Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000657

Physical Location & Seq

Genomic Coordinates Forward (+)

22477630 .. 22478954

Gene Structure 1325 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00100690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGGTGCACGTTTCTTCTGATCAAGAAGAAACCAATGCAAAGAAACTTGTAGCAAGAACCGGAGGCTTACCACTTGTGATCTTACGTCTTTGGTATCTACTGTCAAGGAAGAAAGTGACAGCTGAGGAACTGTCAAGGTTGCTTGATCAACCAAACACCATGGTTAGATACTCTGCACTAAATAAAAAGGATTTGCAAGAAGGTCACTTTGAACTCTTCCCTGGTGAGTTTGAAATCCCTGCAAGGAGATTAGTGGCTTCAGGGATTGCAAAAGGGTTGGTGGCAGAAGATTTTGCATTCGATCATCTCTTAGATTTGGTCAACCGCAGTATGATTCAAGTAGTTGAAAGGAAGCCTAATGGGGATGTCAAGACATGTCGCTTGCCTTCTGTGCTTCGGGAACTCTGGTTGCAAGACAAAGGCAATAGCAGCAAAACATGCTCATGGTCCCAAAGTACAAGTCCAAACCAGCATCTTATTGCCTATCACTTTGATGATAATGATGCCAGTTTCAGTAGGATCAATGGTCTCAACATGAATACGCCAAATGTTTTGCAGAATGGCAAGTATCCCCAATCCATTCTTTTCTTTGATACTCGAGAAGGAAATAAATCAGGAGAGGAAATAGGCTACTTTCTTCGCAAGGGCATTGCTGTTAGTTTCTTTCAGCAGCTGCTGGTTCTTGACCTGGAGCATGTATTCAGACCTCAATTACCGACTACCATAGGTAAATTAAAGAAGCTGAAATATCTAGGCTTAAGGTGGACATACTTAGAGGAAATGCCAGCATCTATAGGCAATTTGGTGGAACTCCAAACTCTAGAATTGAAGCATACTCGTATTACAACTATCTCAACTTCAATTTGGAAACTGAAGAACCTTCGGCACCTGTACTCGAATGAGAATTGTCGAATCAAATTTAGGTCTCTAACAACTGCCATTTCCATGAGGGAACTGAAGACACTATCAGGTGTATTTCTAGATAAGGGGAATCTTGTGAAGGATCGACTCAACAAGTTGACCAACCTTCAAAAGTTGGGATTGACATTCCAGCTGACGCAGCCAGAGAAAAAGGTCATAGCAAGATGGATTGTGCAGCTGAATGACTTGGAGTCTTTGAAGTTGGCGTCTATTAATGAGAAGAGTGCACCTCAACTTCTGAGATTGAAACCTCTTTTACGCCTCAAAAAACTGTCCACCCTATACTTGTCTGGAAAGCTTGAAACCCATCCATTGAACTCCCTAAAAGTCTTATTCATTTTACCTTATCAGCCTCTGGAATTGTTAATGATTCAATGCCAAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009506 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0030054 GO:0033554 GO:0034050 GO:0036094 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0071944 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

435

Amino Acids

49.79

Weight (kDa)

9.67

Isoelectric Point (pI)

