Rmu_sc0002835.1_g000009

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002835.1
Physical Location & Seq
Reverse (-)
34065 .. 34844
780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002835.1_g000009.1.cds

Sequence Viewer

Length: 780 bp
atggtgcaaaagtttcaggtttcttttcataattggcattgttgggtgattcttaagctagcaaaagagattttaggaaaatgtgggggtttacctctagccatcttatgtcttggatatctaatgtcagggaaagatgttaataaagcagaggagttgagaaaggtgctacaatacatcagacagaatgataaaccattgatacagaacttcaccacaaggtttattgactctgttcccaatctattctcctgtctttcttacttgaaactctttcccaaggactttgaaattcctgcacggagattaatagctttgtggattgcagaagatttggtagaagtaagcgaacatgattcagaaactgatgaagatgttgcatataagtatctaatacagttgattgatggaggcgtgactcaagtggttgaaagaaagcacaatggtgaagtcaagaattgtcgcttgccatatgctgtgcagaaactagagttggaaaatatgagttcaaggagaattacagatcatttcgaccgaagtgatgaatcatttgttcatattcatggtgaaagctcaagtattccaagcagttacagaggtattgtctccattctctcctttggtactcgagaaggaaataaacctggggcagaaataggcaactttttacgaggggtaattgcaggttggttcttccaaagacaaaaagttctcgatcttgaaagactattcagacctgaattgcccgataccataggaagactaagtaagttgagataa

Protein Analysis

259

Amino Acids

29.77

Weight (kDa)

8.22

Isoelectric Point (pI)

