MD17G1237800.v1.1

G-type lectin S-receptor-like serine threonine-protein kinase At2g19130

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Forward (+)
28720435 .. 28720866
432 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1237800.v1.1.491

Sequence Viewer

Length: 432 bp
ATGCCAAATGGTTCTCTAGAATCTCTTTTGTTCCAGAAGAGTCCGATCGTCTTGAATTGGAAAACTGGATATCACATTGCAGTTGGGACTGCAAGAGGACTTGCATATCTTCATCATAGTTGCAGAAAATGCATCATACACTGTGACATCAAACCTGAAAACATTCTGTTGGATGCAGAATATGCCCCCAAAATAGCTGATTTTGGTCTTGCAAAGCTCGTGAGCAGAGACTTCAGCCGGATAATTACAACCATGCAAGGACAAGAGGGTATATTGCTCCGGAATGGATATCAGGAGAAGCTATCACAGCAAAAGCCGATGTCTTTAGCTACGGAATGTTGTGTTTTGAGATCATATCAGGAAGGAGAAACAGAGATCTTTTGGATGATGGATTGCAAAACTAGTTCCCCACTCGCGTTGCAAATGTATTAA

Protein Analysis

144

Amino Acids

16.19

Weight (kDa)

7.61

Isoelectric Point (pI)

