FvH4_6g34770

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
27425087 .. 27430503
5417 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g34770.t1

Sequence Viewer

Length: 3906 bp
ATGGAAGGGAACGATGCTGAAATAGGAGGTGATCAACCATTTGAACCTGCCATGGTGATGGATTTGAACTTGAACAACAGAGTACATCCAGGTTCGGCCTATTTTGATAAAGTTCTGATCATGGTCAGTTCTGCATACCACAAGGAGAGAGCAACTAATTCCTCGGCATTCATTGATTCCATTCTACATAATGCTCATTTTTTCTTATTATTTGCTCTCTACCTTGTTTGCCGTTATGCAAATCAAATCTCACTGTGTCAAGGGCTCCTCTGTCTCGCTCTTACCCCACTCTTCCTCTACTTCTATATCAATCACGCACCATTTATGTTCTTAGAGGAAGACATCAAGTGGATTCGAAGAGAGTCGAGGCTACTGAACGCTATTTCAACAGATGCAGACAGAGTTATGTACTTTAGCAATGTTATGGCAGCAAAAGCACATAAGGTCTGGGGTTTCAACACATACCGAAGTGGAGGACCTGTAAAAGGTCTGGATATAACTGAGGCAGAATGGTTGGACGAAGCCAAATCCGTGGTTCTAAGAGCAAGAGCTTTAGTTGCAAACTTTGAGGAGCAAAGGGTCAGAAGAAACTCCCATATCCGCACCAACAGAATAACTTTTGGTATGGTCAGTGAGAAGTTCCAACAGATAGAAGAGCTTTTCATTCAGACTAAGCGGATTAAGCAGGATGTAAGTGATAGCATTAAAACGGTACAGGGGATTAACATGTGCAAATCACTGGAGAGATCAAGGTCCAATTTCCTACGTTTGCTGGACAGACCTCTAGATCTGCATGGAGACGATCAACAAAGATGGGTGAGATCCAGAGGTAGAGTTGCCACTGCCGCAGCTTCGACTTCAGTTCTAGTTGAGAAGATAAACCGACTGAAAGCTCAAAATCCGGGTTTGATGCGTGACAAAACTGGAGAGCAAATGCATTCAATAAATCTACAACTGCTGCTACTGCATCCTTTCCTGAAAGATATAGAAGGAATTCGATTTGAAAGTGAAATTGAAGAGGCCTGGGTGGAGGAAGTGGAAGAGATTGTGAATGAAGCGCATCCTGTCATTGACAACTTCTTACAGAGACCAGTATACCGAACTCAGTGGTTATCAGTTATGAGCAACTGGAAGGCAACAAAGAAGCTCAGGAGAGACATAAAGTGCATCGATGCTCGGTTTGCAGAACTTTTGGAGAGGAAGGATGGATATGGCTTCAAATTTATAAGAAGAGATTCATCAAAGCTCGTGTATCAATCCTCATATCAGACCTCAGATGACACATTCATCTCATTTGTGGTAAACAGGATGAGGTTCTACCTCAATCAGGAGTCGGATGTATTAGGTGAAGTACTATATGAAGTCACATCACTATGCAATCAATTGGAAAATATGTATGCACTTGTAGGTGATGCTGGAATAGTTGAAGGCAGATATAATTCCAGAATTGCTTGGTTGGAGCAATCGACAATAATTGCTCAAAGTGCAGAAAAATCCGTAGAGACCTTTATGAAGAGTTCAGACAGTGTATGGAGGAACCATCTATTCAAGACAAGAGCTGGGATAAAGCTTTCTCGTGAGATTGACCGCATCAATCAAATTATCAATCTTTTTGTGAGATGCATGAATGCATATGGCATTGAATTACGGGAAGAGTTGGACTCGGTGGTTGGTTTGGATGAAGATATATGTGCAGTGGTTTCACAACTGACAAGCAACAGCCATCGTGACCCTGTTGTTTCTATTGTGGGGATAGGGGGCATAGGTAAGACAACACTTGCGAAGAAAATATATGGCCATGGAGTTGTTGTGGATCATTTTCCTTGCCGTGCCTGGGTTTATGCAAGTTATGTGTACTCTGATGAAAATGCATTTCTGGAAGATGTAGCAAACCAGGTCTTGAACTCTCTTAAATTTGACAGGCAAGCGAATCAAAATGCATCCTTGATCCAAAAGGTGCATGATATCTTGAAAGAGAATAAGTACCTTTTAGTTGTAGATAATATGTTGTCAATGGAAAGGTGGAATATTCTGAAATCAAAATTGCCAATAATTTCACCTCCTGGAAGCAGAATTCTACTCACCTCACGCATCAACATTTTGGCTAACTCACAAGTCAGCAGTCCTCCCCACCAACTTCGGCTGCGAACCAGAGAAGAGAGCTTGAAGTTGTTTAATCAGATTGTGCACATACGACCAACAGAAAAAATGCTAGCAAAAGAAATTTTAGGTAAATGTGGGGGTTTACCAAAATCCATTTTACATATCGGATACCTAATGTCAGGGAAAGAACAGGTGAGCACCGCTGAGGAGTTAGAAAGCGTGCTTCGGTTCATCACACAGAATGACAGACCATTGTTAGAAAACTTCATCACACAGAATGACAGACCATTGTTAGAAAACTTCACCATCAACTTGCCACCTCATCTGTTGAAGTGTCTGTCTTACTTTAAGCTCTTCCCAAAGGACTTCAAAATCCCGGCAAGGAGACTAATTGCTCTCTGGATTGCAGAAGATTTGGTTGAAGTAACCAAACATAACACAGAAACTTTTGAAGAGGTTGCTTACAAATATCTGTCAGAGTTGATTGACCGGTGCATGATTCAGGTGATTGAGAAAAAGCAGAATGGAGAAGTCAAGACATGTAGCTTGCCGTATGCTCTACAACAACTAACGCCGGAAGATATGAGAGCAGAGAGAGTCACGGATCAGTTGAACAAAAATGATCCAACCTTCAGTCATATTCATGGTGAGCTGAGCTCAAGTTTTCAAGACAGTTACAGACATATCCTCTCCATTCTATCCTTTGATACTCGAGAAGGAAATAAACCTGGAGAAGAAATAGGTACTTTTCTTCGCAAGGGCCTTGCAGGTGGTTTTTTCTTTCAGCTTCAAGTTCTTGATCTTGAACGTGTATTTAGACCAGAACTTCCCAACACCATTGGAAAGTTGAGCAAGTTGAGATATCTGGGTTTGAGGTGGACTTATCTTGAATCACTCCCAGCATCTATTGGCAATTTGCACAACCTCCAAACATTGGATGTGAAGCATACATATGTCCACAGTCTGCCTGGTTCGATATGGAAGCTGCAGAAACTTCGACATTTATACTTGAACCAGAGTCACGGGAGTAAATTTGTCCATCAACAACCTGGAAGGTCCCTGAAAAATCTTCAGACATTGTGGGGCATATTTGTTGACAAGGATAGTCCTTTGAAAGAAGGGCTGGACAAGCTGATCAATCTCAGAAAATTGGGACTGGCATTCCAATTAGATCTATCAGAGCAAAAAGGATTAGCAGATGGGATTGTAAAGCTGAAGCACCTGCAATCTTTACGAATGAGATCAATTGGTGAAATGGGTGAACCCAATGATCTAATAGACATGCCTTTGTCAGACCTTGAGAATCTTGTCACTCTAAATTTGTTTGGAAAGCTAGGCCCTTCCAACCCCATCATAGATACATTCCCCGAAAGCCTCACTGATCTTACATTGTCAGCCACTTCTCTCTCACATGATCCAATGCCAAAGTTGGAGAAGCTCCCCAACCTGAAAGTGGTCTGTTTTTACTCCAATTCTTATACAGGTAGAGAGATGACTTGCTCCATGTTAGGCTTTCCTAAGCTCGTGGTCTTAAAGTTGTGGAAGCTCGAACAACTAGAAGACTGGGTTGTGGAGGACAATGCAATGCAAAATCTGAGGGAGTTGGAGATTAGATCCTGCAAGAAATTGAATGTCCCAGGTGGGTTGAAGCACTTGAAGACCCTCACTGAATTTAAATTGACTAATATGCCAAAACAATTCGCTGCAACCATTGCAAAAACTAAGGGGCAACTATGGGATGACCTTGTCCATTCCCCTACAGTCATTGCAGTTAACTGGGAGGACTCGACTGATAAATCATAG

Protein Analysis

1302

Amino Acids

148.93

Weight (kDa)

8.23

Isoelectric Point (pI)

44.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 562 - 730 1.3e-24 NB-ARC domain
WHD_DRP PF23559 819 - 884 1.5e-15 Disease resistance protein Winged helix domain
LRR_14 PF23598 962 - 1261 5.9e-38 Leucine-rich repeat region
LRR_8 PF13855 986 - 1040 9.7e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000657)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g34770
malus_domestica MD17G1025700.v1.1
prunus_persica Prupe.3G040600_v2.0.a1 Prupe.3G040800_v2.0.a1 Prupe.3G041000_v2.0.a1 Prupe.3G041100_v2.0.a1 Prupe.3G041500_v2.0.a1 Prupe.4G109400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037700_v2.0.a1
pyrus_communis pycom09g10040 pycom17g16000
rosa_chinensis RchiOBHm_Chr2g0145591 RchiOBHm_Chr2g0145611
rosa_laevigata RLG00000020146 RLG00000020149 RLG00000020151 RLG00000020154
