Rh2BG457500

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Reverse (-)
64758538 .. 64765964
7427 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG457500.1

Sequence Viewer

Length: 426 bp
ATGAAGGGCATTGATAAGACAACTCTGGCGAAGAAAGTTTATCACCGTGGTACCATTGCAAGCCATTTTCAACTCTGGCGATGGGTATCTATACCTCACATGCATAATGAAAATGCACTATTGAGAAGTGTTGGAAGCCAGATTGTGAAGAGCGAAGAGGAATGGAGTGCAAAAGATTTCTGGATCAAGAATGATTTGCAAGAAGGTCACTTCAAACTCTTCCCTGGTAAGTTTGAAATCCCTGCAAGGAGATTAGTGGATTCATGGATTGCAAAAGGGTTGGTGGCAGAAGATTTTGCATTCGATCATCTCTTAGATTTGATCAACCATAGTATGATTCAAGTAGTTGAAAGGAAGCCTAATGGGGATGTCAAGACATGTCGATCGCTTGCCTTCTACGCTTTGGGAACCATGGTTGCAAGATAA

Protein Analysis

141

Amino Acids

16.26

Weight (kDa)

9.3

Isoelectric Point (pI)

39.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 1 - 59 4.3e-07 NB-ARC domain
WHD_DRP PF23559 73 - 128 7.2e-07 Disease resistance protein Winged helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000657)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g34770
malus_domestica MD17G1025700.v1.1
prunus_persica Prupe.3G040600_v2.0.a1 Prupe.3G040800_v2.0.a1 Prupe.3G041000_v2.0.a1 Prupe.3G041100_v2.0.a1 Prupe.3G041500_v2.0.a1 Prupe.4G109400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037700_v2.0.a1
pyrus_communis pycom09g10040 pycom17g16000
rosa_chinensis RchiOBHm_Chr2g0145591 RchiOBHm_Chr2g0145611
rosa_laevigata RLG00000020146 RLG00000020149 RLG00000020151 RLG00000020154
rosa_multiflora Rmu_co7986250.1_g000001 Rmu_co8305779.1_g000001 Rmu_sc0002718.1_g000011 Rmu_sc0002835.1_g000009 Rmu_sc0002835.1_g000016 Rmu_sc0003046.1_g000007 Rmu_sc0003046.1_g000010 Rmu_sc0004445.1_g000006 Rmu_sc0004810.1_g000002 Rmu_sc0006477.1_g000008 Rmu_sc0014329.1_g000001 Rmu_sc0020976.1_g000003 Rmu_sc0021168.1_g000001 Rmu_sc0022199.1_g000001 Rmu_sc0036991.1_g000001 Rmu_sc0041497.1_g000003
rosa_roxburghii Rroxscaffold_152G00434560 Rroxscaffold_152G00434570 Rroxscaffold_152G00434600 Rroxscaffold_152G00434610 Rroxscaffold_2G00100630 Rroxscaffold_2G00100640 Rroxscaffold_2G00100660 Rroxscaffold_2G00100670 Rroxscaffold_2G00100680 Rroxscaffold_2G00100690
rosa_rugosa Rorug02G0392300 Rorug02G0392400 Rorug02G0392400