37.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	218 - 400	1.2e-23	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000657)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g34770
malus_domestica	MD17G1025700.v1.1
prunus_persica	Prupe.3G040600_v2.0.a1 Prupe.3G040800_v2.0.a1 Prupe.3G041000_v2.0.a1 Prupe.3G041100_v2.0.a1 Prupe.3G041500_v2.0.a1 Prupe.4G109400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037700_v2.0.a1
pyrus_communis	pycom09g10040 pycom17g16000
rosa_chinensis	RchiOBHm_Chr2g0145591 RchiOBHm_Chr2g0145611
rosa_laevigata	RLG00000020146 RLG00000020149 RLG00000020151 RLG00000020154
rosa_multiflora	Rmu_co7986250.1_g000001 Rmu_co8305779.1_g000001 Rmu_sc0002718.1_g000011 Rmu_sc0002835.1_g000009 Rmu_sc0002835.1_g000016 Rmu_sc0003046.1_g000007 Rmu_sc0003046.1_g000010 Rmu_sc0004445.1_g000006 Rmu_sc0004810.1_g000002 Rmu_sc0006477.1_g000008 Rmu_sc0014329.1_g000001 Rmu_sc0020976.1_g000003 Rmu_sc0021168.1_g000001 Rmu_sc0022199.1_g000001 Rmu_sc0036991.1_g000001 Rmu_sc0041497.1_g000003
rosa_roxburghii	Rroxscaffold_152G00434560 Rroxscaffold_152G00434570 Rroxscaffold_152G00434600 Rroxscaffold_152G00434610 Rroxscaffold_2G00100630 Rroxscaffold_2G00100640 Rroxscaffold_2G00100660 Rroxscaffold_2G00100670 Rroxscaffold_2G00100680 Rroxscaffold_2G00100690
rosa_rugosa	Rorug02G0392300 Rorug02G0392400 Rorug02G0392400
rosa_samantha	Rh2AG445700 Rh2AG445800 Rh2AG446000 Rh2AG446100 Rh2AG446300 Rh2AG446600 Rh2BG457400 Rh2BG457500 Rh2BG457600 Rh2BG457900 Rh2BG458300 Rh2CG432300 Rh2CG432400 Rh2CG432500 Rh2CG432700 Rh2CG432900 Rh2CG433000 Rh2CG433300 Rh2DG467100 Rh2DG467200 Rh2DG467300 Rh2DG467600 Rh2DG467900 Rh3DG194100
rosa_wichuraiana	Rw2G036420 Rw2G036450 Rw2G036470 Rw3G014900 Rw3G014920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	885
AciI	CCGC	1 cut(s)	325
AclWI	GGATC	2 cut(s)	527, 1011
AcsI	RAATTY	1 cut(s)	917
AcuI	CTGAAG	3 cut(s)	243, 893, 977
AcyI	GRCGYC	1 cut(s)	1127
AfaI	GTAC	2 cut(s)	457, 893
AflII	CTTAAG	1 cut(s)	757
AflIII	ACRYGT	1 cut(s)	374
AhdI	GACNNNNNGTC	1 cut(s)	1111
AjnI	CCWGG	2 cut(s)	220, 687
AluBI	AGCT	6 cut(s)	122, 673, 742, 1054, 1099, 1219
AluI	AGCT	6 cut(s)	122, 673, 742, 1054, 1099, 1219
Alw21I	GWGCWC	2 cut(s)	9, 1150
Alw26I	GTCTC	2 cut(s)	533, 930
Alw44I	GTGCAC	2 cut(s)	5, 1146
AlwI	GGATC	2 cut(s)	527, 1011
AlwNI	CAGNNNCTG	3 cut(s)	673, 676, 1276
Ama87I	CYCGRG	1 cut(s)	597
ApaLI	GTGCAC	2 cut(s)	5, 1146
ApeKI	GCWGC	5 cut(s)	429, 670, 673, 1060, 1096
ApoI	RAATTY	1 cut(s)	917
ArsI	GACNNNNNNTTYG	2 cut(s)	445, 477
AseI	ATTAAT	1 cut(s)	1134
AspS9I	GGNCC	1 cut(s)	447
AsuHPI	GGTGA	1 cut(s)	236
AvaI	CYCGRG	1 cut(s)	597