rosa_multiflora Rmu_co7986250.1_g000001 Rmu_co8305779.1_g000001 Rmu_sc0002718.1_g000011 Rmu_sc0002835.1_g000009 Rmu_sc0002835.1_g000016 Rmu_sc0003046.1_g000007 Rmu_sc0003046.1_g000010 Rmu_sc0004445.1_g000006 Rmu_sc0004810.1_g000002 Rmu_sc0006477.1_g000008 Rmu_sc0014329.1_g000001 Rmu_sc0020976.1_g000003 Rmu_sc0021168.1_g000001 Rmu_sc0022199.1_g000001 Rmu_sc0036991.1_g000001 Rmu_sc0041497.1_g000003
rosa_roxburghii Rroxscaffold_152G00434560 Rroxscaffold_152G00434570 Rroxscaffold_152G00434600 Rroxscaffold_152G00434610 Rroxscaffold_2G00100630 Rroxscaffold_2G00100640 Rroxscaffold_2G00100660 Rroxscaffold_2G00100670 Rroxscaffold_2G00100680 Rroxscaffold_2G00100690
rosa_rugosa Rorug02G0392300 Rorug02G0392400 Rorug02G0392400
rosa_samantha Rh2AG445700 Rh2AG445800 Rh2AG446000 Rh2AG446100 Rh2AG446300 Rh2AG446600 Rh2BG457400 Rh2BG457500 Rh2BG457600 Rh2BG457900 Rh2BG458300 Rh2CG432300 Rh2CG432400 Rh2CG432500 Rh2CG432700 Rh2CG432900 Rh2CG433000 Rh2CG433300 Rh2DG467100 Rh2DG467200 Rh2DG467300 Rh2DG467600 Rh2DG467900 Rh3DG194100
rosa_wichuraiana Rw2G036420 Rw2G036450 Rw2G036470 Rw3G014900 Rw3G014920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1226
AarI CACCTGC 2 cut(s) 2861, 3333
Acc36I ACCTGC 3 cut(s) 55, 2861, 3333
AccB7I CCANNNNNTGG 1 cut(s) 3037
AccI GTMKAC 1 cut(s) 1095
AciI CCGC 5 cut(s) 601, 676, 846, 1588, 2304
AclWI GGATC 7 cut(s) 816, 1821, 1942, 2715, 2720, 3512, 3711
AcoI YGGCCR 1 cut(s) 1795
AcsI RAATTY 8 cut(s) 993, 1220, 1913, 2073, 2223, 3134, 3421, 3773
AcuI CTGAAG 4 cut(s) 843, 2719, 3158, 3338
AfaI GTAC 7 cut(s) 84, 410, 714, 1353, 1856, 1985, 2848
AfiI CCNNNNNNNGG 5 cut(s) 485, 1327, 1834, 3037, 3556
AflIII ACRYGT 3 cut(s) 726, 2642, 2911
AgeI ACCGGT 1 cut(s) 2592
AjnI CCWGG 9 cut(s) 88, 1022, 1832, 1893, 2062, 2830, 3070, 3151, 3739
Alw21I GWGCWC 3 cut(s) 2190, 2303, 2762
Alw26I GTCTC 6 cut(s) 278, 792, 1081, 1149, 1496, 2482
Alw44I GTGCAC 1 cut(s) 2186
AlwI GGATC 7 cut(s) 816, 1821, 1942, 2715, 2720, 3512, 3711
Ama87I CYCGRG 1 cut(s) 2814
AoxI GGCC 5 cut(s) 96, 1020, 1795, 2863, 3439
ApaLI GTGCAC 1 cut(s) 2186
ApeKI GCWGC 6 cut(s) 428, 848, 958, 2143, 3088, 3806
ApoI RAATTY 8 cut(s) 993, 1220, 1913, 2073, 2223, 3134, 3421, 3773
AsiGI ACCGGT 1 cut(s) 2592
Asp700I GAANNNNTTC 2 cut(s) 993, 1234
AspLEI GCGC 1 cut(s) 1060
AspS9I GGNCC 5 cut(s) 476, 753, 2863, 3159, 3440
AsuC2I CCSGG 2 cut(s) 903, 2480
AsuII TTCGAA 1 cut(s) 355
AsuNHI GCTAGC 1 cut(s) 2212
AvaI CYCGRG 1 cut(s) 2814
AvaII GGWCC 3 cut(s) 476, 753, 3159
BaeGI GKGCMC 1 cut(s) 2190
BalI TGGCCA 1 cut(s) 1797
