Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000657

Physical Location & Seq

Genomic Coordinates Forward (+)

64803030 .. 64809123

Gene Structure 6094 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG457900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGAGTCCGTGATCGGAATCCCTTGGCTGCGGTTCAAAACCTCGATCGACTCCAAGGATTTGAGGATGACTTCGTTCACCGAAGCCTCGTCAAAGATTTGGGACTCGATTGTTCGGTGGATGGGCGGAGAATTGACTACCCTAGTTGCGCATTGGCCGATCAAACTATACATCAACGGTCATGGTGCAAAAGTTTCAGGGAAAGATGTTAATAAAGCAGAGGAGTTGAGAAAGGTGCTACAATACATCAGACAGAATGATAAACCATTGATACAGAACTTCACCACAAGGTTTATTGACTCTGTTCCCAATCTATTCTCCTGTCTTTCTTACTTGAAACTCTTTCCCAAGGACTTTGAAATTCCTGCACGGAGATTAATAGCTTTGTGGATTGCAGAAGATTTGGTAGAAGTAAGCGAACATGATTCAGAAACTGATGAAGATGTTGCATATAAGTATCTAATACAGTTGATTGATGGAGGCGTGATTCAAGTGGTTGAAAGAAAGCACAATGGTGAAGTCAAGAATTGTCGCTTGCCATATGCTGTGCAGAAACTAGAGTTGGAAAATATGAGTTCAAGGAGAATTACAGATCATTTGTTCATATTCATGGTGAAAGCTCAAGTATTCCAAGCAGTTACAGAGGATAGTCCTTTGAAGGATGGGATGGACAAGTTGCTTAACCTCAGAAAATTGGGATTGGAATTCCAATTAACCTCGTCGGAGCAAGAGCCATTGCAAAAGGTAGAGGGCAAATTTGGGAGGGCCTTAACCACTCCCCAGCAATCACTGCAGATAACTGGGAATCTACCGAGTAAATTCATACTCATTTATCCAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0033554 GO:0034050 GO:0036094 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

280

Amino Acids

32.07

Weight (kDa)

6.98

Isoelectric Point (pI)