AvaII	GGWCC	1 cut(s)	447
BaeGI	GKGCMC	2 cut(s)	9, 1150
BanI	GGYRCC	1 cut(s)	885
BbsI	GAAGAC	1 cut(s)	965
Bbv12I	GWGCWC	2 cut(s)	9, 1150
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	5 cut(s)	441, 660, 682, 1072, 1108
BccI	CCATC	2 cut(s)	1080, 1236
BciT130I	CCWGG	2 cut(s)	222, 689
BciVI	GTATCC	1 cut(s)	579
BclI	TGATCA	2 cut(s)	19, 145
BcoDI	GTCTC	2 cut(s)	533, 930
BfaI	CTAG	3 cut(s)	752, 821, 980
BfmI	CTRYAG	1 cut(s)	792
BfrI	CTTAAG	1 cut(s)	757
BfuI	GTATCC	1 cut(s)	579
BisI	GCNGC	5 cut(s)	430, 671, 674, 1061, 1097
BlsI	GCNGC	5 cut(s)	431, 672, 675, 1062, 1098
Bme1390I	CCNGG	2 cut(s)	222, 689
Bme18I	GGWCC	1 cut(s)	447
BmeRI	GACNNNNNGTC	1 cut(s)	1111
BmeT110I	CYCGRG	1 cut(s)	597
BmgT120I	GGNCC	1 cut(s)	447
BmiI	GGNNCC	2 cut(s)	449, 887
BmrFI	CCNGG	2 cut(s)	222, 689
BmsI	GCATC	3 cut(s)	481, 493, 797
BpiI	GAAGAC	1 cut(s)	965
BplI	GAGNNNNNCTC	2 cut(s)	1135, 1167
BpmI	CTGGAG	1 cut(s)	710
Bpu10I	CCTNAGC	1 cut(s)	123
BsaHI	GRCGYC	1 cut(s)	1127
BsaI	GGTCTC	2 cut(s)	533, 930
BsaJI	CCNNGG	2 cut(s)	159, 220
BsaWI	WCCGGW	1 cut(s)	59
Bse1I	ACTGG	1 cut(s)	507
Bse3DI	GCAATG	1 cut(s)	648
BseBI	CCWGG	2 cut(s)	222, 689
BseDI	CCNNGG	2 cut(s)	159, 220
BseGI	GGATG	2 cut(s)	370, 1228
BseMI	GCAATG	1 cut(s)	648
BseMII	CTCAG	2 cut(s)	114, 1151
BseNI	ACTGG	1 cut(s)	507
BseSI	GKGCMC	2 cut(s)	9, 1150
BseXI	GCAGC	5 cut(s)	441, 660, 682, 1072, 1108
BsgI	GTGCAG	2 cut(s)	159, 1115
BshNI	GGYRCC	1 cut(s)	885
BsiHKAI	GWGCWC	2 cut(s)	9, 1150
BsiHKCI	CYCGRG	1 cut(s)	597
BsiSI	CCGG	1 cut(s)	60
BslFI	GGGAC	1 cut(s)	433
BsmAI	GTCTC	2 cut(s)	533, 930
BsmFI	GGGAC	1 cut(s)	433
BsmI	GAATGC	1 cut(s)	296
Bso31I	GGTCTC	2 cut(s)	533, 930
BsoBI	CYCGRG	1 cut(s)	597
Bsp1286I	GDGCHC	2 cut(s)	9, 1150
Bsp143I	GATC	6 cut(s)	19, 78, 145, 301, 519, 1003
Bsp19I	CCATGG	1 cut(s)	159
BspACI	CCGC	1 cut(s)	325
BspCNI	CTCAG	2 cut(s)	115, 1152
BspLI	GGNNCC	2 cut(s)	449, 887
BspPI	GGATC	2 cut(s)	527, 1011
BspT107I	GGYRCC	1 cut(s)	885
BspTI	CTTAAG	1 cut(s)	757
BspTNI	GGTCTC	2 cut(s)	533, 930
BsrDI	GCAATG	1 cut(s)	648
BsrI	ACTGG	1 cut(s)	507
BssECI	CCNNGG	2 cut(s)	159, 220
BssMI	GATC	6 cut(s)	19, 78, 145, 301, 519, 1003
BssNI	GRCGYC	1 cut(s)	1127
BssT1I	CCWWGG	1 cut(s)	159
Bst2UI	CCWGG	2 cut(s)	222, 689
Bst4CI	ACNGT	3 cut(s)	102, 132, 1194
Bst6I	CTCTTC	2 cut(s)	221, 1136
BstACI	GRCGYC	1 cut(s)	1127
BstAFI	CTTAAG	1 cut(s)	757
BstAPI	GCANNNNNTGC	1 cut(s)	438
BstC8I	GCNNGC	2 cut(s)	383, 786
BstDEI	CTNAG	4 cut(s)	123, 310, 772, 1160
BstDSI	CCRYGG	1 cut(s)	159
BstF5I	GGATG	2 cut(s)	370, 1228
BstKTI	GATC	6 cut(s)	22, 81, 148, 304, 522, 1006
BstMAI	GTCTC	2 cut(s)	533, 930
BstMBI	GATC	6 cut(s)	19, 78, 145, 301, 519, 1003