46.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000657)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g34770
malus_domestica MD17G1025700.v1.1
prunus_persica Prupe.3G040600_v2.0.a1 Prupe.3G040800_v2.0.a1 Prupe.3G041000_v2.0.a1 Prupe.3G041100_v2.0.a1 Prupe.3G041500_v2.0.a1 Prupe.4G109400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037700_v2.0.a1
pyrus_communis pycom09g10040 pycom17g16000
rosa_chinensis RchiOBHm_Chr2g0145591 RchiOBHm_Chr2g0145611
rosa_laevigata RLG00000020146 RLG00000020149 RLG00000020151 RLG00000020154
rosa_multiflora Rmu_co7986250.1_g000001 Rmu_co8305779.1_g000001 Rmu_sc0002718.1_g000011 Rmu_sc0002835.1_g000009 Rmu_sc0002835.1_g000016 Rmu_sc0003046.1_g000007 Rmu_sc0003046.1_g000010 Rmu_sc0004445.1_g000006 Rmu_sc0004810.1_g000002 Rmu_sc0006477.1_g000008 Rmu_sc0014329.1_g000001 Rmu_sc0020976.1_g000003 Rmu_sc0021168.1_g000001 Rmu_sc0022199.1_g000001 Rmu_sc0036991.1_g000001 Rmu_sc0041497.1_g000003
rosa_roxburghii Rroxscaffold_152G00434560 Rroxscaffold_152G00434570 Rroxscaffold_152G00434600 Rroxscaffold_152G00434610 Rroxscaffold_2G00100630 Rroxscaffold_2G00100640 Rroxscaffold_2G00100660 Rroxscaffold_2G00100670 Rroxscaffold_2G00100680 Rroxscaffold_2G00100690
rosa_rugosa Rorug02G0392300 Rorug02G0392400 Rorug02G0392400
rosa_samantha Rh2AG445700 Rh2AG445800 Rh2AG446000 Rh2AG446100 Rh2AG446300 Rh2AG446600 Rh2BG457400 Rh2BG457500 Rh2BG457600 Rh2BG457900 Rh2BG458300 Rh2CG432300 Rh2CG432400 Rh2CG432500 Rh2CG432700 Rh2CG432900 Rh2CG433000 Rh2CG433300 Rh2DG467100 Rh2DG467200 Rh2DG467300 Rh2DG467600 Rh2DG467900 Rh3DG194100
rosa_wichuraiana Rw2G036420 Rw2G036450 Rw2G036470 Rw3G014900 Rw3G014920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 674
AcsI RAATTY 1 cut(s) 291
AfaI GTAC 1 cut(s) 625
AflII CTTAAG 1 cut(s) 53
AgsI TTSAA 5 cut(s) 268, 290, 431, 510, 722
AjnI CCWGG 1 cut(s) 643
AjuI GAANNNNNNNTTGG 2 cut(s) 476, 508
AleI CACNNNNGTG 1 cut(s) 444
AluBI AGCT 3 cut(s) 58, 314, 573
AluI AGCT 3 cut(s) 58, 314, 573
Alw26I GTCTC 1 cut(s) 610
AlwNI CAGNNNCTG 1 cut(s) 365
Ama87I CYCGRG 1 cut(s) 627
ApoI RAATTY 1 cut(s) 291
AseI ATTAAT 1 cut(s) 308
AsuHPI GGTGA 4 cut(s) 58, 205, 458, 578
AsuNHI GCTAGC 1 cut(s) 58
AvaI CYCGRG 1 cut(s) 627
BbsI GAAGAC 1 cut(s) 766
BccI CCATC 2 cut(s) 110, 401
BciT130I CCWGG 1 cut(s) 645
BcoDI GTCTC 1 cut(s) 610
BfaI CTAG 3 cut(s) 59, 98, 488
BfrI CTTAAG 1 cut(s) 53
BfuAI ACCTGC 1 cut(s) 674
Bme1390I CCNGG 1 cut(s) 645
BmeT110I CYCGRG 1 cut(s) 627
BmrFI CCNGG 1 cut(s) 645
BmtI GCTAGC 1 cut(s) 62
BpiI GAAGAC 1 cut(s) 766
BpuEI CTTGAG 2 cut(s) 405, 559
BsaJI CCNNGG 2 cut(s) 279, 644
BseBI CCWGG 1 cut(s) 645
BseDI CCNNGG 2 cut(s) 279, 644
BseRI GAGGAG 1 cut(s) 167
BsgI GTGCAG 2 cut(s) 282, 500
Bsh1285I CGRYCG 1 cut(s) 535
BsiEI CGRYCG 1 cut(s) 535
BsiHKCI CYCGRG 1 cut(s) 627
BsmAI GTCTC 1 cut(s) 610
BsoBI CYCGRG 1 cut(s) 627
Bsp143I GATC 2 cut(s) 523, 715
BspMI ACCTGC 1 cut(s) 674
BspOI GCTAGC 1 cut(s) 62
BspTI CTTAAG 1 cut(s) 53
BssECI CCNNGG 2 cut(s) 279, 644
BssMI GATC 2 cut(s) 523, 715
BssT1I CCWWGG 1 cut(s) 279
Bst2UI CCWGG 1 cut(s) 645
Bst4CI ACNGT 1 cut(s) 399
BstAFI CTTAAG 1 cut(s) 53
BstC8I GCNNGC 2 cut(s) 60, 467
BstDEI CTNAG 1 cut(s) 764