BanII GRGCYC 2 cut(s) 267, 2762
BauI CACGAG 3 cut(s) 1247, 1575, 3626
BbsI GAAGAC 3 cut(s) 345, 3669, 3767
Bbv12I GWGCWC 3 cut(s) 2190, 2303, 2762
BbvCI CCTCAGC 1 cut(s) 2307
BbvI GCAGC 6 cut(s) 440, 860, 945, 2130, 3075, 3793
BccI CCATC 9 cut(s) 52, 807, 1199, 1548, 1731, 2417, 3150, 3296, 3461
BceAI ACGGC 3 cut(s) 216, 1812, 2638
BcgI CGANNNNNNTGC 2 cut(s) 3080, 3114
BciT130I CCWGG 9 cut(s) 90, 1024, 1834, 1895, 2064, 2832, 3072, 3153, 3741
BciVI GTATCC 1 cut(s) 2264
BclI TGATCA 3 cut(s) 31, 117, 3237
BcnI CCSGG 2 cut(s) 903, 2480
BcoDI GTCTC 6 cut(s) 278, 792, 1081, 1149, 1496, 2482
BfaI CTAG 5 cut(s) 785, 866, 2213, 3437, 3659
BfmI CTRYAG 2 cut(s) 3089, 3861
BfuAI ACCTGC 3 cut(s) 55, 2861, 3333
BfuI GTATCC 1 cut(s) 2264
BglII AGATCT 2 cut(s) 787, 3274
BisI GCNGC 7 cut(s) 429, 846, 849, 959, 2144, 3089, 3807
BlpI GCTNAGC 1 cut(s) 2756
BlsI GCNGC 7 cut(s) 430, 847, 850, 960, 2145, 3090, 3808
BmcAI AGTACT 1 cut(s) 1353
Bme18I GGWCC 3 cut(s) 476, 753, 3159
BmeT110I CYCGRG 1 cut(s) 2814
BmgT120I GGNCC 5 cut(s) 476, 753, 2863, 3159, 3440
BmiI GGNNCC 3 cut(s) 266, 1538, 3161
BmrI ACTGGG 2 cut(s) 3676, 3889
BmtI GCTAGC 1 cut(s) 2216
BmuI ACTGGG 2 cut(s) 3676, 3889
BpiI GAAGAC 3 cut(s) 345, 3669, 3767
BplI GAGNNNNNCTC 4 cut(s) 1646, 1678, 2744, 2776
BpmI CTGGAG 3 cut(s) 761, 945, 2853
Bpu10I CCTNAGC 3 cut(s) 1148, 2307, 3621
Bpu1102I GCTNAGC 1 cut(s) 2756
Bpu14I TTCGAA 1 cut(s) 355
BpuEI CTTGAG 2 cut(s) 2746, 3422
BpuMI CCSGG 2 cut(s) 903, 2480
Bsa29I ATCGAT 1 cut(s) 1170
BsaI GGTCTC 2 cut(s) 1081, 1496
BsaJI CCNNGG 7 cut(s) 51, 162, 531, 1023, 1798, 1833, 3739
BsaWI WCCGGW 1 cut(s) 2592
BsaXI ACNNNNNCTCC 4 cut(s) 465, 495, 1794, 1824
Bsc4I CCNNNNNNNGG 5 cut(s) 485, 1327, 1834, 3037, 3556
Bse118I RCCGGY 1 cut(s) 2592
Bse1I ACTGG 7 cut(s) 744, 928, 1091, 1133, 3264, 3671, 3884
Bse3DI GCAATG 4 cut(s) 424, 3693, 3813, 3867
BseBI CCWGG 9 cut(s) 90, 1024, 1834, 1895, 2064, 2832, 3072, 3153, 3741
BseCI ATCGAT 1 cut(s) 1170
BseDI CCNNGG 7 cut(s) 51, 162, 531, 1023, 1798, 1833, 3739
BseLI CCNNNNNNNGG 5 cut(s) 485, 1327, 1834, 3037, 3556
BseMI GCAATG 4 cut(s) 424, 3693, 3813, 3867
BseMII CTCAG 8 cut(s) 492, 1118, 1162, 1287, 2298, 2747, 3259, 3689
BseNI ACTGG 7 cut(s) 744, 928, 1091, 1133, 3264, 3671, 3884
BseRI GAGGAG 3 cut(s) 257, 584, 2324
BseSI GKGCMC 1 cut(s) 2190
BseXI GCAGC 6 cut(s) 440, 860, 945, 2130, 3075, 3793
BseYI CCCAGC 2 cut(s) 1559, 3001
BsgI GTGCAG 2 cut(s) 1506, 1713
BshFI GGCC 5 cut(s) 98, 1022, 1797, 2865, 3441
BshTI ACCGGT 1 cut(s) 2592
BshVI ATCGAT 1 cut(s) 1170
