Rorug02G0270800

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000916
Physical Location & Seq
Reverse (-)
28694422 .. 28700945
6524 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0270800.1

Sequence Viewer

Length: 795 bp
ATGCAAGCACCCAGATGGAGAAACGTCTTGATACTCAGGAATTCATTGATTTCGATGACTTGTACACCAACCCATTTAGCGTCATTTCATTCTACTCCAGCTTCATGTGAGAAGTGGAAGGACAAATGGAACTTTGATGTGAAGAGTTCAGAACAACCATCAAAGAATTTCGTCAGATATGCAACTCGTCACAAGCGAGCTGATGCAAAGAAAGCCCTTAAAAATCTTCTCTTCAACAGCGGATACTCCCCTAAAGTCTCATATCAGCACATTCAGGAAGAAGATGATTCAGGTAGCTCTCCTAAAAATCATAGATCAAAATCTTGTCGACATGCTCAGAAATCCCACCACAAGAAAATGAAACGCAAGCTCAAACGAGAGAGTTTCTCTGATGATGAAAACCATCCTGAGACAATCTTTCAGGCAACATATGGCAAGAGATGGTACACTTGGTCTTTTAACTCACAGCGTGACTCTTTTCATGATTCAGCATCTGGATTTGAGTGGAGAGAGCCTTCAAGCTGGAAAGATAGAAGTACAAGATGGGAAAACATTAGTGATGTAGAGTCTGATGATGAACAATGTACCATAGGATCATGTTCTGATAGAAAAATTCTTGGTCTCCCTTCAACAGGTCCTTTAAAGACCGAAGATGTTAAAAAAGCTTTCCATTTATCAGCTTTAAAATGGCATCCTGACAAGCATCAAGGATCTTCACAGGAAATGGCAGCAGAGAAATTTAGACTTTGTGTTAATGCTTACAATTCTCTGTGCAATGCATTATCTGCAACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase S_locus_glycop

Protein Analysis

264

Amino Acids

30.55

Weight (kDa)

9.42

Isoelectric Point (pI)

