RLG00000023426

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000916
Physical Location & Seq
Reverse (-)
23424830 .. 23430150
5321 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023426

Sequence Viewer

Length: 408 bp
ATGGCTGCCATTCCAGCAATGTTGATTTGGAGACTGAAGAATGATTTAGGAATTTCCGCAAAGAGTGAAGGAGAGGAATTTGGGAAGCGGAAACACCGTGACCAGCGACTTCCGGCCGGCCCCACGACAACATCCTCATTCGCGGACACCCCCTCCCCCAAAGAGTACCAGACCACCGGTCGTCATCCGCCGCAATCTCCTCGACCACTTCTGTCGAATCCCAGCGATCCACCGCCGGCCCATTGCATCACCTCAATCAACGAATCCAGAGACATTGATAGGAGTTGGGTACTCTTCGTGCCCCAAAACTCCGCCGTCGGCCGCTCATCTTCCAAGCCGCGTCTCACCTTGGTCGATCCTCCCCCTCCATCCTCGATTGCGAGAGCATCTGCAGAGCACGCGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

14.67

Weight (kDa)

9.64

Isoelectric Point (pI)

56.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 324
AccII CGCG 3 cut(s) 143, 340, 401
AclWI GGATC 2 cut(s) 221, 350
AcoI YGGCCR 2 cut(s) 114, 319
AcsI RAATTY 2 cut(s) 51, 77
AcuI CTGAAG 1 cut(s) 56
AfaI GTAC 2 cut(s) 167, 291
AgeI ACCGGT 1 cut(s) 176
AhdI GACNNNNNGTC 1 cut(s) 177
Alw21I GWGCWC 1 cut(s) 399
Alw26I GTCTC 3 cut(s) 25, 264, 347
AlwI GGATC 2 cut(s) 221, 350
AoxI GGCC 4 cut(s) 114, 118, 237, 319
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 2 cut(s) 51, 77
AsiGI ACCGGT 1 cut(s) 176
AspS9I GGNCC 2 cut(s) 119, 238
AsuHPI GGTGA 2 cut(s) 241, 337
BaeGI GKGCMC 1 cut(s) 303
Bbv12I GWGCWC 1 cut(s) 399
BccI CCATC 1 cut(s) 376
BceAI ACGGC 1 cut(s) 299
BcgI CGANNNNNNTGC 2 cut(s) 182, 216
BcoDI GTCTC 3 cut(s) 25, 264, 347
BfmI CTRYAG 1 cut(s) 390
BisI GCNGC 4 cut(s) 6, 191, 322, 338
BlsI GCNGC 4 cut(s) 7, 192, 323, 339
BmeRI GACNNNNNGTC 1 cut(s) 177
BmgT120I GGNCC 2 cut(s) 119, 238
BmiI GGNNCC 1 cut(s) 121
BmsI GCATC 2 cut(s) 255, 395
BsaJI CCNNGG 1 cut(s) 348
BsaWI WCCGGW 1 cut(s) 176
BsaXI ACNNNNNCTCC 2 cut(s) 137, 167
Bse118I RCCGGY 3 cut(s) 116, 176, 235
Bse3DI GCAATG 2 cut(s) 24, 241
BseDI CCNNGG 1 cut(s) 348
BseGI GGATG 3 cut(s) 131, 184, 368
BseMI GCAATG 2 cut(s) 24, 241
BseRI GAGGAG 1 cut(s) 189
BseSI GKGCMC 1 cut(s) 303
BseX3I CGGCCG 2 cut(s) 114, 319
BseYI CCCAGC 1 cut(s) 221
Bsh1236I CGCG 3 cut(s) 143, 340, 401
Bsh1285I CGRYCG 3 cut(s) 117, 181, 322
BshFI GGCC 4 cut(s) 116, 120, 239, 321
BshTI ACCGGT 1 cut(s) 176
BsiEI CGRYCG 3 cut(s) 117, 181, 322
BsiHKAI GWGCWC 1 cut(s) 399
BsiSI CCGG 4 cut(s) 113, 117, 177, 236
BsmAI GTCTC 3 cut(s) 25, 264, 347
BsmBI CGTCTC 1 cut(s) 347
BsnI GGCC 4 cut(s) 116, 120, 239, 321
Bsp1286I GDGCHC 2 cut(s) 303, 399
Bsp143I GATC 2 cut(s) 226, 355
BspANI GGCC 4 cut(s) 116, 120, 239, 321
BspFNI CGCG 3 cut(s) 143, 340, 401
BspLI GGNNCC 1 cut(s) 121
BspMAI CTGCAG 1 cut(s) 394
BspPI GGATC 2 cut(s) 221, 350
BsrBI CCGCTC 1 cut(s) 324
BsrDI GCAATG 2 cut(s) 24, 241
BsrFI RCCGGY 3 cut(s) 116, 176, 235
BssAI RCCGGY 3 cut(s) 116, 176, 235
BssECI CCNNGG 1 cut(s) 348
BssMI GATC 2 cut(s) 226, 355
BssT1I CCWWGG 1 cut(s) 348
Bst4CI ACNGT 1 cut(s) 98
Bst6I CTCTTC 1 cut(s) 299
BstC8I GCNNGC 3 cut(s) 118, 237, 399
BstF5I GGATG 3 cut(s) 131, 184, 368
BstFNI CGCG 3 cut(s) 143, 340, 401
BstKTI GATC 2 cut(s) 229, 358
BstMAI GTCTC 3 cut(s) 25, 264, 347
BstMBI GATC 2 cut(s) 226, 355
BstMCI CGRYCG 3 cut(s) 117, 181, 322
BstMWI GCNNNNNNNGC 2 cut(s) 14, 398
BstSFI CTRYAG 1 cut(s) 390
