Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000657

Physical Location & Seq

Genomic Coordinates Reverse (-)

58833114 .. 58833545

Gene Structure 432 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG432300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGAGGGAACTGAAGACACTATCAGGTGTATTTCTAGATAAGGGGAATCTTGTGACCAACCTTCAAAAGTTGGGATTGACATTCCAGCTGACGCAGGCAGAGCAAAAGGTCATAGAAAGATGGATTGTGCAGCTGAATGACTTGGAGTCTTTGAAGTTGGCATCTATTAATGAGAAGAGTGCACCTCAAGTTCTGAGATTGAAACCTCTTTTACGCCTCAAAAAACTGTCCACCCTATACTTGTCTGGAAAGCTTGAAAACCCATCCATTGAACTCCCTGAAAGTCTTATTCATTTTACCTTATCAGCCTCTGGAATTGTTAATGATCCAATGCCAAAGTTAGGGAAGCTTCCAAATCTCAAATCCCTTGCTTTGAACTCTGATTGTTATCAAGGAACAGACATGGTTTGCTCAGTGAATGACTTTCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009506 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0030054 GO:0033554 GO:0034050 GO:0036094 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0071944 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

143

Amino Acids

15.92

Weight (kDa)

8.91

Isoelectric Point (pI)

24.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000657)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g34770
malus_domestica	MD17G1025700.v1.1
prunus_persica	Prupe.3G040600_v2.0.a1 Prupe.3G040800_v2.0.a1 Prupe.3G041000_v2.0.a1 Prupe.3G041100_v2.0.a1 Prupe.3G041500_v2.0.a1 Prupe.4G109400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037700_v2.0.a1
pyrus_communis	pycom09g10040 pycom17g16000
rosa_chinensis	RchiOBHm_Chr2g0145591 RchiOBHm_Chr2g0145611
rosa_laevigata	RLG00000020146 RLG00000020149 RLG00000020151 RLG00000020154
rosa_multiflora	Rmu_co7986250.1_g000001 Rmu_co8305779.1_g000001 Rmu_sc0002718.1_g000011 Rmu_sc0002835.1_g000009 Rmu_sc0002835.1_g000016 Rmu_sc0003046.1_g000007 Rmu_sc0003046.1_g000010 Rmu_sc0004445.1_g000006 Rmu_sc0004810.1_g000002 Rmu_sc0006477.1_g000008 Rmu_sc0014329.1_g000001 Rmu_sc0020976.1_g000003 Rmu_sc0021168.1_g000001 Rmu_sc0022199.1_g000001 Rmu_sc0036991.1_g000001 Rmu_sc0041497.1_g000003
rosa_roxburghii	Rroxscaffold_152G00434560 Rroxscaffold_152G00434570 Rroxscaffold_152G00434600 Rroxscaffold_152G00434610 Rroxscaffold_2G00100630 Rroxscaffold_2G00100640 Rroxscaffold_2G00100660 Rroxscaffold_2G00100670 Rroxscaffold_2G00100680 Rroxscaffold_2G00100690
