Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0000916

Physical Location & Seq

Genomic Coordinates Forward (+)

28728833 .. 28729510

Gene Structure 678 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1238000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGCCAAATGGTTCTCTAGAATCTCTTTTGTTCCAGAAGAGTCCGATCGTCTTGAATTGGAAAACTGAATATCACATTGCTGTTGGGACTGCAAGAGGACTTGCATATCTTCATCATAGTTGCAGAGAATGCATCATACACTGTGACATCAAACCTGAAAACATTCTGTTGGATGCAGAATATGCCCCCAAAATAGCTGATTTTGGTCTTGCAAAGCTCGTGAGCAGAGACTTCAGCCGGATAATTACAACCATGCAAGGGACAAGAGGGTATATTGCTCCGGAATGGATATCAGGAGAAGCTATCACAGCAAAAGCCGATGTCTTTAGCTACGGAATGTTGTGTTTTGAGATCATATCAGGAAGGAGAAACAGAGATCTTTTGGATGATGGGTTGCAAAACTACTTCCCCACTCGCGTTGCAAAATGTATTAACGAAAGGGAGAGAGATGTCGATACCTTGTTGGATTGCAGGTTAGAAGGTAATGCAAACAAAGAAGAAGTGATGAGAGCATGCAAAGTATCTTTGTTGATGCATTCAAGATGCGAGAACGATAGGCGGACAATGGGGCAAGTTGATCAACTTTCTGGAAGGAGTCATAGATCTCGGCATACCTCCTATCCCACAGTTCCTCGACCGGTTTTCAAAGAGTCTAGTCGAGTCCATACATTACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

226

Amino Acids

25.6

Weight (kDa)

8.41

Isoelectric Point (pI)