BstSLI GKGCMC 1 cut(s) 303
BstUI CGCG 3 cut(s) 143, 340, 401
BstZI CGGCCG 2 cut(s) 114, 319
BsuRI GGCC 4 cut(s) 116, 120, 239, 321
BtsCI GGATG 3 cut(s) 131, 184, 368
Cac8I GCNNGC 3 cut(s) 118, 237, 399
Cfr10I RCCGGY 3 cut(s) 116, 176, 235
Cfr13I GGNCC 2 cut(s) 119, 238
CseI GACGC 1 cut(s) 329
Csp6I GTAC 2 cut(s) 166, 290
CspAI ACCGGT 1 cut(s) 176
CviJI RGCY 6 cut(s) 5, 116, 120, 239, 321, 337
CviKI_1 RGCY 6 cut(s) 5, 116, 120, 239, 321, 337
CviQI GTAC 2 cut(s) 166, 290
DpnI GATC 2 cut(s) 228, 357
DpnII GATC 2 cut(s) 226, 355
DriI GACNNNNNGTC 1 cut(s) 177
EaeI YGGCCR 2 cut(s) 114, 319
EagI CGGCCG 2 cut(s) 114, 319
Eam1104I CTCTTC 1 cut(s) 299
Eam1105I GACNNNNNGTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 299
EciI GGCGGA 2 cut(s) 177, 301
EclXI CGGCCG 2 cut(s) 114, 319
Eco130I CCWWGG 1 cut(s) 348
Eco52I CGGCCG 2 cut(s) 114, 319
Eco57I CTGAAG 1 cut(s) 56
EcoT14I CCWWGG 1 cut(s) 348
ErhI CCWWGG 1 cut(s) 348
Esp3I CGTCTC 1 cut(s) 347
Fnu4HI GCNGC 4 cut(s) 6, 191, 322, 338
FokI GGATG 3 cut(s) 118, 171, 355
FseI GGCCGGCC 1 cut(s) 120
Fsp4HI GCNGC 4 cut(s) 6, 191, 322, 338
GluI GCNGC 4 cut(s) 6, 191, 322, 338
GsaI CCCAGC 1 cut(s) 225
HaeIII GGCC 4 cut(s) 116, 120, 239, 321
HapII CCGG 4 cut(s) 113, 117, 177, 236
HgaI GACGC 1 cut(s) 329
HinfI GANTC 2 cut(s) 217, 263
HpaII CCGG 4 cut(s) 113, 117, 177, 236
HphI GGTGA 2 cut(s) 241, 337
Hpy188I TCNGA 1 cut(s) 407
Hpy188III TCNNGA 1 cut(s) 267
Hpy99I CGWCG 1 cut(s) 320
HpyAV CCTTC 1 cut(s) 62
HpyCH4III ACNGT 1 cut(s) 98
HpyCH4V TGCA 2 cut(s) 246, 392
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 398
KroI GCCGGC 2 cut(s) 116, 235
KroNI GCCGGC 2 cut(s) 118, 237
Kzo9I GATC 2 cut(s) 226, 355
LpnPI CCDG 9 cut(s) 27, 116, 126, 130, 182, 190, 235, 249, 280
LweI GCATC 2 cut(s) 255, 395
MaeIII GTNAC 1 cut(s) 98
MalI GATC 2 cut(s) 228, 357
MbiI CCGCTC 1 cut(s) 324
MboI GATC 2 cut(s) 226, 355
MboII GAAGA 3 cut(s) 49, 286, 321
MhlI GDGCHC 2 cut(s) 303, 399
MluCI AATT 2 cut(s) 51, 77
MnlI CCTC 8 cut(s) 67, 145, 163, 210, 262, 369, 375, 382
MroNI GCCGGC 2 cut(s) 116, 235
MspI CCGG 4 cut(s) 113, 117, 177, 236
MvnI CGCG 3 cut(s) 143, 340, 401
MwoI GCNNNNNNNGC 2 cut(s) 14, 398
NaeI GCCGGC 2 cut(s) 118, 237
NdeII GATC 2 cut(s) 226, 355
NgoMIV GCCGGC 2 cut(s) 116, 235
NlaIV GGNNCC 1 cut(s) 121
NmuCI GTSAC 1 cut(s) 98
PdiI GCCGGC 2 cut(s) 118, 237
PfeI GAWTC 2 cut(s) 217, 263
PinAI ACCGGT 1 cut(s) 176
PkrI GCNGC 4 cut(s) 7, 192, 323, 339
PspFI CCCAGC 1 cut(s) 221
PspN4I GGNNCC 1 cut(s) 121
PspPI GGNCC 2 cut(s) 119, 238
PstI CTGCAG 1 cut(s) 394
RigI GGCCGGCC 1 cut(s) 120
RsaI GTAC 2 cut(s) 167, 291
RsaNI GTAC 2 cut(s) 166, 290
SatI GCNGC 4 cut(s) 6, 191, 322, 338
Sau3AI GATC 2 cut(s) 226, 355
Sau96I GGNCC 2 cut(s) 119, 238
SduI GDGCHC 2 cut(s) 303, 399
SetI ASST 2 cut(s) 254, 350
SfaNI GCATC 2 cut(s) 255, 395
SfcI CTRYAG 1 cut(s) 390
Sse9I AATT 2 cut(s) 51, 77
StyI CCWWGG 1 cut(s) 348
TaaI ACNGT 1 cut(s) 98
TaqI TCGA 4 cut(s) 202, 215, 354, 374
TasI AATT 2 cut(s) 51, 77
TauI GCSGC 3 cut(s) 193, 324, 340
TfiI GAWTC 2 cut(s) 217, 263
TseFI GTSAC 1 cut(s) 98
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 98
XapI RAATTY 2 cut(s) 51, 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.