Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000093.1

Orthogroup ID

OG0000916

Physical Location & Seq

Genomic Coordinates Reverse (-)

86905 .. 87611

Gene Structure 707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000093.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

atgcgccttatgcctcaaggctgcaatgctctcccgaaaacgcctcgggtacgccttcagcgttttaaaacattgatagggactgccaaaggattggcttaccttcatgatgagtgtagagactgcatcatacactatgacattaagcctgagaacattttgcttgatgcagaatacactccaaaagttgcagattttggtcttgcaaaactcatgggtagacaccatagccatgttctgacaacaatgagaggaaccgctggctatcttgctccagaatggtttacaggtgaagccatcacgccaaaggccgatgtcttcagctatggaaagttgctatttgaggttatatctggaaggagaaacagtgaatcgttagatgatggagtagaaaactacattcctacccgggttgcatatgtgttgggaggtaatgttgacaaacaggaactcaatagagcatgcaaagtcgcgtgttggtgcattcaagatgatgagaaggatagaccaagtatgtggcaggttgttcaaattcttgagggagttttagatgttggtataccccctattccacagttcctccagcgcctcattataaagccagtggaaacaaaagaatatcaggaaactacttcaagttcagaactcatgttccttagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase S_locus_glycop

Protein Analysis

220

Amino Acids

24.87

Weight (kDa)

6.22

Isoelectric Point (pI)