57.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 1 - 79 2.7e-15 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 1 - 77 6.7e-11 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 416
AccIII TCCGGA 1 cut(s) 279
AcuI CTGAAG 1 cut(s) 217
AgsI TTSAA 1 cut(s) 55
AhlI ACTAGT 1 cut(s) 401
AluBI AGCT 4 cut(s) 197, 217, 301, 329
AluI AGCT 4 cut(s) 197, 217, 301, 329
Alw26I GTCTC 1 cut(s) 222
Aor13HI TCCGGA 1 cut(s) 279
Asp700I GAANNNNTTC 1 cut(s) 162
BauI CACGAG 1 cut(s) 218
BccI CCATC 1 cut(s) 382
BcoDI GTCTC 1 cut(s) 222
BcuI ACTAGT 1 cut(s) 401
BfaI CTAG 2 cut(s) 17, 402
BglII AGATCT 1 cut(s) 375
BmsI GCATC 2 cut(s) 141, 163
BsaWI WCCGGW 1 cut(s) 279
Bse1I ACTGG 1 cut(s) 70
Bse3DI GCAATG 1 cut(s) 75
BseAI TCCGGA 1 cut(s) 279
BseGI GGATG 2 cut(s) 178, 390
BseMI GCAATG 1 cut(s) 75
BseNI ACTGG 1 cut(s) 70
Bsh1236I CGCG 1 cut(s) 416
Bsh1285I CGRYCG 1 cut(s) 48
BsiEI CGRYCG 1 cut(s) 48
BsiSI CCGG 2 cut(s) 238, 280
BslFI GGGAC 1 cut(s) 100
BsmAI GTCTC 1 cut(s) 222
BsmFI GGGAC 1 cut(s) 100
Bsp13I TCCGGA 1 cut(s) 279
Bsp143I GATC 3 cut(s) 45, 350, 375
BspEI TCCGGA 1 cut(s) 279
BspFNI CGCG 1 cut(s) 416
BsrDI GCAATG 1 cut(s) 75
BsrI ACTGG 1 cut(s) 70
BssMI GATC 3 cut(s) 45, 350, 375
BssSI CACGAG 1 cut(s) 218
Bst2BI CACGAG 1 cut(s) 218
Bst4CI ACNGT 1 cut(s) 143
Bst6I CTCTTC 1 cut(s) 32
BstAPI GCANNNNNTGC 2 cut(s) 129, 182
BstF5I GGATG 2 cut(s) 178, 390
BstFNI CGCG 1 cut(s) 416
BstKTI GATC 3 cut(s) 48, 353, 378
BstMAI GTCTC 1 cut(s) 222
BstMBI GATC 3 cut(s) 45, 350, 375
BstMCI CGRYCG 1 cut(s) 48
BstMWI GCNNNNNNNGC 3 cut(s) 129, 182, 307
BstUI CGCG 1 cut(s) 416
BstX2I RGATCY 1 cut(s) 375
BstYI RGATCY 1 cut(s) 375
BtsCI GGATG 2 cut(s) 178, 390
BtsIMutI CAGTG 1 cut(s) 139
CspCI CAANNNNNGTGG 1 cut(s) 399
CviAII CATG 1 cut(s) 253
CviJI RGCY 6 cut(s) 197, 217, 237, 301, 316, 329
CviKI_1 RGCY 6 cut(s) 197, 217, 237, 301, 316, 329
DpnI GATC 3 cut(s) 47, 352, 377
DpnII GATC 3 cut(s) 45, 350, 375
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
Eco32I GATATC 2 cut(s) 71, 290
Eco57I CTGAAG 1 cut(s) 217
EcoRV GATATC 2 cut(s) 71, 290
EcoT22I ATGCAT 1 cut(s) 134
FaeI CATG 1 cut(s) 256
FaiI YATR 7 cut(s) 106, 117, 137, 183, 254, 272, 355
FaqI GGGAC 1 cut(s) 100
FatI CATG 1 cut(s) 252
FokI GGATG 2 cut(s) 185, 397
FspBI CTAG 2 cut(s) 17, 402
HapII CCGG 2 cut(s) 238, 280
Hin1II CATG 1 cut(s) 256
HinfI GANTC 2 cut(s) 20, 40
HpaII CCGG 2 cut(s) 238, 280
Hpy188I TCNGA 1 cut(s) 45
Hpy188III TCNNGA 7 cut(s) 17, 34, 52, 220, 280, 293, 359
HpyAV CCTTC 1 cut(s) 356
HpyCH4III ACNGT 1 cut(s) 143
HpyF10VI GCNNNNNNNGC 3 cut(s) 129, 182, 307
Hsp92II CATG 1 cut(s) 256
Kpn2I TCCGGA 1 cut(s) 279
Kzo9I GATC 3 cut(s) 45, 350, 375
LmnI GCTCC 1 cut(s) 282
LpnPI CCDG 7 cut(s) 47, 51, 168, 251, 278, 293, 344
LweI GCATC 2 cut(s) 141, 163
MaeI CTAG 2 cut(s) 17, 402
MaeIII GTNAC 1 cut(s) 143
MalI GATC 3 cut(s) 47, 352, 377
MboI GATC 3 cut(s) 45, 350, 375
MboII GAAGA 2 cut(s) 49, 101
MflI RGATCY 1 cut(s) 375
MluCI AATT 2 cut(s) 55, 243
MlyI GAGTC 1 cut(s) 49
MmeI TCCRAC 1 cut(s) 150
MnlI CCTC 2 cut(s) 89, 259
Mph1103I ATGCAT 1 cut(s) 134
MroI TCCGGA 1 cut(s) 279
MroXI GAANNNNTTC 1 cut(s) 162
MseI TTAA 1 cut(s) 430
MspI CCGG 2 cut(s) 238, 280
MvnI CGCG 1 cut(s) 416
MwoI GCNNNNNNNGC 3 cut(s) 129, 182, 307
NdeII GATC 3 cut(s) 45, 350, 375
NlaIII CATG 1 cut(s) 256
NmuCI GTSAC 1 cut(s) 143
NsiI ATGCAT 1 cut(s) 134
PdmI GAANNNNTTC 1 cut(s) 162
PfeI GAWTC 1 cut(s) 20
Ple19I CGATCG 1 cut(s) 48
PleI GAGTC 1 cut(s) 48
PpsI GAGTC 1 cut(s) 48
PsuI RGATCY 1 cut(s) 375
PvuI CGATCG 1 cut(s) 48
SaqAI TTAA 1 cut(s) 430
Sau3AI GATC 3 cut(s) 45, 350, 375
SchI GAGTC 1 cut(s) 49
SetI ASST 5 cut(s) 157, 199, 219, 303, 331
SfaNI GCATC 2 cut(s) 141, 163
SpeI ACTAGT 1 cut(s) 401
Sse9I AATT 2 cut(s) 55, 243
SspMI CTAG 2 cut(s) 17, 402
TaaI ACNGT 1 cut(s) 143
TasI AATT 2 cut(s) 55, 243
TfiI GAWTC 1 cut(s) 20
Tru1I TTAA 1 cut(s) 430
Tru9I TTAA 1 cut(s) 430
TscAI CASTG 1 cut(s) 146
TseFI GTSAC 1 cut(s) 143
Tsp45I GTSAC 1 cut(s) 143
TspDTI ATGAA 1 cut(s) 101
TspGWI ACGGA 1 cut(s) 347
TspRI CASTG 1 cut(s) 146
XbaI TCTAGA 1 cut(s) 16
XmnI GAANNNNTTC 1 cut(s) 162
XspI CTAG 2 cut(s) 17, 402
Zsp2I ATGCAT 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.