60.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 204 - 259 1.6e-08 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 328
AciI CCGC 1 cut(s) 240
AclWI GGATC 2 cut(s) 601, 718
AcsI RAATTY 4 cut(s) 40, 166, 612, 737
AdeI CACNNNGTG 1 cut(s) 470
AfaI GTAC 4 cut(s) 64, 446, 538, 586
AfiI CCNNNNNNNGG 1 cut(s) 632
AgsI TTSAA 3 cut(s) 235, 519, 630
AluBI AGCT 7 cut(s) 101, 200, 297, 370, 522, 665, 680
AluI AGCT 7 cut(s) 101, 200, 297, 370, 522, 665, 680
Alw26I GTCTC 3 cut(s) 262, 404, 626
AlwI GGATC 2 cut(s) 601, 718
AlwNI CAGNNNCTG 1 cut(s) 494
ApeKI GCWGC 1 cut(s) 728
ApoI RAATTY 4 cut(s) 40, 166, 612, 737
AspS9I GGNCC 1 cut(s) 635
AvaII GGWCC 1 cut(s) 635
BbvI GCAGC 1 cut(s) 740
BccI CCATC 5 cut(s) 9, 166, 411, 435, 537
BciVI GTATCC 1 cut(s) 236
BcoDI GTCTC 3 cut(s) 262, 404, 626
BfuI GTATCC 1 cut(s) 236
BisI GCNGC 1 cut(s) 729
BlsI GCNGC 1 cut(s) 730
Bme18I GGWCC 1 cut(s) 635
BmgT120I GGNCC 1 cut(s) 635
BmsI GCATC 4 cut(s) 193, 500, 700, 712
BplI GAGNNNNNCTC 2 cut(s) 371, 403
BpmI CTGGAG 1 cut(s) 81
BsaBI GATNNNNATC 1 cut(s) 319
BsaI GGTCTC 1 cut(s) 626
Bsc4I CCNNNNNNNGG 1 cut(s) 632
Bse3DI GCAATG 1 cut(s) 781
Bse8I GATNNNNATC 1 cut(s) 319
BseGI GGATG 2 cut(s) 403, 691
BseJI GATNNNNATC 1 cut(s) 319
BseLI CCNNNNNNNGG 1 cut(s) 632
BseMI GCAATG 1 cut(s) 781
BseMII CTCAG 3 cut(s) 49, 350, 399
BseXI GCAGC 1 cut(s) 740
BslI CCNNNNNNNGG 1 cut(s) 632
BsmAI GTCTC 3 cut(s) 262, 404, 626
Bso31I GGTCTC 1 cut(s) 626
Bsp1407I TGTACA 1 cut(s) 62
Bsp143I GATC 3 cut(s) 314, 593, 710
BspACI CCGC 1 cut(s) 240
BspCNI CTCAG 3 cut(s) 48, 349, 400
BspHI TCATGA 1 cut(s) 481
BspPI GGATC 2 cut(s) 601, 718
BspTNI GGTCTC 1 cut(s) 626
BsrDI GCAATG 1 cut(s) 781
BsrGI TGTACA 1 cut(s) 62
BssMI GATC 3 cut(s) 314, 593, 710
Bst6I CTCTTC 2 cut(s) 137, 236
BstAPI GCANNNNNTGC 1 cut(s) 785
BstAUI TGTACA 1 cut(s) 62
BstC8I GCNNGC 3 cut(s) 6, 198, 368
BstDEI CTNAG 3 cut(s) 35, 336, 408
BstENI CCTNNNNNAGG 1 cut(s) 630
BstF5I GGATG 2 cut(s) 403, 691
BstKTI GATC 3 cut(s) 317, 596, 713
BstMAI GTCTC 3 cut(s) 262, 404, 626
BstMBI GATC 3 cut(s) 314, 593, 710
BstMWI GCNNNNNNNGC 2 cut(s) 212, 785
BstNSI RCATGY 1 cut(s) 335
BstV1I GCAGC 1 cut(s) 740
BstX2I RGATCY 1 cut(s) 710
BstYI RGATCY 1 cut(s) 710
BsuI GTATCC 1 cut(s) 236
BtsCI GGATG 2 cut(s) 403, 691
Cac8I GCNNGC 3 cut(s) 6, 198, 368
CaiI CAGNNNCTG 1 cut(s) 494
CciI TCATGA 1 cut(s) 481
Cfr13I GGNCC 1 cut(s) 635
CseI GACGC 1 cut(s) 69
Csp6I GTAC 4 cut(s) 63, 445, 537, 585
CviAII CATG 4 cut(s) 105, 332, 482, 597
CviJI RGCY 9 cut(s) 101, 200, 215, 297, 370, 514, 522, 665, 680
CviKI_1 RGCY 9 cut(s) 101, 200, 215, 297, 370, 514, 522, 665, 680
CviQI GTAC 4 cut(s) 63, 445, 537, 585
DdeI CTNAG 3 cut(s) 35, 336, 408
DpnI GATC 3 cut(s) 316, 595, 712
DpnII GATC 3 cut(s) 314, 593, 710
DraI TTTAAA 2 cut(s) 642, 684
DraIII CACNNNGTG 1 cut(s) 470
Eam1104I CTCTTC 2 cut(s) 137, 236
EarI CTCTTC 2 cut(s) 137, 236
Eco31I GGTCTC 1 cut(s) 626
Eco47I GGWCC 1 cut(s) 635
EcoNI CCTNNNNNAGG 1 cut(s) 630
EcoO109I RGGNCCY 1 cut(s) 635
EcoRI GAATTC 1 cut(s) 40
EcoT22I ATGCAT 1 cut(s) 781