36.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000916)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g26420 FvH4_6g26420 FvH4_6g26450 FvH4_6g26451
malus_domestica	MD09G1116700.v1.1 MD09G1233200.v1.1 MD12G1033500.v1.1 MD14G1034400.v1.1 MD14G1034600.v1.1 MD14G1034700.v1.1 MD14G1034800.v1.1 MD14G1034900.v1.1 MD14G1035200.v1.1 MD17G1090300.v1.1 MD17G1108200.v1.1 MD17G1237700.v1.1 MD17G1237800.v1.1 MD17G1238000.v1.1 MD17G1238400.v1.1
prunus_persica	Prupe.3G131100_v2.0.a1 Prupe.3G141400_v2.0.a1
pyrus_communis	pycom09g04120 pycom12g03080 pycom14g03020 pycom14g03080 pycom14g03090 pycom17g24250
rosa_chinensis	RchiOBHm_Chr2g0127791 RchiOBHm_Chr2g0127811 RchiOBHm_Chr2g0127821 RchiOBHm_Chr2g0128001
rosa_laevigata	RLG00000002113 RLG00000018931 RLG00000018932 RLG00000018933 RLG00000018934 RLG00000023426
rosa_multiflora	Rmu_sc0000516.1_g000026 Rmu_sc0000516.1_g000045 Rmu_ssc0000093.1_g000010 Rmu_ssc0000093.1_g000016 Rmu_ssc0000093.1_g000017 Rmu_ssc0000093.1_g000024
rosa_roxburghii	Rroxscaffold_2G00116790 Rroxscaffold_2G00116800 Rroxscaffold_2G00116810 Rroxscaffold_2G00116840
rosa_rugosa	Rorug02G0270500 Rorug02G0270600 Rorug02G0270800 Rorug02G0270900 Rorug02G0271000
rosa_samantha	Rh2AG323100 Rh2BG332100 Rh2BG332200 Rh2BG332300 Rh2CG310900 Rh2CG311000 Rh2DG350400 Rh2DG350500 Rh2DG350600 Rh2DG350700
rosa_wichuraiana	Rw2G026190 Rw2G026210 Rw2G026230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	596
Acc36I	ACCTGC	1 cut(s)	511
AccI	GTMKAC	2 cut(s)	220, 559
AccII	CGCG	1 cut(s)	473
AciI	CCGC	1 cut(s)	258
AcsI	RAATTY	1 cut(s)	531
AcuI	CTGAAG	2 cut(s)	41, 304
AfaI	GTAC	1 cut(s)	51
AgsI	TTSAA	3 cut(s)	488, 530, 636
AloI	GAACNNNNNNTCC	1 cut(s)	636
AluBI	AGCT	2 cut(s)	324, 660
AluI	AGCT	2 cut(s)	324, 660
Alw26I	GTCTC	1 cut(s)	114
Ama87I	CYCGRG	2 cut(s)	45, 408
AoxI	GGCC	1 cut(s)	309
ApeKI	GCWGC	1 cut(s)	21
ApoI	RAATTY	1 cut(s)	531
AspLEI	GCGC	2 cut(s)	6, 588
AsuC2I	CCSGG	2 cut(s)	409, 410
AsuHPI	GGTGA	1 cut(s)	302
AvaI	CYCGRG	2 cut(s)	45, 408
BbsI	GAAGAC	1 cut(s)	310
BbvI	GCAGC	1 cut(s)	8
BccI	CCATC	2 cut(s)	305, 377
BcnI	CCSGG	2 cut(s)	409, 410
BcoDI	GTCTC	1 cut(s)	114
BfoI	RGCGCY	1 cut(s)	589
BfuAI	ACCTGC	1 cut(s)	511
BisI	GCNGC	1 cut(s)	22
BlsI	GCNGC	1 cut(s)	23
Bme1390I	CCNGG	2 cut(s)	409, 410
BmeT110I	CYCGRG	2 cut(s)	45, 408
BmiI	GGNNCC	1 cut(s)	256
BmrFI	CCNGG	2 cut(s)	409, 410
BmsI	GCATC	2 cut(s)	135, 157
BpiI	GAAGAC	1 cut(s)	310
BpmI	CTGGAG	2 cut(s)	258, 566
Bpu10I	CCTNAGC	1 cut(s)	656
BpuEI	CTTGAG	1 cut(s)	557
BpuMI	CCSGG	2 cut(s)	409, 410
BsaJI	CCNNGG	2 cut(s)	44, 408
BsaXI	ACNNNNNCTCC	6 cut(s)	352, 382, 420, 450, 564, 594
Bse1I	ACTGG	1 cut(s)	602
Bse3DI	GCAATG	1 cut(s)	31
BseDI	CCNNGG	2 cut(s)	44, 408
BseMI	GCAATG	1 cut(s)	31
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	1 cut(s)	602
BseXI	GCAGC	1 cut(s)	8
Bsh1236I	CGCG	1 cut(s)	473
BshFI	GGCC	1 cut(s)	311
BsiHKCI	CYCGRG	2 cut(s)	45, 408
BsiSI	CCGG	1 cut(s)	409
BslFI	GGGAC	1 cut(s)	94
BsmAI	GTCTC	1 cut(s)	114
BsmFI	GGGAC	1 cut(s)	94
BsmI	GAATGC	1 cut(s)	483
BsnI	GGCC	1 cut(s)	311
BsoBI	CYCGRG	2 cut(s)	45, 408
BspACI	CCGC	1 cut(s)	258
BspANI	GGCC	1 cut(s)	311
BspCNI	CTCAG	1 cut(s)	142
BspFNI	CGCG	1 cut(s)	473
BspHI	TCATGA	1 cut(s)	106
BspLI	GGNNCC	1 cut(s)	256
BspMI	ACCTGC	1 cut(s)	511
BsrDI	GCAATG	1 cut(s)	31
BsrI	ACTGG	1 cut(s)	602
BssECI	CCNNGG	2 cut(s)	44, 408
BssNAI	GTATAC	1 cut(s)	560
Bst1107I	GTATAC	1 cut(s)	560
Bst4CI	ACNGT	2 cut(s)	368, 576
BstC8I	GCNNGC	2 cut(s)	262, 463
BstDEI	CTNAG	2 cut(s)	150, 656
BstFNI	CGCG	1 cut(s)	473