rosa_samantha Rh2AG445700 Rh2AG445800 Rh2AG446000 Rh2AG446100 Rh2AG446300 Rh2AG446600 Rh2BG457400 Rh2BG457500 Rh2BG457600 Rh2BG457900 Rh2BG458300 Rh2CG432300 Rh2CG432400 Rh2CG432500 Rh2CG432700 Rh2CG432900 Rh2CG433000 Rh2CG433300 Rh2DG467100 Rh2DG467200 Rh2DG467300 Rh2DG467600 Rh2DG467900 Rh3DG194100
rosa_wichuraiana Rw2G036420 Rw2G036450 Rw2G036470 Rw3G014900 Rw3G014920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 50
AccB1I GGYRCC 1 cut(s) 50
AclWI GGATC 1 cut(s) 191
AfaI GTAC 1 cut(s) 52
AflIII ACRYGT 1 cut(s) 377
AgsI TTSAA 5 cut(s) 71, 214, 236, 341, 350
AjnI CCWGG 1 cut(s) 223
AlwI GGATC 1 cut(s) 191
Asp718I GGTACC 1 cut(s) 50
AsuHPI GGTGA 1 cut(s) 35
BaeI ACNNNNGTAYC 2 cut(s) 34, 67
BanI GGYRCC 1 cut(s) 50
BccI CCATC 1 cut(s) 75
BciT130I CCWGG 1 cut(s) 225
BclI TGATCA 1 cut(s) 321
Bme1390I CCNGG 1 cut(s) 225
BmiI GGNNCC 2 cut(s) 52, 409
BmrFI CCNGG 1 cut(s) 225
BsaBI GATNNNNATC 1 cut(s) 85
BsaJI CCNNGG 3 cut(s) 46, 223, 411
Bse3DI GCAATG 1 cut(s) 54
Bse8I GATNNNNATC 1 cut(s) 85
BseBI CCWGG 1 cut(s) 225
BseDI CCNNGG 3 cut(s) 46, 223, 411
BseGI GGATG 1 cut(s) 373
BseJI GATNNNNATC 1 cut(s) 85
BseMI GCAATG 1 cut(s) 54
Bsh1285I CGRYCG 1 cut(s) 386
BshNI GGYRCC 1 cut(s) 50
BsiEI CGRYCG 1 cut(s) 386
BsmI GAATGC 1 cut(s) 299
Bsp143I GATC 4 cut(s) 183, 304, 321, 383
Bsp19I CCATGG 1 cut(s) 411
BspLI GGNNCC 2 cut(s) 52, 409
BspPI GGATC 1 cut(s) 191
BspQI GCTCTTC 1 cut(s) 143
BspT107I GGYRCC 1 cut(s) 50
BsrDI GCAATG 1 cut(s) 54
BssECI CCNNGG 3 cut(s) 46, 223, 411
BssMI GATC 4 cut(s) 183, 304, 321, 383
BssT1I CCWWGG 1 cut(s) 411
Bst2UI CCWGG 1 cut(s) 225
Bst4CI ACNGT 1 cut(s) 47
Bst6I CTCTTC 3 cut(s) 143, 150, 224
BstC8I GCNNGC 2 cut(s) 61, 390
BstDEI CTNAG 1 cut(s) 313
BstDSI CCRYGG 2 cut(s) 46, 411
BstF5I GGATG 1 cut(s) 373
BstKTI GATC 4 cut(s) 186, 307, 324, 386
BstMBI GATC 4 cut(s) 183, 304, 321, 383
BstMCI CGRYCG 1 cut(s) 386
BstMWI GCNNNNNNNGC 1 cut(s) 398
BstNI CCWGG 1 cut(s) 225
BstNSI RCATGY 2 cut(s) 103, 381
BstSCI CCNGG 1 cut(s) 223
BtgI CCRYGG 2 cut(s) 46, 411
BtgZI GCGATG 1 cut(s) 94
BtsCI GGATG 1 cut(s) 373
Cac8I GCNNGC 2 cut(s) 61, 390
Csp6I GTAC 1 cut(s) 51
CviAII CATG 4 cut(s) 100, 264, 378, 412
CviJI RGCY 3 cut(s) 63, 138, 358
CviKI_1 RGCY 3 cut(s) 63, 138, 358
CviQI GTAC 1 cut(s) 51
DdeI CTNAG 1 cut(s) 313
DpnI GATC 4 cut(s) 185, 306, 323, 385
DpnII GATC 4 cut(s) 183, 304, 321, 383