FaeI CATG 4 cut(s) 108, 335, 485, 600
FatI CATG 4 cut(s) 104, 331, 481, 596
FauNDI CATATG 1 cut(s) 430
FblI GTMKAC 1 cut(s) 328
Fnu4HI GCNGC 1 cut(s) 729
FokI GGATG 2 cut(s) 390, 678
Fsp4HI GCNGC 1 cut(s) 729
GluI GCNGC 1 cut(s) 729
GsuI CTGGAG 1 cut(s) 81
HgaI GACGC 1 cut(s) 69
Hin1II CATG 4 cut(s) 108, 335, 485, 600
HincII GTYRAC 1 cut(s) 329
HindII GTYRAC 1 cut(s) 329
HindIII AAGCTT 1 cut(s) 663
HinfI GANTC 4 cut(s) 287, 473, 485, 566
Hpy166II GTNNAC 3 cut(s) 65, 329, 447
Hpy188I TCNGA 6 cut(s) 151, 176, 339, 391, 571, 604
Hpy188III TCNNGA 7 cut(s) 28, 37, 275, 407, 482, 495, 695
Hpy8I GTNNAC 3 cut(s) 65, 329, 447
HpyAV CCTTC 3 cut(s) 112, 525, 636
HpyCH4IV ACGT 2 cut(s) 24, 791
HpyCH4V TGCA 6 cut(s) 4, 182, 206, 774, 779, 788
HpyF10VI GCNNNNNNNGC 2 cut(s) 212, 785
HpyF3I CTNAG 3 cut(s) 35, 336, 408
HpySE526I ACGT 2 cut(s) 24, 791
Hsp92II CATG 4 cut(s) 108, 335, 485, 600
Kzo9I GATC 3 cut(s) 314, 593, 710
Lsp1109I GCAGC 1 cut(s) 740
LweI GCATC 4 cut(s) 193, 500, 700, 712
MaeII ACGT 2 cut(s) 24, 791
MaeIII GTNAC 2 cut(s) 188, 470
MalI GATC 3 cut(s) 316, 595, 712
MboI GATC 3 cut(s) 314, 593, 710
MboII GAAGA 7 cut(s) 154, 218, 223, 290, 293, 662, 705
MflI RGATCY 1 cut(s) 710
MluCI AATT 5 cut(s) 40, 166, 612, 737, 763
MlyI GAGTC 2 cut(s) 467, 575
Mph1103I ATGCAT 1 cut(s) 781
MseI TTAA 6 cut(s) 219, 459, 641, 657, 683, 753
MslI CAYNNNNRTG 1 cut(s) 13
MspA1I CMGCKG 1 cut(s) 240
MwoI GCNNNNNNNGC 2 cut(s) 212, 785
NdeI CATATG 1 cut(s) 430
NdeII GATC 3 cut(s) 314, 593, 710
NlaIII CATG 4 cut(s) 108, 335, 485, 600
NmuCI GTSAC 2 cut(s) 188, 470
NsiI ATGCAT 1 cut(s) 781
NspI RCATGY 1 cut(s) 335
PagI TCATGA 1 cut(s) 481
PcsI WCGNNNNNNNCGW 1 cut(s) 193
PfeI GAWTC 2 cut(s) 287, 485
PkrI GCNGC 1 cut(s) 730
PleI GAGTC 2 cut(s) 467, 574
PpsI GAGTC 2 cut(s) 467, 574
PpuMI RGGWCCY 1 cut(s) 635
Psp5II RGGWCCY 1 cut(s) 635
PspPI GGNCC 1 cut(s) 635
PspPPI RGGWCCY 1 cut(s) 635
PstNI CAGNNNCTG 1 cut(s) 494
PsuI RGATCY 1 cut(s) 710
RsaI GTAC 4 cut(s) 64, 446, 538, 586
RsaNI GTAC 4 cut(s) 63, 445, 537, 585
RseI CAYNNNNRTG 1 cut(s) 13
SalI GTCGAC 1 cut(s) 327
SaqAI TTAA 6 cut(s) 219, 459, 641, 657, 683, 753
SatI GCNGC 1 cut(s) 729
Sau3AI GATC 3 cut(s) 314, 593, 710
Sau96I GGNCC 1 cut(s) 635
SchI GAGTC 2 cut(s) 467, 575
SfaNI GCATC 4 cut(s) 193, 500, 700, 712
SinI GGWCC 1 cut(s) 635
SmiMI CAYNNNNRTG 1 cut(s) 13
Sse9I AATT 5 cut(s) 40, 166, 612, 737, 763
SsiI CCGC 1 cut(s) 240
TaiI ACGT 2 cut(s) 27, 794
TaqI TCGA 2 cut(s) 53, 328
TaqII GACCGA 1 cut(s) 662
TasI AATT 5 cut(s) 40, 166, 612, 737, 763
TatI WGTACW 2 cut(s) 62, 536
TfiI GAWTC 2 cut(s) 287, 485
Tru1I TTAA 6 cut(s) 219, 459, 641, 657, 683, 753
Tru9I TTAA 6 cut(s) 219, 459, 641, 657, 683, 753
TseFI GTSAC 2 cut(s) 188, 470
TseI GCWGC 1 cut(s) 728
Tsp45I GTSAC 2 cut(s) 188, 470
TspDTI ATGAA 7 cut(s) 33, 77, 93, 374, 411, 470, 591
VpaK11BI GGWCC 1 cut(s) 635
XagI CCTNNNNNAGG 1 cut(s) 630
XapI RAATTY 4 cut(s) 40, 166, 612, 737
XceI RCATGY 1 cut(s) 335
XmiI GTMKAC 1 cut(s) 328
Zsp2I ATGCAT 1 cut(s) 781
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.