BsiHKAI GWGCWC 3 cut(s) 2190, 2303, 2762
BsiHKCI CYCGRG 1 cut(s) 2814
BsiSI CCGG 4 cut(s) 902, 2480, 2593, 2678
BslFI GGGAC 3 cut(s) 3145, 3270, 3722
BslI CCNNNNNNNGG 5 cut(s) 485, 1327, 1834, 3037, 3556
BsmAI GTCTC 6 cut(s) 278, 792, 1081, 1149, 1496, 2482
BsmBI CGTCTC 1 cut(s) 792
BsmFI GGGAC 3 cut(s) 3145, 3270, 3722
BsmI GAATGC 4 cut(s) 167, 937, 1633, 3263
BsnI GGCC 5 cut(s) 98, 1022, 1797, 2865, 3441
Bso31I GGTCTC 2 cut(s) 1081, 1496
BsoBI CYCGRG 1 cut(s) 2814
Bsp119I TTCGAA 1 cut(s) 355
Bsp1286I GDGCHC 4 cut(s) 267, 2190, 2303, 2762
Bsp1720I GCTNAGC 1 cut(s) 2756
Bsp19I CCATGG 2 cut(s) 51, 1798
BspACI CCGC 5 cut(s) 601, 676, 846, 1588, 2304
BspANI GGCC 5 cut(s) 98, 1022, 1797, 2865, 3441
BspCNI CTCAG 8 cut(s) 493, 1117, 1161, 1286, 2299, 2748, 3258, 3690
BspDI ATCGAT 1 cut(s) 1170
BspLI GGNNCC 3 cut(s) 266, 1538, 3161
BspMAI CTGCAG 1 cut(s) 3093
BspMI ACCTGC 3 cut(s) 55, 2861, 3333
BspOI GCTAGC 1 cut(s) 2216
BspPI GGATC 7 cut(s) 816, 1821, 1942, 2715, 2720, 3512, 3711
BspQI GCTCTTC 2 cut(s) 648, 2462
BspT104I TTCGAA 1 cut(s) 355
BspTNI GGTCTC 2 cut(s) 1081, 1496
BsrDI GCAATG 4 cut(s) 424, 3693, 3813, 3867
BsrFI RCCGGY 1 cut(s) 2592
BsrI ACTGG 7 cut(s) 744, 928, 1091, 1133, 3264, 3671, 3884
BssAI RCCGGY 1 cut(s) 2592
BssECI CCNNGG 7 cut(s) 51, 162, 531, 1023, 1798, 1833, 3739
BssNAI GTATAC 1 cut(s) 1096
BssSI CACGAG 3 cut(s) 1247, 1575, 3626
BssT1I CCWWGG 2 cut(s) 51, 1798
Bst1107I GTATAC 1 cut(s) 1096
Bst2BI CACGAG 3 cut(s) 1247, 1575, 3626
Bst2UI CCWGG 9 cut(s) 90, 1024, 1834, 1895, 2064, 2832, 3072, 3153, 3741
Bst4CI ACNGT 6 cut(s) 255, 712, 1526, 2777, 3065, 3865
BstAPI GCANNNNNTGC 1 cut(s) 3815
BstBI TTCGAA 1 cut(s) 355
BstC8I GCNNGC 4 cut(s) 1926, 2214, 2324, 2651
BstDSI CCRYGG 3 cut(s) 51, 531, 1798
BstENI CCTNNNNNAGG 2 cut(s) 483, 1325
BstHHI GCGC 1 cut(s) 1060
BstMAI GTCTC 6 cut(s) 278, 792, 1081, 1149, 1496, 2482
BstMWI GCNNNNNNNGC 9 cut(s) 434, 557, 682, 845, 964, 1181, 1484, 3232, 3815
BstNI CCWGG 9 cut(s) 90, 1024, 1834, 1895, 2064, 2832, 3072, 3153, 3741
BstNSI RCATGY 3 cut(s) 730, 2646, 3388
BstSFI CTRYAG 2 cut(s) 3089, 3861
BstSLI GKGCMC 1 cut(s) 2190
BstV1I GCAGC 6 cut(s) 440, 860, 945, 2130, 3075, 3793
BstV2I GAAGAC 3 cut(s) 345, 3669, 3767
BstX2I RGATCY 4 cut(s) 787, 821, 3274, 3716
BstXI CCANNNNNNTGG 2 cut(s) 58, 532
BstYI RGATCY 4 cut(s) 787, 821, 3274, 3716
BstZ17I GTATAC 1 cut(s) 1096
Bsu15I ATCGAT 1 cut(s) 1170
BsuI GTATCC 1 cut(s) 2264
BsuRI GGCC 5 cut(s) 98, 1022, 1797, 2865, 3441
BsuTUI ATCGAT 1 cut(s) 1170
BtgI CCRYGG 3 cut(s) 51, 531, 1798