rosa_rugosa	Rorug02G0392300 Rorug02G0392400 Rorug02G0392400
rosa_samantha	Rh2AG445700 Rh2AG445800 Rh2AG446000 Rh2AG446100 Rh2AG446300 Rh2AG446600 Rh2BG457400 Rh2BG457500 Rh2BG457600 Rh2BG457900 Rh2BG458300 Rh2CG432300 Rh2CG432400 Rh2CG432500 Rh2CG432700 Rh2CG432900 Rh2CG433000 Rh2CG433300 Rh2DG467100 Rh2DG467200 Rh2DG467300 Rh2DG467600 Rh2DG467900 Rh3DG194100
rosa_wichuraiana	Rw2G036420 Rw2G036450 Rw2G036470 Rw3G014900 Rw3G014920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	320
AcuI	CTGAAG	1 cut(s)	32
AfiI	CCNNNNNNNGG	1 cut(s)	341
AgsI	TTSAA	6 cut(s)	65, 154, 202, 257, 272, 376
AhdI	GACNNNNNGTC	1 cut(s)	145
AluBI	AGCT	4 cut(s)	88, 133, 253, 349
AluI	AGCT	4 cut(s)	88, 133, 253, 349
Alw21I	GWGCWC	1 cut(s)	184
Alw44I	GTGCAC	1 cut(s)	180
AlwI	GGATC	1 cut(s)	320
AlwNI	CAGNNNCTG	1 cut(s)	311
ApaLI	GTGCAC	1 cut(s)	180
ApeKI	GCWGC	1 cut(s)	130
AseI	ATTAAT	1 cut(s)	168
BaeGI	GKGCMC	1 cut(s)	184
BbsI	GAAGAC	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	184
BbvI	GCAGC	1 cut(s)	142
BccI	CCATC	2 cut(s)	114, 271
BfaI	CTAG	2 cut(s)	35, 430
BisI	GCNGC	1 cut(s)	131
BlsI	GCNGC	1 cut(s)	132
BmeRI	GACNNNNNGTC	1 cut(s)	145
BmsI	GCATC	1 cut(s)	170
BpiI	GAAGAC	1 cut(s)	20
BplI	GAGNNNNNCTC	2 cut(s)	169, 201
BpuEI	CTTGAG	1 cut(s)	171
BsaBI	GATNNNNATC	1 cut(s)	387
Bsc4I	CCNNNNNNNGG	1 cut(s)	341
Bse8I	GATNNNNATC	1 cut(s)	387
BseGI	GGATG	1 cut(s)	263
BseJI	GATNNNNATC	1 cut(s)	387
BseLI	CCNNNNNNNGG	1 cut(s)	341
BseMII	CTCAG	2 cut(s)	185, 426
BseSI	GKGCMC	1 cut(s)	184
BseXI	GCAGC	1 cut(s)	142
BsgI	GTGCAG	1 cut(s)	149
BsiHKAI	GWGCWC	1 cut(s)	184
BslI	CCNNNNNNNGG	1 cut(s)	341
Bsp1286I	GDGCHC	1 cut(s)	184
Bsp143I	GATC	1 cut(s)	325
BspCNI	CTCAG	2 cut(s)	186, 425
BspPI	GGATC	1 cut(s)	320
BssMI	GATC	1 cut(s)	325
Bst4CI	ACNGT	1 cut(s)	228
Bst6I	CTCTTC	1 cut(s)	170
BstC8I	GCNNGC	1 cut(s)	96
BstDEI	CTNAG	2 cut(s)	194, 412
BstF5I	GGATG	1 cut(s)	263
BstKTI	GATC	1 cut(s)	328
BstMBI	GATC	1 cut(s)	325
BstMWI	GCNNNNNNNGC	1 cut(s)	100
BstSLI	GKGCMC	1 cut(s)	184
BstV1I	GCAGC	1 cut(s)	142
BstV2I	GAAGAC	1 cut(s)	20
BtsCI	GGATG	1 cut(s)	263
BtsIMutI	CAGTG	1 cut(s)	420
Cac8I	GCNNGC	1 cut(s)	96
CaiI	CAGNNNCTG	1 cut(s)	311
CseI	GACGC	1 cut(s)	100
CviAII	CATG	1 cut(s)	403
CviJI	RGCY	5 cut(s)	88, 133, 253, 308, 349
CviKI_1	RGCY	5 cut(s)	88, 133, 253, 308, 349
DdeI	CTNAG	2 cut(s)	194, 412
