Rmu_sc0041497.1_g000003

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0041497.1
Physical Location & Seq
Forward (+)
1258 .. 1635
378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0041497.1_g000003.1.cds

Sequence Viewer

Length: 378 bp
atgaatacgccaaatgttttgcagaatggcaagtatccccaatccattcttttctttgatactcgagaaggaaataaaccaggagaggaaataggctactttctttgcaagggcattgctggtagtttctttcagcagttgctggttcttgacttggagcgtgtattcagacctcaattaccgaccaccataggtaaattaaagaagctgaaatatctaggcttaaggtggacatacctagaggaaatgccatcatctataggcaatttggtggaactccaaactctagaattgaagcatactagtattacaactatctcaacttcaatttggaaactgaagaaccttctgcacctgtactcgaatgagaattgttga

Protein Analysis

125

Amino Acids

14.37

Weight (kDa)

8.91

Isoelectric Point (pI)

35.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000657)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g34770
malus_domestica MD17G1025700.v1.1
prunus_persica Prupe.3G040600_v2.0.a1 Prupe.3G040800_v2.0.a1 Prupe.3G041000_v2.0.a1 Prupe.3G041100_v2.0.a1 Prupe.3G041500_v2.0.a1 Prupe.4G109400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037700_v2.0.a1
pyrus_communis pycom09g10040 pycom17g16000
rosa_chinensis RchiOBHm_Chr2g0145591 RchiOBHm_Chr2g0145611
rosa_laevigata RLG00000020146 RLG00000020149 RLG00000020151 RLG00000020154
rosa_multiflora Rmu_co7986250.1_g000001 Rmu_co8305779.1_g000001 Rmu_sc0002718.1_g000011 Rmu_sc0002835.1_g000009 Rmu_sc0002835.1_g000016 Rmu_sc0003046.1_g000007 Rmu_sc0003046.1_g000010 Rmu_sc0004445.1_g000006 Rmu_sc0004810.1_g000002 Rmu_sc0006477.1_g000008 Rmu_sc0014329.1_g000001 Rmu_sc0020976.1_g000003 Rmu_sc0021168.1_g000001 Rmu_sc0022199.1_g000001 Rmu_sc0036991.1_g000001 Rmu_sc0041497.1_g000003
rosa_roxburghii Rroxscaffold_152G00434560 Rroxscaffold_152G00434570 Rroxscaffold_152G00434600 Rroxscaffold_152G00434610 Rroxscaffold_2G00100630 Rroxscaffold_2G00100640 Rroxscaffold_2G00100660 Rroxscaffold_2G00100670 Rroxscaffold_2G00100680 Rroxscaffold_2G00100690
rosa_rugosa Rorug02G0392300 Rorug02G0392400 Rorug02G0392400
rosa_samantha Rh2AG445700 Rh2AG445800 Rh2AG446000 Rh2AG446100 Rh2AG446300 Rh2AG446600 Rh2BG457400 Rh2BG457500 Rh2BG457600 Rh2BG457900 Rh2BG458300 Rh2CG432300 Rh2CG432400 Rh2CG432500 Rh2CG432700 Rh2CG432900 Rh2CG433000 Rh2CG433300 Rh2DG467100 Rh2DG467200 Rh2DG467300 Rh2DG467600 Rh2DG467900 Rh3DG194100
rosa_wichuraiana Rw2G036420 Rw2G036450 Rw2G036470 Rw3G014900 Rw3G014920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 359
AfaI GTAC 1 cut(s) 359
AflII CTTAAG 1 cut(s) 223
AgsI TTSAA 2 cut(s) 295, 327