BtsI GCAGTG 2 cut(s) 840, 1701
BtsIMutI CAGTG 9 cut(s) 251, 637, 737, 840, 1112, 1531, 1701, 3480, 3768
BveI ACCTGC 3 cut(s) 55, 2861, 3333
Cac8I GCNNGC 4 cut(s) 1926, 2214, 2324, 2651
CfoI GCGC 1 cut(s) 1060
Cfr10I RCCGGY 1 cut(s) 2592
Cfr13I GGNCC 5 cut(s) 476, 753, 2863, 3159, 3440
ClaI ATCGAT 1 cut(s) 1170
CsiI ACCWGGT 1 cut(s) 1893
Csp6I GTAC 7 cut(s) 83, 409, 713, 1352, 1855, 1984, 2847
CspAI ACCGGT 1 cut(s) 2592
CviQI GTAC 7 cut(s) 83, 409, 713, 1352, 1855, 1984, 2847
DraI TTTAAA 1 cut(s) 3778
EaeI YGGCCR 1 cut(s) 1795
Ecl136II GAGCTC 1 cut(s) 2760
Eco130I CCWWGG 2 cut(s) 51, 1798
Eco147I AGGCCT 1 cut(s) 1022
Eco24I GRGCYC 2 cut(s) 267, 2762
Eco31I GGTCTC 2 cut(s) 1081, 1496
Eco32I GATATC 2 cut(s) 1966, 2966
Eco47I GGWCC 3 cut(s) 476, 753, 3159
Eco53kI GAGCTC 1 cut(s) 2760
Eco57I CTGAAG 4 cut(s) 843, 2719, 3158, 3338
Eco88I CYCGRG 1 cut(s) 2814
EcoICRI GAGCTC 1 cut(s) 2760
EcoNI CCTNNNNNAGG 2 cut(s) 483, 1325
EcoO109I RGGNCCY 4 cut(s) 476, 2863, 3159, 3440
EcoRI GAATTC 2 cut(s) 993, 2073
EcoRII CCWGG 9 cut(s) 88, 1022, 1832, 1893, 2062, 2830, 3070, 3151, 3739
EcoRV GATATC 2 cut(s) 1966, 2966
EcoT14I CCWWGG 2 cut(s) 51, 1798
EcoT22I ATGCAT 5 cut(s) 939, 1625, 1633, 1873, 1942
EcoT38I GRGCYC 2 cut(s) 267, 2762
ErhI CCWWGG 2 cut(s) 51, 1798
Esp3I CGTCTC 1 cut(s) 792
FaqI GGGAC 3 cut(s) 3145, 3270, 3722
FauNDI CATATG 2 cut(s) 1633, 3055
FbaI TGATCA 3 cut(s) 31, 117, 3237
FblI GTMKAC 1 cut(s) 1095
Fnu4HI GCNGC 7 cut(s) 429, 846, 849, 959, 2144, 3089, 3807
FriOI GRGCYC 2 cut(s) 267, 2762
Fsp4HI GCNGC 7 cut(s) 429, 846, 849, 959, 2144, 3089, 3807
FspBI CTAG 5 cut(s) 785, 866, 2213, 3437, 3659
GlaI GCGC 1 cut(s) 1059
GluI GCNGC 7 cut(s) 429, 846, 849, 959, 2144, 3089, 3807
GsaI CCCAGC 2 cut(s) 1563, 3005
GsuI CTGGAG 3 cut(s) 761, 945, 2853
HaeIII GGCC 5 cut(s) 98, 1022, 1797, 2865, 3441
HapII CCGG 4 cut(s) 902, 2480, 2593, 2678
HhaI GCGC 1 cut(s) 1060
Hin6I GCGC 1 cut(s) 1058
HinP1I GCGC 1 cut(s) 1058
HincII GTYRAC 2 cut(s) 3199, 3877
HindII GTYRAC 2 cut(s) 3199, 3877
HindIII AAGCTT 1 cut(s) 1568
HpaI GTTAAC 1 cut(s) 3877
HpaII CCGG 4 cut(s) 902, 2480, 2593, 2678
HpyAV CCTTC 9 cut(s) 983, 1126, 1195, 1421, 2743, 2813, 3150, 3215, 3453
HpyCH4III ACNGT 6 cut(s) 255, 712, 1526, 2777, 3065, 3865
HpyCH4IV ACGT 2 cut(s) 766, 2911
HpyF10VI GCNNNNNNNGC 9 cut(s) 434, 557, 682, 845, 964, 1181, 1484, 3232, 3815
HpySE526I ACGT 2 cut(s) 766, 2911
HspAI GCGC 1 cut(s) 1058
Ksp22I TGATCA 3 cut(s) 31, 117, 3237
KspAI GTTAAC 1 cut(s) 3877
LguI GCTCTTC 2 cut(s) 648, 2462