46.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	1 - 122	3.6e-29	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	1 - 147	1.6e-21	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000916)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g26420 FvH4_6g26420 FvH4_6g26450 FvH4_6g26451
malus_domestica	MD09G1116700.v1.1 MD09G1233200.v1.1 MD12G1033500.v1.1 MD14G1034400.v1.1 MD14G1034600.v1.1 MD14G1034700.v1.1 MD14G1034800.v1.1 MD14G1034900.v1.1 MD14G1035200.v1.1 MD17G1090300.v1.1 MD17G1108200.v1.1 MD17G1237700.v1.1 MD17G1237800.v1.1 MD17G1238000.v1.1 MD17G1238400.v1.1
prunus_persica	Prupe.3G131100_v2.0.a1 Prupe.3G141400_v2.0.a1
pyrus_communis	pycom09g04120 pycom12g03080 pycom14g03020 pycom14g03080 pycom14g03090 pycom17g24250
rosa_chinensis	RchiOBHm_Chr2g0127791 RchiOBHm_Chr2g0127811 RchiOBHm_Chr2g0127821 RchiOBHm_Chr2g0128001
rosa_laevigata	RLG00000002113 RLG00000018931 RLG00000018932 RLG00000018933 RLG00000018934 RLG00000023426
rosa_multiflora	Rmu_sc0000516.1_g000026 Rmu_sc0000516.1_g000045 Rmu_ssc0000093.1_g000010 Rmu_ssc0000093.1_g000016 Rmu_ssc0000093.1_g000017 Rmu_ssc0000093.1_g000024
rosa_roxburghii	Rroxscaffold_2G00116790 Rroxscaffold_2G00116800 Rroxscaffold_2G00116810 Rroxscaffold_2G00116840
rosa_rugosa	Rorug02G0270500 Rorug02G0270600 Rorug02G0270800 Rorug02G0270900 Rorug02G0271000
rosa_samantha	Rh2AG323100 Rh2BG332100 Rh2BG332200 Rh2BG332300 Rh2CG310900 Rh2CG311000 Rh2DG350400 Rh2DG350500 Rh2DG350600 Rh2DG350700
rosa_wichuraiana	Rw2G026190 Rw2G026210 Rw2G026230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	462
AccII	CGCG	1 cut(s)	417
AccIII	TCCGGA	1 cut(s)	280
AciI	CCGC	1 cut(s)	559
AcuI	CTGAAG	1 cut(s)	217
AfiI	CCNNNNNNNGG	1 cut(s)	258
AgeI	ACCGGT	1 cut(s)	637
AgsI	TTSAA	3 cut(s)	55, 540, 646
AluBI	AGCT	4 cut(s)	197, 217, 302, 330
AluI	AGCT	4 cut(s)	197, 217, 302, 330
Alw26I	GTCTC	1 cut(s)	222
Aor13HI	TCCGGA	1 cut(s)	280
AsiGI	ACCGGT	1 cut(s)	637
Asp700I	GAANNNNTTC	1 cut(s)	162
BauI	CACGAG	1 cut(s)	218
BccI	CCATC	1 cut(s)	383
BclI	TGATCA	1 cut(s)	577
BcoDI	GTCTC	1 cut(s)	222
BfaI	CTAG	2 cut(s)	17, 654
BfuAI	ACCTGC	1 cut(s)	462
BglII	AGATCT	2 cut(s)	376, 602
BmsI	GCATC	4 cut(s)	141, 163, 522, 533
BsaWI	WCCGGW	2 cut(s)	280, 637
Bsc4I	CCNNNNNNNGG	1 cut(s)	258
Bse118I	RCCGGY	1 cut(s)	637
Bse3DI	GCAATG	1 cut(s)	75
BseAI	TCCGGA	1 cut(s)	280
BseGI	GGATG	2 cut(s)	178, 391
BseLI	CCNNNNNNNGG	1 cut(s)	258
BseMI	GCAATG	1 cut(s)	75
Bsh1236I	CGCG	1 cut(s)	417
Bsh1285I	CGRYCG	2 cut(s)	48, 638
BshTI	ACCGGT	1 cut(s)	637
BsiEI	CGRYCG	2 cut(s)	48, 638
BsiSI	CCGG	3 cut(s)	238, 281, 638
BslFI	GGGAC	2 cut(s)	100, 274
BslI	CCNNNNNNNGG	1 cut(s)	258
BsmAI	GTCTC	1 cut(s)	222
BsmFI	GGGAC	2 cut(s)	100, 274
BsmI	GAATGC	2 cut(s)	134, 535
Bsp13I	TCCGGA	1 cut(s)	280
Bsp143I	GATC	5 cut(s)	45, 351, 376, 577, 602
BspACI	CCGC	1 cut(s)	559
BspEI	TCCGGA	1 cut(s)	280
BspFNI	CGCG	1 cut(s)	417
BspMI	ACCTGC	1 cut(s)	462
BsrDI	GCAATG	1 cut(s)	75
BsrFI	RCCGGY	1 cut(s)	637
BssAI	RCCGGY	1 cut(s)	637
BssMI	GATC	5 cut(s)	45, 351, 376, 577, 602
BssSI	CACGAG	1 cut(s)	218
Bst2BI	CACGAG	1 cut(s)	218
Bst4CI	ACNGT	2 cut(s)	143, 628
Bst6I	CTCTTC	1 cut(s)	32
BstAPI	GCANNNNNTGC	2 cut(s)	129, 182
BstC8I	GCNNGC	1 cut(s)	514
BstF5I	GGATG	2 cut(s)	178, 391
BstFNI	CGCG	1 cut(s)	417
BstKTI	GATC	5 cut(s)	48, 354, 379, 580, 605
BstMAI	GTCTC	1 cut(s)	222
BstMBI	GATC	5 cut(s)	45, 351, 376, 577, 602
BstMCI	CGRYCG	2 cut(s)	48, 638
BstMWI	GCNNNNNNNGC	3 cut(s)	129, 182, 308