DpnI	GATC	1 cut(s)	327
DpnII	GATC	1 cut(s)	325
DriI	GACNNNNNGTC	1 cut(s)	145
Eam1104I	CTCTTC	1 cut(s)	170
Eam1105I	GACNNNNNGTC	1 cut(s)	145
EarI	CTCTTC	1 cut(s)	170
Eco57I	CTGAAG	1 cut(s)	32
FaeI	CATG	1 cut(s)	406
FaiI	YATR	3 cut(s)	113, 238, 404
FatI	CATG	1 cut(s)	402
Fnu4HI	GCNGC	1 cut(s)	131
FokI	GGATG	1 cut(s)	250
Fsp4HI	GCNGC	1 cut(s)	131
FspBI	CTAG	2 cut(s)	35, 430
GluI	GCNGC	1 cut(s)	131
HgaI	GACGC	1 cut(s)	100
Hin1II	CATG	1 cut(s)	406
HindIII	AAGCTT	2 cut(s)	251, 347
HinfI	GANTC	2 cut(s)	46, 146
Hpy166II	GTNNAC	2 cut(s)	182, 231
Hpy188I	TCNGA	2 cut(s)	195, 382
Hpy188III	TCNNGA	3 cut(s)	35, 246, 312
Hpy8I	GTNNAC	2 cut(s)	182, 231
HpyAV	CCTTC	1 cut(s)	71
HpyCH4III	ACNGT	1 cut(s)	228
HpyCH4V	TGCA	2 cut(s)	130, 182
HpyF10VI	GCNNNNNNNGC	1 cut(s)	100
HpyF3I	CTNAG	2 cut(s)	194, 412
Hsp92II	CATG	1 cut(s)	406
Kzo9I	GATC	1 cut(s)	325
LpnPI	CCDG	6 cut(s)	9, 80, 98, 231, 291, 297
Lsp1109I	GCAGC	1 cut(s)	142
LweI	GCATC	1 cut(s)	170
MaeI	CTAG	2 cut(s)	35, 430
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	1 cut(s)	327
MboI	GATC	1 cut(s)	325
MboII	GAAGA	2 cut(s)	25, 187
MhlI	GDGCHC	1 cut(s)	184
MluCI	AATT	1 cut(s)	315
MlyI	GAGTC	1 cut(s)	155
MnlI	CCTC	4 cut(s)	195, 216, 227, 319
MseI	TTAA	2 cut(s)	168, 321
MspA1I	CMGCKG	2 cut(s)	88, 133
MwoI	GCNNNNNNNGC	1 cut(s)	100
NdeII	GATC	1 cut(s)	325
NlaIII	CATG	1 cut(s)	406
NmuCI	GTSAC	1 cut(s)	52
PfeI	GAWTC	1 cut(s)	46
PkrI	GCNGC	1 cut(s)	132
PleI	GAGTC	1 cut(s)	154
PpsI	GAGTC	1 cut(s)	154
PshBI	ATTAAT	1 cut(s)	168
PstNI	CAGNNNCTG	1 cut(s)	311
PvuII	CAGCTG	2 cut(s)	88, 133
SaqAI	TTAA	2 cut(s)	168, 321
SatI	GCNGC	1 cut(s)	131
Sau3AI	GATC	1 cut(s)	325
SchI	GAGTC	1 cut(s)	155
SduI	GDGCHC	1 cut(s)	184
SfaNI	GCATC	1 cut(s)	170
SmlI	CTYRAG	1 cut(s)	186
SmoI	CTYRAG	1 cut(s)	186
Sse9I	AATT	1 cut(s)	315
SspMI	CTAG	2 cut(s)	35, 430
TaaI	ACNGT	1 cut(s)	228
TasI	AATT	1 cut(s)	315
TfiI	GAWTC	1 cut(s)	46
Tru1I	TTAA	2 cut(s)	168, 321
Tru9I	TTAA	2 cut(s)	168, 321
TscAI	CASTG	1 cut(s)	420
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	1 cut(s)	130
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	1 cut(s)	281
TspRI	CASTG	1 cut(s)	420
VneI	GTGCAC	1 cut(s)	180
VspI	ATTAAT	1 cut(s)	168
XbaI	TCTAGA	1 cut(s)	34
XspI	CTAG	2 cut(s)	35, 430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.