45.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_DRP	PF23559	114 - 181	4.5e-13	Disease resistance protein Winged helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000657)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g34770
malus_domestica	MD17G1025700.v1.1
prunus_persica	Prupe.3G040600_v2.0.a1 Prupe.3G040800_v2.0.a1 Prupe.3G041000_v2.0.a1 Prupe.3G041100_v2.0.a1 Prupe.3G041500_v2.0.a1 Prupe.4G109400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037700_v2.0.a1
pyrus_communis	pycom09g10040 pycom17g16000
rosa_chinensis	RchiOBHm_Chr2g0145591 RchiOBHm_Chr2g0145611
rosa_laevigata	RLG00000020146 RLG00000020149 RLG00000020151 RLG00000020154
rosa_multiflora	Rmu_co7986250.1_g000001 Rmu_co8305779.1_g000001 Rmu_sc0002718.1_g000011 Rmu_sc0002835.1_g000009 Rmu_sc0002835.1_g000016 Rmu_sc0003046.1_g000007 Rmu_sc0003046.1_g000010 Rmu_sc0004445.1_g000006 Rmu_sc0004810.1_g000002 Rmu_sc0006477.1_g000008 Rmu_sc0014329.1_g000001 Rmu_sc0020976.1_g000003 Rmu_sc0021168.1_g000001 Rmu_sc0022199.1_g000001 Rmu_sc0036991.1_g000001 Rmu_sc0041497.1_g000003
rosa_roxburghii	Rroxscaffold_152G00434560 Rroxscaffold_152G00434570 Rroxscaffold_152G00434600 Rroxscaffold_152G00434610 Rroxscaffold_2G00100630 Rroxscaffold_2G00100640 Rroxscaffold_2G00100660 Rroxscaffold_2G00100670 Rroxscaffold_2G00100680 Rroxscaffold_2G00100690
rosa_rugosa	Rorug02G0392300 Rorug02G0392400 Rorug02G0392400
rosa_samantha	Rh2AG445700 Rh2AG445800 Rh2AG446000 Rh2AG446100 Rh2AG446300 Rh2AG446600 Rh2BG457400 Rh2BG457500 Rh2BG457600 Rh2BG457900 Rh2BG458300 Rh2CG432300 Rh2CG432400 Rh2CG432500 Rh2CG432700 Rh2CG432900 Rh2CG433000 Rh2CG433300 Rh2DG467100 Rh2DG467200 Rh2DG467300 Rh2DG467600 Rh2DG467900 Rh3DG194100
rosa_wichuraiana	Rw2G036420 Rw2G036450 Rw2G036470 Rw3G014900 Rw3G014920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	150
AciI	CCGC	2 cut(s)	31, 126
AcoI	YGGCCR	1 cut(s)	155
AcsI	RAATTY	4 cut(s)	360, 704, 755, 818
AgsI	TTSAA	7 cut(s)	37, 337, 359, 491, 500, 579, 658
AjnI	CCWGG	1 cut(s)	835
AjuI	GAANNNNNNNTTGG	2 cut(s)	545, 577
AleI	CACNNNNGTG	1 cut(s)	513
AluBI	AGCT	2 cut(s)	383, 620
AluI	AGCT	2 cut(s)	383, 620
AlwNI	CAGNNNCTG	1 cut(s)	434
AoxI	GGCC	2 cut(s)	155, 765
ApeKI	GCWGC	1 cut(s)	28
ApoI	RAATTY	4 cut(s)	360, 704, 755, 818
AseI	ATTAAT	1 cut(s)	377
AspLEI	GCGC	1 cut(s)	151
AspS9I	GGNCC	1 cut(s)	765
AsuHPI	GGTGA	4 cut(s)	70, 274, 527, 625
BbvI	GCAGC	1 cut(s)	15
BccI	CCATC	4 cut(s)	115, 470, 656, 661
BciT130I	CCWGG	1 cut(s)	837
BfaI	CTAG	2 cut(s)	143, 557
BfmI	CTRYAG	1 cut(s)	791
BisI	GCNGC	1 cut(s)	29
BlsI	GCNGC	1 cut(s)	30
Bme1390I	CCNGG	1 cut(s)	837
BmgT120I	GGNCC	1 cut(s)	765
BmrFI	CCNGG	1 cut(s)	837
BmrI	ACTGGG	1 cut(s)	810
