAT 1 cut(s) 258
Psp6I CCWGG 2 cut(s) 201, 990
PspGI CCWGG 2 cut(s) 201, 990
PspN4I GGNNCC 1 cut(s) 127
PstNI CAGNNNCTG 2 cut(s) 450, 1065
RseI CAYNNNNRTG 4 cut(s) 176, 465, 604, 1021
SapI GCTCTTC 1 cut(s) 82
SaqAI TTAA 6 cut(s) 83, 258, 471, 753, 984, 1087
Sau3AI GATC 1 cut(s) 766
ScrFI CCNGG 2 cut(s) 203, 992
SduI GDGCHC 1 cut(s) 765
SmiMI CAYNNNNRTG 4 cut(s) 176, 465, 604, 1021
SmlI CTYRAG 2 cut(s) 905, 1053
SmoI CTYRAG 2 cut(s) 905, 1053
SphI GCATGC 1 cut(s) 274
Sse9I AATT 3 cut(s) 215, 512, 900
SsiI CCGC 4 cut(s) 29, 274, 932, 941
SspMI CTAG 1 cut(s) 387
StyD4I CCNGG 2 cut(s) 201, 990
TaaI ACNGT 4 cut(s) 506, 557, 586, 1067
TaqI TCGA 1 cut(s) 48
TasI AATT 3 cut(s) 215, 512, 900
TfiI GAWTC 3 cut(s) 53, 279, 494
Tru1I TTAA 6 cut(s) 83, 258, 471, 753, 984, 1087
Tru9I TTAA 6 cut(s) 83, 258, 471, 753, 984, 1087
TscAI CASTG 2 cut(s) 183, 467
TspDTI ATGAA 4 cut(s) 212, 831, 899, 1005
TspGWI ACGGA 4 cut(s) 716, 725, 726, 825
TspRI CASTG 2 cut(s) 183, 467
VspI ATTAAT 1 cut(s) 258
XapI RAATTY 1 cut(s) 900
XceI RCATGY 3 cut(s) 274, 325, 661
XspI CTAG 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.