BstH2I	RGCGCY	1 cut(s)	589
BstHHI	GCGC	2 cut(s)	6, 588
BstMAI	GTCTC	1 cut(s)	114
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstNSI	RCATGY	1 cut(s)	465
BstSCI	CCNGG	2 cut(s)	407, 408
BstUI	CGCG	1 cut(s)	473
BstV1I	GCAGC	1 cut(s)	8
BstV2I	GAAGAC	1 cut(s)	310
BstXI	CCANNNNNNTGG	2 cut(s)	94, 516
BstZ17I	GTATAC	1 cut(s)	560
BsuRI	GGCC	1 cut(s)	311
BtsIMutI	CAGTG	2 cut(s)	373, 609
BveI	ACCTGC	1 cut(s)	511
Cac8I	GCNNGC	2 cut(s)	262, 463
CciI	TCATGA	1 cut(s)	106
CfoI	GCGC	2 cut(s)	6, 588
Cfr9I	CCCGGG	1 cut(s)	408
Csp6I	GTAC	1 cut(s)	50
CviAII	CATG	5 cut(s)	107, 214, 233, 462, 649
CviQI	GTAC	1 cut(s)	50
DdeI	CTNAG	2 cut(s)	150, 656
DraI	TTTAAA	1 cut(s)	67
Eco57I	CTGAAG	2 cut(s)	41, 304
Eco88I	CYCGRG	2 cut(s)	45, 408
FaeI	CATG	5 cut(s)	110, 217, 236, 465, 652
FaqI	GGGAC	1 cut(s)	94
FatI	CATG	5 cut(s)	106, 213, 232, 461, 648
FauNDI	CATATG	1 cut(s)	418
FblI	GTMKAC	2 cut(s)	220, 559
Fnu4HI	GCNGC	1 cut(s)	22
Fsp4HI	GCNGC	1 cut(s)	22
GlaI	GCGC	2 cut(s)	5, 587
GluI	GCNGC	1 cut(s)	22
GsuI	CTGGAG	2 cut(s)	258, 566
HaeII	RGCGCY	1 cut(s)	589
HaeIII	GGCC	1 cut(s)	311
HapII	CCGG	1 cut(s)	409
HhaI	GCGC	2 cut(s)	6, 588
Hin1II	CATG	5 cut(s)	110, 217, 236, 465, 652
Hin6I	GCGC	2 cut(s)	4, 586
HinP1I	GCGC	2 cut(s)	4, 586
HincII	GTYRAC	1 cut(s)	439
HindII	GTYRAC	1 cut(s)	439
HinfI	GANTC	1 cut(s)	371
HpaII	CCGG	1 cut(s)	409
HphI	GGTGA	1 cut(s)	302
Hpy166II	GTNNAC	4 cut(s)	221, 285, 439, 560
Hpy188I	TCNGA	2 cut(s)	240, 643
Hpy188III	TCNNGA	7 cut(s)	34, 107, 275, 354, 488, 536, 623
Hpy8I	GTNNAC	4 cut(s)	221, 285, 439, 560
HpyAV	CCTTC	4 cut(s)	65, 113, 351, 493
HpyCH4III	ACNGT	2 cut(s)	368, 576
HpyCH4V	TGCA	8 cut(s)	24, 126, 170, 191, 206, 416, 465, 483
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	2 cut(s)	150, 656
Hsp92II	CATG	5 cut(s)	110, 217, 236, 465, 652
HspAI	GCGC	2 cut(s)	4, 586
LmnI	GCTCC	1 cut(s)	277
Lsp1109I	GCAGC	1 cut(s)	8
LweI	GCATC	2 cut(s)	135, 157
MboII	GAAGA	1 cut(s)	310
MluCI	AATT	1 cut(s)	531
MnlI	CCTC	8 cut(s)	24, 54, 245, 337, 422, 532, 590, 599
MseI	TTAA	2 cut(s)	66, 144
MslI	CAYNNNNRTG	1 cut(s)	231
MspA1I	CMGCKG	1 cut(s)	260
MspI	CCGG	1 cut(s)	409
MspR9I	CCNGG	2 cut(s)	409, 410
Mva1269I	GAATGC	1 cut(s)	483
MvnI	CGCG	1 cut(s)	473
MwoI	GCNNNNNNNGC	1 cut(s)	10
NciI	CCSGG	2 cut(s)	409, 410
NdeI	CATATG	1 cut(s)	418
NlaIII	CATG	5 cut(s)	110, 217, 236, 465, 652
NlaIV	GGNNCC	1 cut(s)	256
NspI	RCATGY	1 cut(s)	465
PaeI	GCATGC	1 cut(s)	465
PagI	TCATGA	1 cut(s)	106
PcsI	WCGNNNNNNNCGW	1 cut(s)	58
PctI	GAATGC	1 cut(s)	483
PfeI	GAWTC	1 cut(s)	371
PkrI	GCNGC	1 cut(s)	23
PsiI	TTATAA	1 cut(s)	596
PspN4I	GGNNCC	1 cut(s)	256
RsaI	GTAC	1 cut(s)	51
RsaNI	GTAC	1 cut(s)	50
RseI	CAYNNNNRTG	1 cut(s)	231
SaqAI	TTAA	2 cut(s)	66, 144
SatI	GCNGC	1 cut(s)	22
ScrFI	CCNGG	2 cut(s)	409, 410
SetI	ASST	7 cut(s)	105, 292, 326, 348, 433, 525, 662
SfaNI	GCATC	2 cut(s)	135, 157
SmaI	CCCGGG	1 cut(s)	410
SmiMI	CAYNNNNRTG	1 cut(s)	231
SmlI	CTYRAG	2 cut(s)	15, 536
SmoI	CTYRAG	2 cut(s)	15, 536
SphI	GCATGC	1 cut(s)	465
Sse9I	AATT	1 cut(s)	531
SsiI	CCGC	1 cut(s)	258
StyD4I	CCNGG	2 cut(s)	407, 408
TaaI	ACNGT	2 cut(s)	368, 576
TasI	AATT	1 cut(s)	531
TfiI	GAWTC	1 cut(s)	371
Tru1I	TTAA	2 cut(s)	66, 144
Tru9I	TTAA	2 cut(s)	66, 144
TscAI	CASTG	2 cut(s)	373, 609
TseI	GCWGC	1 cut(s)	21
TspDTI	ATGAA	1 cut(s)	95
TspMI	CCCGGG	1 cut(s)	408
TspRI	CASTG	2 cut(s)	373, 609
XapI	RAATTY	1 cut(s)	531
XceI	RCATGY	1 cut(s)	465
XmaI	CCCGGG	1 cut(s)	408
XmiI	GTMKAC	2 cut(s)	220, 559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.