LmnI GCTCC 5 cut(s) 270, 571, 1459, 3546, 3608
Lsp1109I GCAGC 6 cut(s) 440, 860, 945, 2130, 3075, 3793
MabI ACCWGGT 1 cut(s) 1893
MaeI CTAG 5 cut(s) 785, 866, 2213, 3437, 3659
MaeII ACGT 2 cut(s) 766, 2911
MaeIII GTNAC 8 cut(s) 914, 1363, 1727, 2527, 2701, 2777, 3122, 3412
MfeI CAATTG 2 cut(s) 1382, 3348
MflI RGATCY 4 cut(s) 787, 821, 3274, 3716
MhlI GDGCHC 4 cut(s) 267, 2190, 2303, 2762
MlsI TGGCCA 1 cut(s) 1797
MluNI TGGCCA 1 cut(s) 1797
MlyI GAGTC 6 cut(s) 371, 1340, 1655, 2709, 3130, 3881
MmeI TCCRAC 9 cut(s) 495, 667, 1314, 1437, 1638, 2753, 3471, 3513, 3687
Mox20I TGGCCA 1 cut(s) 1797
Mph1103I ATGCAT 5 cut(s) 939, 1625, 1633, 1873, 1942
MroXI GAANNNNTTC 2 cut(s) 993, 1234
MscI TGGCCA 1 cut(s) 1797
MseI TTAA 9 cut(s) 681, 705, 723, 1911, 2175, 2451, 3635, 3777, 3876
MslI CAYNNNNRTG 4 cut(s) 56, 1372, 2745, 3054
Msp20I TGGCCA 1 cut(s) 1797
MspA1I CMGCKG 1 cut(s) 2306
MspI CCGG 4 cut(s) 902, 2480, 2593, 2678
MunI CAATTG 2 cut(s) 1382, 3348
Mva1269I GAATGC 4 cut(s) 167, 937, 1633, 3263
MvaI CCWGG 9 cut(s) 90, 1024, 1834, 1895, 2064, 2832, 3072, 3153, 3741
MwoI GCNNNNNNNGC 9 cut(s) 434, 557, 682, 845, 964, 1181, 1484, 3232, 3815
NciI CCSGG 2 cut(s) 903, 2480
NcoI CCATGG 2 cut(s) 51, 1798
NdeI CATATG 2 cut(s) 1633, 3055
NheI GCTAGC 1 cut(s) 2212
NlaIV GGNNCC 3 cut(s) 266, 1538, 3161
NmeAIII GCCGAG 1 cut(s) 143
NmuCI GTSAC 6 cut(s) 914, 1363, 1727, 2701, 3122, 3412
NsiI ATGCAT 5 cut(s) 939, 1625, 1633, 1873, 1942
NspI RCATGY 3 cut(s) 730, 2646, 3388
NspV TTCGAA 1 cut(s) 355
PaeR7I CTCGAG 1 cut(s) 2814
PaqCI CACCTGC 2 cut(s) 2861, 3333
PceI AGGCCT 1 cut(s) 1022
PciI ACATGT 2 cut(s) 726, 2642
PciSI GCTCTTC 2 cut(s) 648, 2462
PctI GAATGC 4 cut(s) 167, 937, 1633, 3263
PdmI GAANNNNTTC 2 cut(s) 993, 1234
PfeI GAWTC 7 cut(s) 176, 352, 1235, 1930, 2602, 2993, 3406
PflFI GACNNNGTC 1 cut(s) 3848
PflMI CCANNNNNTGG 1 cut(s) 3037
PfoI TCCNGGA 1 cut(s) 2062
PinAI ACCGGT 1 cut(s) 2592
PkrI GCNGC 7 cut(s) 430, 847, 850, 960, 2145, 3090, 3808
PleI GAGTC 6 cut(s) 370, 1339, 1655, 2708, 3129, 3881
PpsI GAGTC 6 cut(s) 370, 1339, 1655, 2708, 3129, 3881
PpuMI RGGWCCY 2 cut(s) 476, 3159
PscI ACATGT 2 cut(s) 726, 2642
PsiI TTATAA 1 cut(s) 1226
Psp124BI GAGCTC 1 cut(s) 2762
Psp5II RGGWCCY 2 cut(s) 476, 3159
Psp6I CCWGG 9 cut(s) 88, 1022, 1832, 1893, 2062, 2830, 3070, 3151, 3739
PspFI CCCAGC 2 cut(s) 1559, 3001
PspGI CCWGG 9 cut(s) 88, 1022, 1832, 1893, 2062, 2830, 3070, 3151, 3739
PspN4I GGNNCC 3 cut(s) 266, 1538, 3161
PspPI GGNCC 5 cut(s) 476, 753, 2863, 3159, 3440