BstKTI GATC 2 cut(s) 526, 718
BstMAI GTCTC 1 cut(s) 610
BstMBI GATC 2 cut(s) 523, 715
BstMCI CGRYCG 1 cut(s) 535
BstNI CCWGG 1 cut(s) 645
BstSCI CCNGG 1 cut(s) 643
BstV2I GAAGAC 1 cut(s) 766
BveI ACCTGC 1 cut(s) 674
Cac8I GCNNGC 2 cut(s) 60, 467
CaiI CAGNNNCTG 1 cut(s) 365
Csp6I GTAC 1 cut(s) 624
CviAII CATG 2 cut(s) 353, 563
CviJI RGCY 4 cut(s) 58, 101, 314, 573
CviKI_1 RGCY 4 cut(s) 58, 101, 314, 573
CviQI GTAC 1 cut(s) 624
DdeI CTNAG 1 cut(s) 764
DpnI GATC 2 cut(s) 525, 717
DpnII GATC 2 cut(s) 523, 715
Eco130I CCWWGG 1 cut(s) 279
Eco32I GATATC 1 cut(s) 119
Eco88I CYCGRG 1 cut(s) 627
EcoRII CCWGG 1 cut(s) 643
EcoRV GATATC 1 cut(s) 119
EcoT14I CCWWGG 1 cut(s) 279
ErhI CCWWGG 1 cut(s) 279
FaeI CATG 2 cut(s) 356, 566
FatI CATG 2 cut(s) 352, 562
FauNDI CATATG 1 cut(s) 472
FspBI CTAG 3 cut(s) 59, 98, 488
Hin1II CATG 2 cut(s) 356, 566
HinfI GANTC 5 cut(s) 49, 230, 356, 418, 545
HphI GGTGA 4 cut(s) 58, 205, 458, 578
Hpy166II GTNNAC 1 cut(s) 92
Hpy188I TCNGA 3 cut(s) 182, 361, 734
Hpy188III TCNNGA 4 cut(s) 454, 629, 713, 719
Hpy8I GTNNAC 1 cut(s) 92
HpyAV CCTTC 1 cut(s) 626
HpyCH4III ACNGT 1 cut(s) 399
HpyCH4V TGCA 6 cut(s) 7, 299, 326, 380, 481, 683
HpyF3I CTNAG 1 cut(s) 764
Hsp92II CATG 2 cut(s) 356, 566
Kzo9I GATC 2 cut(s) 523, 715
LpnPI CCDG 8 cut(s) 2, 114, 265, 309, 630, 657, 669, 750
MaeI CTAG 3 cut(s) 59, 98, 488
MaeIII GTNAC 2 cut(s) 415, 590
MalI GATC 2 cut(s) 525, 717
MboI GATC 2 cut(s) 523, 715
MboII GAAGA 4 cut(s) 341, 383, 685, 771
MluCI AATT 6 cut(s) 31, 291, 457, 516, 678, 740
MlyI GAGTC 2 cut(s) 224, 412
MmeI TCCRAC 1 cut(s) 474
MnlI CCTC 5 cut(s) 105, 145, 404, 590, 665
MseI TTAA 3 cut(s) 54, 141, 308
MslI CAYNNNNRTG 2 cut(s) 444, 561
MspCI CTTAAG 1 cut(s) 53
MspR9I CCNGG 1 cut(s) 645
MvaI CCWGG 1 cut(s) 645
NdeI CATATG 1 cut(s) 472
NdeII GATC 2 cut(s) 523, 715
NheI GCTAGC 1 cut(s) 58
NlaIII CATG 2 cut(s) 356, 566
NmuCI GTSAC 1 cut(s) 415
OliI CACNNNNGTG 1 cut(s) 444
PaeR7I CTCGAG 1 cut(s) 627
PfeI GAWTC 3 cut(s) 49, 356, 545
PleI GAGTC 2 cut(s) 224, 412
PpsI GAGTC 2 cut(s) 224, 412
PshBI ATTAAT 1 cut(s) 308
Psp6I CCWGG 1 cut(s) 643
PspGI CCWGG 1 cut(s) 643
PstNI CAGNNNCTG 1 cut(s) 365
RsaI GTAC 1 cut(s) 625
RsaNI GTAC 1 cut(s) 624
RseI CAYNNNNRTG 2 cut(s) 444, 561
SaqAI TTAA 3 cut(s) 54, 141, 308
Sau3AI GATC 2 cut(s) 523, 715
SchI GAGTC 2 cut(s) 224, 412
ScrFI CCNGG 1 cut(s) 645
Sfr274I CTCGAG 1 cut(s) 627
SlaI CTCGAG 1 cut(s) 627
SmiMI CAYNNNNRTG 2 cut(s) 444, 561
SmlI CTYRAG 4 cut(s) 53, 420, 574, 627
SmoI CTYRAG 4 cut(s) 53, 420, 574, 627
Sse9I AATT 6 cut(s) 31, 291, 457, 516, 678, 740
SspMI CTAG 3 cut(s) 59, 98, 488
StyD4I CCNGG 1 cut(s) 643
StyI CCWWGG 1 cut(s) 279
TaaI ACNGT 1 cut(s) 399
TaqI TCGA 3 cut(s) 531, 628, 714
TaqII GACCGA 1 cut(s) 549
TasI AATT 6 cut(s) 31, 291, 457, 516, 678, 740
TfiI GAWTC 3 cut(s) 49, 356, 545
Tru1I TTAA 3 cut(s) 54, 141, 308
Tru9I TTAA 3 cut(s) 54, 141, 308
TseFI GTSAC 1 cut(s) 415
Tsp45I GTSAC 1 cut(s) 415
TspDTI ATGAA 5 cut(s) 17, 384, 545, 551, 558
TspGWI ACGGA 1 cut(s) 316
Vha464I CTTAAG 1 cut(s) 53
VspI ATTAAT 1 cut(s) 308
XapI RAATTY 1 cut(s) 291
XhoI CTCGAG 1 cut(s) 627
XspI CTAG 3 cut(s) 59, 98, 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.