BmuI	ACTGGG	1 cut(s)	810
BpuEI	CTTGAG	1 cut(s)	606
BsaBI	GATNNNNATC	1 cut(s)	17
BsaJI	CCNNGG	4 cut(s)	23, 54, 348, 836
Bse1I	ACTGG	1 cut(s)	805
Bse3DI	GCAATG	1 cut(s)	734
Bse8I	GATNNNNATC	1 cut(s)	17
BseBI	CCWGG	1 cut(s)	837
BseDI	CCNNGG	4 cut(s)	23, 54, 348, 836
BseGI	GGATG	4 cut(s)	72, 126, 667, 672
BseJI	GATNNNNATC	1 cut(s)	17
BseMI	GCAATG	1 cut(s)	734
BseMII	CTCAG	1 cut(s)	700
BseNI	ACTGG	1 cut(s)	805
BseRI	GAGGAG	1 cut(s)	236
BseXI	GCAGC	1 cut(s)	15
BseYI	CCCAGC	1 cut(s)	780
BsgI	GTGCAG	2 cut(s)	351, 569
Bsh1285I	CGRYCG	1 cut(s)	48
BshFI	GGCC	2 cut(s)	157, 767
BsiEI	CGRYCG	1 cut(s)	48
BslFI	GGGAC	1 cut(s)	116
BsmFI	GGGAC	1 cut(s)	116
BsnI	GGCC	2 cut(s)	157, 767
Bsp143I	GATC	4 cut(s)	12, 45, 159, 592
BspACI	CCGC	2 cut(s)	31, 126
BspANI	GGCC	2 cut(s)	157, 767
BspCNI	CTCAG	1 cut(s)	699
BspMAI	CTGCAG	1 cut(s)	795
BsrDI	GCAATG	1 cut(s)	734
BsrI	ACTGG	1 cut(s)	805
BssECI	CCNNGG	4 cut(s)	23, 54, 348, 836
BssMI	GATC	4 cut(s)	12, 45, 159, 592
BssT1I	CCWWGG	3 cut(s)	23, 54, 348
Bst2UI	CCWGG	1 cut(s)	837
Bst4CI	ACNGT	2 cut(s)	179, 468
BstAPI	GCANNNNNTGC	1 cut(s)	790
BstC8I	GCNNGC	1 cut(s)	536
BstDEI	CTNAG	1 cut(s)	686
BstF5I	GGATG	4 cut(s)	72, 126, 667, 672
BstHHI	GCGC	1 cut(s)	151
BstKTI	GATC	4 cut(s)	15, 48, 162, 595
BstMBI	GATC	4 cut(s)	12, 45, 159, 592
BstMCI	CGRYCG	1 cut(s)	48
BstMWI	GCNNNNNNNGC	1 cut(s)	790
BstNI	CCWGG	1 cut(s)	837
BstSCI	CCNGG	1 cut(s)	835
BstSFI	CTRYAG	1 cut(s)	791
BstV1I	GCAGC	1 cut(s)	15
BsuRI	GGCC	2 cut(s)	157, 767
BtsCI	GGATG	4 cut(s)	72, 126, 667, 672
BtsI	GCAGTG	1 cut(s)	788
BtsIMutI	CAGTG	1 cut(s)	788
Cac8I	GCNNGC	1 cut(s)	536
CaiI	CAGNNNCTG	1 cut(s)	434
CfoI	GCGC	1 cut(s)	151
Cfr13I	GGNCC	1 cut(s)	765
CviAII	CATG	3 cut(s)	182, 422, 610
CviJI	RGCY	7 cut(s)	28, 86, 157, 383, 620, 733, 767
CviKI_1	RGCY	7 cut(s)	28, 86, 157, 383, 620, 733, 767
DdeI	CTNAG	1 cut(s)	686
DpnI	GATC	4 cut(s)	14, 47, 161, 594
DpnII	GATC	4 cut(s)	12, 45, 159, 592
EaeI	YGGCCR	1 cut(s)	155
EciI	GGCGGA	1 cut(s)	141
Eco130I	CCWWGG	3 cut(s)	23, 54, 348
EcoO109I	RGGNCCY	1 cut(s)	765
EcoRI	GAATTC	1 cut(s)	704
EcoRII	CCWGG	1 cut(s)	835
EcoT14I	CCWWGG	3 cut(s)	23, 54, 348
ErhI	CCWWGG	3 cut(s)	23, 54, 348
FaeI	CATG	3 cut(s)	185, 425, 613
FaqI	GGGAC	1 cut(s)	116
FatI	CATG	3 cut(s)	181, 421, 609
FauNDI	CATATG	1 cut(s)	541
Fnu4HI	GCNGC	1 cut(s)	29
FokI	GGATG	4 cut(s)	79, 133, 674, 679
Fsp4HI	GCNGC	1 cut(s)	29
FspBI	CTAG	2 cut(s)	143, 557
FspI	TGCGCA	1 cut(s)	150
GlaI	GCGC	1 cut(s)	150
GluI	GCNGC	1 cut(s)	29
GsaI	CCCAGC	1 cut(s)	784
HaeIII	GGCC	2 cut(s)	157, 767
HhaI	GCGC	1 cut(s)	151
Hin1II	CATG	3 cut(s)	185, 425, 613
Hin6I	GCGC	1 cut(s)	149
HinP1I	GCGC	1 cut(s)	149
HinfI	GANTC	8 cut(s)	5, 18, 50, 104, 299, 425, 487, 805