PspPPI RGGWCCY 2 cut(s) 476, 3159
PstI CTGCAG 1 cut(s) 3093
PsuI RGATCY 4 cut(s) 787, 821, 3274, 3716
PsyI GACNNNGTC 1 cut(s) 3848
RsaI GTAC 7 cut(s) 84, 410, 714, 1353, 1856, 1985, 2848
RsaNI GTAC 7 cut(s) 83, 409, 713, 1352, 1855, 1984, 2847
RseI CAYNNNNRTG 4 cut(s) 56, 1372, 2745, 3054
SacI GAGCTC 1 cut(s) 2762
SapI GCTCTTC 2 cut(s) 648, 2462
SaqAI TTAA 9 cut(s) 681, 705, 723, 1911, 2175, 2451, 3635, 3777, 3876
SatI GCNGC 7 cut(s) 429, 846, 849, 959, 2144, 3089, 3807
Sau96I GGNCC 5 cut(s) 476, 753, 2863, 3159, 3440
ScaI AGTACT 1 cut(s) 1353
SchI GAGTC 6 cut(s) 371, 1340, 1655, 2709, 3130, 3881
SduI GDGCHC 4 cut(s) 267, 2190, 2303, 2762
SexAI ACCWGGT 1 cut(s) 1893
SfcI CTRYAG 2 cut(s) 3089, 3861
Sfr274I CTCGAG 1 cut(s) 2814
SfuI TTCGAA 1 cut(s) 355
SinI GGWCC 3 cut(s) 476, 753, 3159
SlaI CTCGAG 1 cut(s) 2814
SmiI ATTTAAAT 1 cut(s) 3778
SmiMI CAYNNNNRTG 4 cut(s) 56, 1372, 2745, 3054
SmlI CTYRAG 3 cut(s) 2761, 2814, 3401
SmoI CTYRAG 3 cut(s) 2761, 2814, 3401
SseBI AGGCCT 1 cut(s) 1022
SsiI CCGC 5 cut(s) 601, 676, 846, 1588, 2304
SspI AATATT 1 cut(s) 2029
SspMI CTAG 5 cut(s) 785, 866, 2213, 3437, 3659
SstI GAGCTC 1 cut(s) 2762
StuI AGGCCT 1 cut(s) 1022
StyI CCWWGG 2 cut(s) 51, 1798
SwaI ATTTAAAT 1 cut(s) 3778
TaaI ACNGT 6 cut(s) 255, 712, 1526, 2777, 3065, 3865
TaiI ACGT 2 cut(s) 769, 2914
TatI WGTACW 4 cut(s) 82, 408, 1351, 1854
TauI GCSGC 1 cut(s) 848
TfiI GAWTC 7 cut(s) 176, 352, 1235, 1930, 2602, 2993, 3406
Tru1I TTAA 9 cut(s) 681, 705, 723, 1911, 2175, 2451, 3635, 3777, 3876
Tru9I TTAA 9 cut(s) 681, 705, 723, 1911, 2175, 2451, 3635, 3777, 3876
TscAI CASTG 9 cut(s) 258, 637, 744, 847, 1112, 1531, 1701, 3487, 3775
TseFI GTSAC 6 cut(s) 914, 1363, 1727, 2701, 3122, 3412
TseI GCWGC 6 cut(s) 428, 848, 958, 2143, 3088, 3806
Tsp45I GTSAC 6 cut(s) 914, 1363, 1727, 2701, 3122, 3412
TspGWI ACGGA 3 cut(s) 520, 1486, 2720
TspRI CASTG 9 cut(s) 258, 637, 744, 847, 1112, 1531, 1701, 3487, 3775
Tth111I GACNNNGTC 1 cut(s) 3848
Van91I CCANNNNNTGG 1 cut(s) 3037
VneI GTGCAC 1 cut(s) 2186
VpaK11BI GGWCC 3 cut(s) 476, 753, 3159
XagI CCTNNNNNAGG 2 cut(s) 483, 1325
XapI RAATTY 8 cut(s) 993, 1220, 1913, 2073, 2223, 3134, 3421, 3773
XbaI TCTAGA 1 cut(s) 784
XceI RCATGY 3 cut(s) 730, 2646, 3388
XcmI CCANNNNNNNNNTGG 3 cut(s) 3068, 3149, 3553
XhoI CTCGAG 1 cut(s) 2814
XmiI GTMKAC 1 cut(s) 1095
XmnI GAANNNNTTC 2 cut(s) 993, 1234
XspI CTAG 5 cut(s) 785, 866, 2213, 3437, 3659
ZrmI AGTACT 1 cut(s) 1353
Zsp2I ATGCAT 5 cut(s) 939, 1625, 1633, 1873, 1942
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.