AhlI ACTAGT 1 cut(s) 302
AjnI CCWGG 1 cut(s) 79
AluBI AGCT 1 cut(s) 208
AluI AGCT 1 cut(s) 208
AlwNI CAGNNNCTG 1 cut(s) 142
Ama87I CYCGRG 1 cut(s) 63
AvaI CYCGRG 1 cut(s) 63
BccI CCATC 1 cut(s) 259
BciT130I CCWGG 1 cut(s) 81
BciVI GTATCC 1 cut(s) 45
BcuI ACTAGT 1 cut(s) 302
BfaI CTAG 4 cut(s) 218, 239, 287, 303
BfmI CTRYAG 1 cut(s) 258
BfrI CTTAAG 1 cut(s) 223
BfuI GTATCC 1 cut(s) 45
Bme1390I CCNGG 1 cut(s) 81
BmeT110I CYCGRG 1 cut(s) 63
BmrFI CCNGG 1 cut(s) 81
Bse3DI GCAATG 1 cut(s) 114
BseBI CCWGG 1 cut(s) 81
BseMI GCAATG 1 cut(s) 114
BsgI GTGCAG 1 cut(s) 335
BsiHKCI CYCGRG 1 cut(s) 63
BsoBI CYCGRG 1 cut(s) 63
BspTI CTTAAG 1 cut(s) 223
BsrDI GCAATG 1 cut(s) 114
Bst2UI CCWGG 1 cut(s) 81
BstAFI CTTAAG 1 cut(s) 223
BstNI CCWGG 1 cut(s) 81
BstSCI CCNGG 1 cut(s) 79
BstSFI CTRYAG 1 cut(s) 258
BsuI GTATCC 1 cut(s) 45
CaiI CAGNNNCTG 1 cut(s) 142
Csp6I GTAC 1 cut(s) 358
CviJI RGCY 3 cut(s) 96, 208, 222
CviKI_1 RGCY 3 cut(s) 96, 208, 222
CviQI GTAC 1 cut(s) 358
Eco57I CTGAAG 1 cut(s) 359
Eco88I CYCGRG 1 cut(s) 63
EcoRII CCWGG 1 cut(s) 79
FaiI YATR 4 cut(s) 191, 235, 260, 300
FspBI CTAG 4 cut(s) 218, 239, 287, 303
Hpy166II GTNNAC 1 cut(s) 231
Hpy188I TCNGA 1 cut(s) 170
Hpy188III TCNNGA 3 cut(s) 65, 149, 287
Hpy8I GTNNAC 1 cut(s) 231
HpyAV CCTTC 2 cut(s) 62, 356
HpyCH4V TGCA 3 cut(s) 22, 108, 352
LmnI GCTCC 1 cut(s) 157
LpnPI CCDG 5 cut(s) 66, 93, 105, 128, 368
MaeI CTAG 4 cut(s) 218, 239, 287, 303
MboII GAAGA 1 cut(s) 352
MluCI AATT 6 cut(s) 176, 197, 265, 290, 327, 370
MnlI CCTC 3 cut(s) 79, 183, 235
MseI TTAA 2 cut(s) 200, 224
MspCI CTTAAG 1 cut(s) 223
MspR9I CCNGG 1 cut(s) 81
MvaI CCWGG 1 cut(s) 81
PaeR7I CTCGAG 1 cut(s) 63
Psp6I CCWGG 1 cut(s) 79
PspGI CCWGG 1 cut(s) 79
PstNI CAGNNNCTG 1 cut(s) 142
RsaI GTAC 1 cut(s) 359
RsaNI GTAC 1 cut(s) 358
SaqAI TTAA 2 cut(s) 200, 224
ScrFI CCNGG 1 cut(s) 81
SetI ASST 7 cut(s) 175, 196, 210, 230, 240, 348, 357
SfcI CTRYAG 1 cut(s) 258
Sfr274I CTCGAG 1 cut(s) 63
SlaI CTCGAG 1 cut(s) 63
SmlI CTYRAG 2 cut(s) 63, 223
SmoI CTYRAG 2 cut(s) 63, 223
SpeI ACTAGT 1 cut(s) 302
Sse9I AATT 6 cut(s) 176, 197, 265, 290, 327, 370
SspMI CTAG 4 cut(s) 218, 239, 287, 303
StyD4I CCNGG 1 cut(s) 79
TaqI TCGA 2 cut(s) 64, 362
TasI AATT 6 cut(s) 176, 197, 265, 290, 327, 370
TatI WGTACW 1 cut(s) 357
Tru1I TTAA 2 cut(s) 200, 224
Tru9I TTAA 2 cut(s) 200, 224
TspDTI ATGAA 1 cut(s) 17
Vha464I CTTAAG 1 cut(s) 223
XbaI TCTAGA 1 cut(s) 286
XhoI CTCGAG 1 cut(s) 63
XspI CTAG 4 cut(s) 218, 239, 287, 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.