HphI	GGTGA	4 cut(s)	70, 274, 527, 625
Hpy166II	GTNNAC	1 cut(s)	78
Hpy188I	TCNGA	5 cut(s)	17, 251, 430, 689, 724
Hpy188III	TCNNGA	1 cut(s)	523
Hpy8I	GTNNAC	1 cut(s)	78
Hpy99I	CGWCG	1 cut(s)	724
HpyAV	CCTTC	1 cut(s)	652
HpyCH4III	ACNGT	2 cut(s)	179, 468
HpyCH4V	TGCA	7 cut(s)	188, 368, 395, 449, 550, 739, 793
HpyF10VI	GCNNNNNNNGC	1 cut(s)	790
HpyF3I	CTNAG	1 cut(s)	686
Hsp92II	CATG	3 cut(s)	185, 425, 613
HspAI	GCGC	1 cut(s)	149
Kzo9I	GATC	4 cut(s)	12, 45, 159, 592
LmnI	GCTCC	1 cut(s)	724
LpnPI	CCDG	6 cut(s)	183, 334, 378, 786, 794, 822
Lsp1109I	GCAGC	1 cut(s)	15
MaeI	CTAG	2 cut(s)	143, 557
MaeIII	GTNAC	1 cut(s)	637
MalI	GATC	4 cut(s)	14, 47, 161, 594
MboI	GATC	4 cut(s)	12, 45, 159, 592
MboII	GAAGA	2 cut(s)	410, 452
MluCI	AATT	9 cut(s)	131, 360, 526, 585, 692, 704, 710, 755, 818
MlyI	GAGTC	4 cut(s)	14, 44, 98, 293
MmeI	TCCRAC	2 cut(s)	543, 702
MseI	TTAA	5 cut(s)	210, 377, 681, 713, 770
MslI	CAYNNNNRTG	2 cut(s)	513, 608
MspR9I	CCNGG	1 cut(s)	837
MvaI	CCWGG	1 cut(s)	837
MwoI	GCNNNNNNNGC	1 cut(s)	790
NdeI	CATATG	1 cut(s)	541
NdeII	GATC	4 cut(s)	12, 45, 159, 592
NlaIII	CATG	3 cut(s)	185, 425, 613
NsbI	TGCGCA	1 cut(s)	150
OliI	CACNNNNGTG	1 cut(s)	513
PfeI	GAWTC	4 cut(s)	18, 425, 487, 805
PkrI	GCNGC	1 cut(s)	30
Ple19I	CGATCG	1 cut(s)	48
PleI	GAGTC	4 cut(s)	13, 44, 98, 293
PpsI	GAGTC	4 cut(s)	13, 44, 98, 293
PshBI	ATTAAT	1 cut(s)	377
Psp6I	CCWGG	1 cut(s)	835
PspFI	CCCAGC	1 cut(s)	780
PspGI	CCWGG	1 cut(s)	835
PspPI	GGNCC	1 cut(s)	765
PstI	CTGCAG	1 cut(s)	795
PstNI	CAGNNNCTG	1 cut(s)	434
PvuI	CGATCG	1 cut(s)	48
RseI	CAYNNNNRTG	2 cut(s)	513, 608
SaqAI	TTAA	5 cut(s)	210, 377, 681, 713, 770
SatI	GCNGC	1 cut(s)	29
Sau3AI	GATC	4 cut(s)	12, 45, 159, 592
Sau96I	GGNCC	1 cut(s)	765
SchI	GAGTC	4 cut(s)	14, 44, 98, 293
ScrFI	CCNGG	1 cut(s)	837
SetI	ASST	8 cut(s)	44, 237, 293, 385, 622, 687, 719, 747
SfcI	CTRYAG	1 cut(s)	791
SmiMI	CAYNNNNRTG	2 cut(s)	513, 608
SmlI	CTYRAG	1 cut(s)	621
SmoI	CTYRAG	1 cut(s)	621
Sse9I	AATT	9 cut(s)	131, 360, 526, 585, 692, 704, 710, 755, 818
SsiI	CCGC	2 cut(s)	31, 126
SspMI	CTAG	2 cut(s)	143, 557
StyD4I	CCNGG	1 cut(s)	835
StyI	CCWWGG	3 cut(s)	23, 54, 348
TaaI	ACNGT	2 cut(s)	179, 468
TaqI	TCGA	3 cut(s)	44, 48, 107
TasI	AATT	9 cut(s)	131, 360, 526, 585, 692, 704, 710, 755, 818
TfiI	GAWTC	4 cut(s)	18, 425, 487, 805
Tru1I	TTAA	5 cut(s)	210, 377, 681, 713, 770
Tru9I	TTAA	5 cut(s)	210, 377, 681, 713, 770
TscAI	CASTG	1 cut(s)	795
TseI	GCWGC	1 cut(s)	28
TspDTI	ATGAA	4 cut(s)	453, 592, 598, 811
TspGWI	ACGGA	1 cut(s)	385
TspRI	CASTG	1 cut(s)	795
VspI	ATTAAT	1 cut(s)	377
XapI	RAATTY	4 cut(s)	360, 704, 755, 818
XspI	CTAG	2 cut(s)	143, 557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.