Eam1104I CTCTTC 3 cut(s) 143, 150, 224
EarI CTCTTC 3 cut(s) 143, 150, 224
Eco130I CCWWGG 1 cut(s) 411
EcoRII CCWGG 1 cut(s) 223
EcoT14I CCWWGG 1 cut(s) 411
EcoT22I ATGCAT 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 411
FaeI CATG 4 cut(s) 103, 267, 381, 415
FaiI YATR 8 cut(s) 92, 101, 105, 265, 330, 335, 379, 413
FatI CATG 4 cut(s) 99, 263, 377, 411
FbaI TGATCA 1 cut(s) 321
FokI GGATG 1 cut(s) 380
Hin1II CATG 4 cut(s) 103, 267, 381, 415
HinfI GANTC 2 cut(s) 260, 337
HphI GGTGA 1 cut(s) 35
Hpy188III TCNNGA 3 cut(s) 181, 187, 373
HpyAV CCTTC 2 cut(s) 197, 403
HpyCH4III ACNGT 1 cut(s) 47
HpyCH4V TGCA 9 cut(s) 59, 103, 116, 170, 199, 245, 272, 299, 419
HpyF10VI GCNNNNNNNGC 1 cut(s) 398
HpyF3I CTNAG 1 cut(s) 313
Hsp92II CATG 4 cut(s) 103, 267, 381, 415
KpnI GGTACC 1 cut(s) 54
Ksp22I TGATCA 1 cut(s) 321
Kzo9I GATC 4 cut(s) 183, 304, 321, 383
LguI GCTCTTC 1 cut(s) 143
LpnPI CCDG 7 cut(s) 11, 61, 152, 166, 210, 237, 255
MaeIII GTNAC 1 cut(s) 206
MalI GATC 4 cut(s) 185, 306, 323, 385
MboI GATC 4 cut(s) 183, 304, 321, 383
MboII GAAGA 5 cut(s) 43, 160, 167, 211, 302
MmeI TCCRAC 1 cut(s) 112
MnlI CCTC 2 cut(s) 105, 151
Mph1103I ATGCAT 1 cut(s) 105
MspR9I CCNGG 1 cut(s) 225
Mva1269I GAATGC 1 cut(s) 299
MvaI CCWGG 1 cut(s) 225
MwoI GCNNNNNNNGC 1 cut(s) 398
NcoI CCATGG 1 cut(s) 411
NdeII GATC 4 cut(s) 183, 304, 321, 383
NlaIII CATG 4 cut(s) 103, 267, 381, 415
NlaIV GGNNCC 2 cut(s) 52, 409
NmuCI GTSAC 1 cut(s) 206
NsiI ATGCAT 1 cut(s) 105
NspI RCATGY 2 cut(s) 103, 381
PciI ACATGT 1 cut(s) 377
PciSI GCTCTTC 1 cut(s) 143
PctI GAATGC 1 cut(s) 299
PfeI GAWTC 2 cut(s) 260, 337
Ple19I CGATCG 1 cut(s) 386
PscI ACATGT 1 cut(s) 377
Psp6I CCWGG 1 cut(s) 223
PspGI CCWGG 1 cut(s) 223
PspN4I GGNNCC 2 cut(s) 52, 409
PvuI CGATCG 1 cut(s) 386
RsaI GTAC 1 cut(s) 52
RsaNI GTAC 1 cut(s) 51
SapI GCTCTTC 1 cut(s) 143
Sau3AI GATC 4 cut(s) 183, 304, 321, 383
ScrFI CCNGG 1 cut(s) 225
SetI ASST 2 cut(s) 97, 208
StyD4I CCNGG 1 cut(s) 223
StyI CCWWGG 1 cut(s) 411
TaaI ACNGT 1 cut(s) 47
TaqI TCGA 2 cut(s) 303, 382
TfiI GAWTC 2 cut(s) 260, 337
TseFI GTSAC 1 cut(s) 206
Tsp45I GTSAC 1 cut(s) 206
TspDTI ATGAA 3 cut(s) 17, 123, 252
XceI RCATGY 2 cut(s) 103, 381
Zsp2I ATGCAT 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.