BstNSI	RCATGY	1 cut(s)	516
BstUI	CGCG	1 cut(s)	417
BstX2I	RGATCY	2 cut(s)	376, 602
BstYI	RGATCY	2 cut(s)	376, 602
BtsCI	GGATG	2 cut(s)	178, 391
BtsIMutI	CAGTG	1 cut(s)	139
BveI	ACCTGC	1 cut(s)	462
Cac8I	GCNNGC	1 cut(s)	514
Cfr10I	RCCGGY	1 cut(s)	637
CspAI	ACCGGT	1 cut(s)	637
CspCI	CAANNNNNGTGG	2 cut(s)	400, 435
CviAII	CATG	2 cut(s)	253, 513
CviJI	RGCY	6 cut(s)	197, 217, 237, 302, 317, 330
CviKI_1	RGCY	6 cut(s)	197, 217, 237, 302, 317, 330
DpnI	GATC	5 cut(s)	47, 353, 378, 579, 604
DpnII	GATC	5 cut(s)	45, 351, 376, 577, 602
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
EciI	GGCGGA	1 cut(s)	574
Eco32I	GATATC	1 cut(s)	291
Eco57I	CTGAAG	1 cut(s)	217
EcoRV	GATATC	1 cut(s)	291
EcoT22I	ATGCAT	2 cut(s)	134, 537
FaeI	CATG	2 cut(s)	256, 516
FaqI	GGGAC	2 cut(s)	100, 274
FatI	CATG	2 cut(s)	252, 512
FbaI	TGATCA	1 cut(s)	577
FokI	GGATG	2 cut(s)	185, 398
FspBI	CTAG	2 cut(s)	17, 654
HapII	CCGG	3 cut(s)	238, 281, 638
Hin1II	CATG	2 cut(s)	256, 516
HinfI	GANTC	5 cut(s)	20, 40, 595, 650, 660
HpaII	CCGG	3 cut(s)	238, 281, 638
Hpy188I	TCNGA	1 cut(s)	45
Hpy188III	TCNNGA	9 cut(s)	17, 34, 52, 220, 281, 294, 360, 540, 588
HpyAV	CCTTC	3 cut(s)	357, 473, 585
HpyCH4III	ACNGT	2 cut(s)	143, 628
HpyF10VI	GCNNNNNNNGC	3 cut(s)	129, 182, 308
Hsp92II	CATG	2 cut(s)	256, 516
Kpn2I	TCCGGA	1 cut(s)	280
Ksp22I	TGATCA	1 cut(s)	577
Kzo9I	GATC	5 cut(s)	45, 351, 376, 577, 602
LmnI	GCTCC	1 cut(s)	283
LpnPI	CCDG	9 cut(s)	47, 168, 251, 279, 294, 345, 457, 573, 651
LweI	GCATC	4 cut(s)	141, 163, 522, 533
MaeI	CTAG	2 cut(s)	17, 654
MaeIII	GTNAC	1 cut(s)	143
MalI	GATC	5 cut(s)	47, 353, 378, 579, 604
MboI	GATC	5 cut(s)	45, 351, 376, 577, 602
MboII	GAAGA	3 cut(s)	49, 101, 509
MflI	RGATCY	2 cut(s)	376, 602
MluCI	AATT	2 cut(s)	55, 243
MlyI	GAGTC	4 cut(s)	49, 604, 659, 669
MmeI	TCCRAC	2 cut(s)	150, 444
MnlI	CCTC	4 cut(s)	89, 260, 625, 642
Mph1103I	ATGCAT	2 cut(s)	134, 537
MroI	TCCGGA	1 cut(s)	280
MroXI	GAANNNNTTC	1 cut(s)	162
MseI	TTAA	1 cut(s)	432
MspI	CCGG	3 cut(s)	238, 281, 638
Mva1269I	GAATGC	2 cut(s)	134, 535
MvnI	CGCG	1 cut(s)	417
MwoI	GCNNNNNNNGC	3 cut(s)	129, 182, 308
NdeII	GATC	5 cut(s)	45, 351, 376, 577, 602
NlaIII	CATG	2 cut(s)	256, 516
NmeAIII	GCCGAG	1 cut(s)	586
NmuCI	GTSAC	1 cut(s)	143
NsiI	ATGCAT	2 cut(s)	134, 537
NspI	RCATGY	1 cut(s)	516
PaeI	GCATGC	1 cut(s)	516
PctI	GAATGC	2 cut(s)	134, 535
PdmI	GAANNNNTTC	1 cut(s)	162
PfeI	GAWTC	1 cut(s)	20
PinAI	ACCGGT	1 cut(s)	637
Ple19I	CGATCG	1 cut(s)	48
PleI	GAGTC	4 cut(s)	48, 603, 658, 668
PpsI	GAGTC	4 cut(s)	48, 603, 658, 668
PsuI	RGATCY	2 cut(s)	376, 602
PvuI	CGATCG	1 cut(s)	48
SaqAI	TTAA	1 cut(s)	432
Sau3AI	GATC	5 cut(s)	45, 351, 376, 577, 602
SchI	GAGTC	4 cut(s)	49, 604, 659, 669
SetI	ASST	9 cut(s)	157, 199, 219, 304, 332, 461, 476, 484, 617
SfaNI	GCATC	4 cut(s)	141, 163, 522, 533
SphI	GCATGC	1 cut(s)	516
Sse9I	AATT	2 cut(s)	55, 243
SsiI	CCGC	1 cut(s)	559
SspMI	CTAG	2 cut(s)	17, 654
TaaI	ACNGT	2 cut(s)	143, 628
TaqI	TCGA	3 cut(s)	453, 634, 658
TasI	AATT	2 cut(s)	55, 243
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	1 cut(s)	432
Tru9I	TTAA	1 cut(s)	432
TscAI	CASTG	1 cut(s)	146
TseFI	GTSAC	1 cut(s)	143
Tsp45I	GTSAC	1 cut(s)	143
TspDTI	ATGAA	1 cut(s)	101
TspGWI	ACGGA	1 cut(s)	348
TspRI	CASTG	1 cut(s)	146
XbaI	TCTAGA	1 cut(s)	16
XceI	RCATGY	1 cut(s)	516
XmnI	GAANNNNTTC	1 cut(s)	162
XspI	CTAG	2 cut(s)	17, 654
Zsp2I	ATGCAT	2 cut(s)	134, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.