Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000916

Physical Location & Seq

Genomic Coordinates Reverse (-)

28677139 .. 28680448

Gene Structure 3310 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0270500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGGAGTGACCAAGGAACAAGTCGAAGCTTCATTGACCTCTAAATTGAACCCTTCACATCTCGAAGTAGTCGATACATCTGGAGGATGTGGTGCTAGCTTTGTTATTGAAATAGTATCAGAACAGTTTGAAGGAAAGAGGTTGCTAGAGAGGCATCGGGTGGTAAATTCTGCTTTGGAAGAGGAGATGAAGGAGATTCATGCTCTCTCAATAAAGAAGGCCCTCACACCAGAGCAGTGGAAACAACAGCAGGAGGCTGAAAAATCTAAACCTGCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

93

Amino Acids

10.3

Weight (kDa)

5.61

Isoelectric Point (pI)

45.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BolA	PF01722	12 - 79	1.5e-19	BolA-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000916)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g26420 FvH4_6g26420 FvH4_6g26450 FvH4_6g26451
malus_domestica	MD09G1116700.v1.1 MD09G1233200.v1.1 MD12G1033500.v1.1 MD14G1034400.v1.1 MD14G1034600.v1.1 MD14G1034700.v1.1 MD14G1034800.v1.1 MD14G1034900.v1.1 MD14G1035200.v1.1 MD17G1090300.v1.1 MD17G1108200.v1.1 MD17G1237700.v1.1 MD17G1237800.v1.1 MD17G1238000.v1.1 MD17G1238400.v1.1
prunus_persica	Prupe.3G131100_v2.0.a1 Prupe.3G141400_v2.0.a1
pyrus_communis	pycom09g04120 pycom12g03080 pycom14g03020 pycom14g03080 pycom14g03090 pycom17g24250
rosa_chinensis	RchiOBHm_Chr2g0127791 RchiOBHm_Chr2g0127811 RchiOBHm_Chr2g0127821 RchiOBHm_Chr2g0128001
rosa_laevigata	RLG00000002113 RLG00000018931 RLG00000018932 RLG00000018933 RLG00000018934 RLG00000023426
rosa_multiflora	Rmu_sc0000516.1_g000026 Rmu_sc0000516.1_g000045 Rmu_ssc0000093.1_g000010 Rmu_ssc0000093.1_g000016 Rmu_ssc0000093.1_g000017 Rmu_ssc0000093.1_g000024
rosa_roxburghii	Rroxscaffold_2G00116790 Rroxscaffold_2G00116800 Rroxscaffold_2G00116810 Rroxscaffold_2G00116840
rosa_rugosa	Rorug02G0270500 Rorug02G0270600 Rorug02G0270800 Rorug02G0270900 Rorug02G0271000
rosa_samantha	Rh2AG323100 Rh2BG332100 Rh2BG332200 Rh2BG332300 Rh2CG310900 Rh2CG311000 Rh2DG350400 Rh2DG350500 Rh2DG350600 Rh2DG350700
rosa_wichuraiana	Rw2G026190 Rw2G026210 Rw2G026230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	166
AgsI	TTSAA	3 cut(s)	49, 110, 131
AluBI	AGCT	2 cut(s)	29, 99
AluI	AGCT	2 cut(s)	29, 99
AoxI	GGCC	1 cut(s)	219
ApeKI	GCWGC	1 cut(s)	275
ApoI	RAATTY	1 cut(s)	166
AspS9I	GGNCC	1 cut(s)	220
AsuNHI	GCTAGC	1 cut(s)	95
BbvI	GCAGC	1 cut(s)	262
BfaI	CTAG	2 cut(s)	96, 146
BisI	GCNGC	1 cut(s)	276
BlsI	GCNGC	1 cut(s)	277
BmgT120I	GGNCC	1 cut(s)	220
BmsI	GCATC	1 cut(s)	163
BmtI	GCTAGC	1 cut(s)	99
