Rh2BG332200

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000916
Physical Location & Seq
Reverse (-)
43926123 .. 43926449
327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG332200.1

Sequence Viewer

Length: 327 bp
ATGGATAATGTTACTTACCCGAAGAGTCCCAACTCCTTGGTAGTTGATAACATTGACAAATGTAGATTAGCTTGCTTGAGAAATTGCTCATGCACTGCTTTTGCTTATGATAATCAGTGTCTGATTTTGGGAGGTGATCTAGTTAATGTAAAGCAACTATCATCTGATGGAATGATAGGAAAAGTTTGGTATCTACGAGTAGCAGCATCTAAGAAGGATCAAATAATAGATTCTGGGAGTAGAAAGAGGAAGACTACTTGGATTGTGGTTGGAGTACTTGCAGGCATCGTTACTCTCTTTAGCATTGTGCTGGTAGTTGTCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase S_locus_glycop

Protein Analysis

108

Amino Acids

11.82

Weight (kDa)

9.25

Isoelectric Point (pI)

40.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAN_2 PF08276 2 - 50 1e-10 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 225
AfaI GTAC 1 cut(s) 276
AluBI AGCT 1 cut(s) 71
AluI AGCT 1 cut(s) 71
AlwI GGATC 1 cut(s) 225
AlwNI CAGNNNCTG 1 cut(s) 121
ApeKI GCWGC 1 cut(s) 203
AsuHPI GGTGA 1 cut(s) 146
BbsI GAAGAC 1 cut(s) 257
BbvI GCAGC 1 cut(s) 215
BccI CCATC 1 cut(s) 161
BfaI CTAG 1 cut(s) 140
BisI GCNGC 1 cut(s) 204
BlsI GCNGC 1 cut(s) 205
BmcAI AGTACT 1 cut(s) 276
BmsI GCATC 2 cut(s) 215, 294
BpiI GAAGAC 1 cut(s) 257
BpuEI CTTGAG 1 cut(s) 97
BsaJI CCNNGG 1 cut(s) 36
BseDI CCNNGG 1 cut(s) 36
BseXI GCAGC 1 cut(s) 215
BslFI GGGAC 1 cut(s) 12
BsmFI GGGAC 1 cut(s) 12
Bsp143I GATC 2 cut(s) 136, 217
BspPI GGATC 1 cut(s) 225
BssECI CCNNGG 1 cut(s) 36
BssMI GATC 2 cut(s) 136, 217
BssT1I CCWWGG 1 cut(s) 36
Bst6I CTCTTC 1 cut(s) 17
BstC8I GCNNGC 2 cut(s) 73, 283
BstDEI CTNAG 1 cut(s) 210
BstKTI GATC 2 cut(s) 139, 220
BstMBI GATC 2 cut(s) 136, 217
BstV1I GCAGC 1 cut(s) 215
BstV2I GAAGAC 1 cut(s) 257
BstXI CCANNNNNNTGG 1 cut(s) 37
BtsI GCAGTG 1 cut(s) 93
BtsIMutI CAGTG 2 cut(s) 93, 122
Cac8I GCNNGC 2 cut(s) 73, 283
CaiI CAGNNNCTG 1 cut(s) 121
Csp6I GTAC 1 cut(s) 275
CviAII CATG 1 cut(s) 90
CviJI RGCY 1 cut(s) 71
CviKI_1 RGCY 1 cut(s) 71
CviQI GTAC 1 cut(s) 275
DdeI CTNAG 1 cut(s) 210
DpnI GATC 2 cut(s) 138, 219
DpnII GATC 2 cut(s) 136, 217
Eam1104I CTCTTC 1 cut(s) 17
EarI CTCTTC 1 cut(s) 17
Eco130I CCWWGG 1 cut(s) 36
EcoT14I CCWWGG 1 cut(s) 36
ErhI CCWWGG 1 cut(s) 36
FaeI CATG 1 cut(s) 93
FaiI YATR 2 cut(s) 91, 108
FaqI GGGAC 1 cut(s) 12
FatI CATG 1 cut(s) 89
Fnu4HI GCNGC 1 cut(s) 204
Fsp4HI GCNGC 1 cut(s) 204
FspBI CTAG 1 cut(s) 140
GluI GCNGC 1 cut(s) 204
Hin1II CATG 1 cut(s) 93
HinfI GANTC 2 cut(s) 25, 230
HphI GGTGA 1 cut(s) 146
Hpy188I TCNGA 2 cut(s) 123, 166
HpyAV CCTTC 1 cut(s) 208
HpyCH4V TGCA 2 cut(s) 93, 281
HpyF3I CTNAG 1 cut(s) 210
Hsp92II CATG 1 cut(s) 93
Kzo9I GATC 2 cut(s) 136, 217
LpnPI CCDG 3 cut(s) 219, 267, 296
Lsp1109I GCAGC 1 cut(s) 215
LweI GCATC 2 cut(s) 215, 294
MaeI CTAG 1 cut(s) 140
MaeIII GTNAC 2 cut(s) 10, 289
MalI GATC 2 cut(s) 138, 219
MboI GATC 2 cut(s) 136, 217
MboII GAAGA 2 cut(s) 34, 262
MluCI AATT 1 cut(s) 82
MlyI GAGTC 1 cut(s) 34
MmeI TCCRAC 1 cut(s) 250
MnlI CCTC 2 cut(s) 125, 240
MseI TTAA 1 cut(s) 144
NdeII GATC 2 cut(s) 136, 217
NlaIII CATG 1 cut(s) 93
PfeI GAWTC 1 cut(s) 230
PkrI GCNGC 1 cut(s) 205
PleI GAGTC 1 cut(s) 33
PpsI GAGTC 1 cut(s) 33
PstNI CAGNNNCTG 1 cut(s) 121
RsaI GTAC 1 cut(s) 276
RsaNI GTAC 1 cut(s) 275
SaqAI TTAA 1 cut(s) 144
SatI GCNGC 1 cut(s) 204
Sau3AI GATC 2 cut(s) 136, 217
ScaI AGTACT 1 cut(s) 276
SchI GAGTC 1 cut(s) 34
SetI ASST 2 cut(s) 73, 136
SfaNI GCATC 2 cut(s) 215, 294
SmlI CTYRAG 1 cut(s) 76
SmoI CTYRAG 1 cut(s) 76
Sse9I AATT 1 cut(s) 82
SspMI CTAG 1 cut(s) 140
StyI CCWWGG 1 cut(s) 36
TasI AATT 1 cut(s) 82
TatI WGTACW 1 cut(s) 274
TfiI GAWTC 1 cut(s) 230
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TscAI CASTG 2 cut(s) 100, 122
TseI GCWGC 1 cut(s) 203
TspRI CASTG 2 cut(s) 100, 122
XspI CTAG 1 cut(s) 140
ZrmI AGTACT 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.