BpmI	CTGGAG	1 cut(s)	102
BsaJI	CCNNGG	1 cut(s)	12
BseDI	CCNNGG	1 cut(s)	12
BseGI	GGATG	1 cut(s)	92
BseRI	GAGGAG	1 cut(s)	197
BseXI	GCAGC	1 cut(s)	262
BshFI	GGCC	1 cut(s)	221
BsnI	GGCC	1 cut(s)	221
BspANI	GGCC	1 cut(s)	221
BspOI	GCTAGC	1 cut(s)	99
BssECI	CCNNGG	1 cut(s)	12
BssT1I	CCWWGG	1 cut(s)	12
Bst4CI	ACNGT	1 cut(s)	126
Bst6I	CTCTTC	1 cut(s)	174
BstC8I	GCNNGC	1 cut(s)	97
BstF5I	GGATG	1 cut(s)	92
BstMWI	GCNNNNNNNGC	1 cut(s)	151
BstV1I	GCAGC	1 cut(s)	262
BstXI	CCANNNNNNTGG	1 cut(s)	237
BsuRI	GGCC	1 cut(s)	221
BtsCI	GGATG	1 cut(s)	92
BtsI	GCAGTG	1 cut(s)	242
BtsIMutI	CAGTG	1 cut(s)	242
Cac8I	GCNNGC	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	220
CviAII	CATG	1 cut(s)	200
CviJI	RGCY	4 cut(s)	29, 99, 221, 257
CviKI_1	RGCY	4 cut(s)	29, 99, 221, 257
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
Eco130I	CCWWGG	1 cut(s)	12
EcoO109I	RGGNCCY	1 cut(s)	220
EcoT14I	CCWWGG	1 cut(s)	12
ErhI	CCWWGG	1 cut(s)	12
FaeI	CATG	1 cut(s)	203
FaiI	YATR	1 cut(s)	201
FatI	CATG	1 cut(s)	199
Fnu4HI	GCNGC	1 cut(s)	276
FokI	GGATG	1 cut(s)	99
Fsp4HI	GCNGC	1 cut(s)	276
FspBI	CTAG	2 cut(s)	96, 146
GluI	GCNGC	1 cut(s)	276
GsuI	CTGGAG	1 cut(s)	102
HaeIII	GGCC	1 cut(s)	221
Hin1II	CATG	1 cut(s)	203
HindIII	AAGCTT	1 cut(s)	27
HinfI	GANTC	1 cut(s)	196
Hpy188I	TCNGA	1 cut(s)	121
Hpy188III	TCNNGA	2 cut(s)	62, 81
HpyAV	CCTTC	4 cut(s)	63, 125, 184, 211
HpyCH4III	ACNGT	1 cut(s)	126
HpyF10VI	GCNNNNNNNGC	1 cut(s)	151
Hsp92II	CATG	1 cut(s)	203
LpnPI	CCDG	3 cut(s)	66, 236, 243
Lsp1109I	GCAGC	1 cut(s)	262
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	2 cut(s)	96, 146
MaeIII	GTNAC	1 cut(s)	7
MboII	GAAGA	1 cut(s)	191
MluCI	AATT	2 cut(s)	44, 166
MnlI	CCTC	7 cut(s)	49, 77, 132, 144, 175, 233, 247
MseI	TTAA	1 cut(s)	280
MwoI	GCNNNNNNNGC	1 cut(s)	151
NheI	GCTAGC	1 cut(s)	95
NlaIII	CATG	1 cut(s)	203
NmuCI	GTSAC	1 cut(s)	7
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PfeI	GAWTC	1 cut(s)	196
PkrI	GCNGC	1 cut(s)	277
PspPI	GGNCC	1 cut(s)	220
SaqAI	TTAA	1 cut(s)	280
SatI	GCNGC	1 cut(s)	276
Sau96I	GGNCC	1 cut(s)	220
SetI	ASST	5 cut(s)	31, 41, 101, 143, 274
SfaNI	GCATC	1 cut(s)	163
Sse9I	AATT	2 cut(s)	44, 166
SspMI	CTAG	2 cut(s)	96, 146
StyI	CCWWGG	1 cut(s)	12
TaaI	ACNGT	1 cut(s)	126
TaqI	TCGA	3 cut(s)	24, 63, 72
TasI	AATT	2 cut(s)	44, 166
TfiI	GAWTC	1 cut(s)	196
Tru1I	TTAA	1 cut(s)	280
Tru9I	TTAA	1 cut(s)	280
TscAI	CASTG	1 cut(s)	242
TseFI	GTSAC	1 cut(s)	7
TseI	GCWGC	1 cut(s)	275
Tsp45I	GTSAC	1 cut(s)	7
TspDTI	ATGAA	3 cut(s)	21, 188, 203
TspRI	CASTG	1 cut(s)	242
XapI	RAATTY	1 cut(s)	166
XspI	CTAG	2 cut(s)	96, 146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.