BstMWI	GCNNNNNNNGC	4 cut(s)	391, 429, 438, 1060
BstNI	CCWGG	2 cut(s)	222, 689
BstNSI	RCATGY	3 cut(s)	378, 441, 698
BstSCI	CCNGG	2 cut(s)	220, 687
BstSFI	CTRYAG	1 cut(s)	792
BstSLI	GKGCMC	2 cut(s)	9, 1150
BstV1I	GCAGC	5 cut(s)	441, 660, 682, 1072, 1108
BstV2I	GAAGAC	1 cut(s)	965
BsuI	GTATCC	1 cut(s)	579
BtgI	CCRYGG	1 cut(s)	159
BtsCI	GGATG	2 cut(s)	370, 1228
Cac8I	GCNNGC	2 cut(s)	383, 786
CaiI	CAGNNNCTG	3 cut(s)	673, 676, 1276
Cfr13I	GGNCC	1 cut(s)	447
CseI	GACGC	2 cut(s)	1066, 1116
Csp6I	GTAC	2 cut(s)	456, 892
CviAII	CATG	7 cut(s)	160, 375, 438, 444, 535, 695, 946
CviQI	GTAC	2 cut(s)	456, 892
DdeI	CTNAG	4 cut(s)	123, 310, 772, 1160
DpnI	GATC	6 cut(s)	21, 80, 147, 303, 521, 1005
DpnII	GATC	6 cut(s)	19, 78, 145, 301, 519, 1003
DriI	GACNNNNNGTC	1 cut(s)	1111
Eam1104I	CTCTTC	2 cut(s)	221, 1136
Eam1105I	GACNNNNNGTC	1 cut(s)	1111
EarI	CTCTTC	2 cut(s)	221, 1136
Eco130I	CCWWGG	1 cut(s)	159
Eco31I	GGTCTC	2 cut(s)	533, 930
Eco47I	GGWCC	1 cut(s)	447
Eco57I	CTGAAG	3 cut(s)	243, 893, 977
Eco88I	CYCGRG	1 cut(s)	597
EcoRII	CCWGG	2 cut(s)	220, 687
EcoT14I	CCWWGG	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	159
FaeI	CATG	7 cut(s)	163, 378, 441, 447, 538, 698, 949
FaqI	GGGAC	1 cut(s)	433
FatI	CATG	7 cut(s)	159, 374, 437, 443, 534, 694, 945
FbaI	TGATCA	2 cut(s)	19, 145
Fnu4HI	GCNGC	5 cut(s)	430, 671, 674, 1061, 1097
FokI	GGATG	2 cut(s)	377, 1215
Fsp4HI	GCNGC	5 cut(s)	430, 671, 674, 1061, 1097
FspBI	CTAG	3 cut(s)	752, 821, 980
GluI	GCNGC	5 cut(s)	430, 671, 674, 1061, 1097
GsuI	CTGGAG	1 cut(s)	710
HapII	CCGG	1 cut(s)	60
HgaI	GACGC	2 cut(s)	1066, 1116
Hin1I	GRCGYC	1 cut(s)	1127
Hin1II	CATG	7 cut(s)	163, 378, 441, 447, 538, 698, 949
HincII	GTYRAC	2 cut(s)	322, 1020
HindII	GTYRAC	2 cut(s)	322, 1020
HindIII	AAGCTT	1 cut(s)	1217
HinfI	GANTC	6 cut(s)	334, 912, 991, 1008, 1112, 1291
HpaII	CCGG	1 cut(s)	60
HphI	GGTGA	1 cut(s)	236
Hpy166II	GTNNAC	6 cut(s)	7, 322, 765, 1020, 1148, 1197
Hpy188I	TCNGA	3 cut(s)	19, 704, 1161
Hpy8I	GTNNAC	6 cut(s)	7, 322, 765, 1020, 1148, 1197
HpyAV	CCTTC	6 cut(s)	194, 396, 596, 890, 994, 1037
HpyCH4III	ACNGT	3 cut(s)	102, 132, 1194
HpyCH4IV	ACGT	2 cut(s)	9, 85
HpyF10VI	GCNNNNNNNGC	4 cut(s)	391, 429, 438, 1060
HpyF3I	CTNAG	4 cut(s)	123, 310, 772, 1160
HpySE526I	ACGT	2 cut(s)	9, 85
Hsp92I	GRCGYC	1 cut(s)	1127
Hsp92II	CATG	7 cut(s)	163, 378, 441, 447, 538, 698, 949
Ksp22I	TGATCA	2 cut(s)	19, 145
Kzo9I	GATC	6 cut(s)	19, 78, 145, 301, 519, 1003
LmnI	GCTCC	1 cut(s)	691
Lsp1109I	GCAGC	5 cut(s)	441, 660, 682, 1072, 1108
LweI	GCATC	3 cut(s)	481, 493, 797
MaeI	CTAG	3 cut(s)	752, 821, 980
MaeII	ACGT	2 cut(s)	9, 85
MaeIII	GTNAC	2 cut(s)	115, 203
MalI	GATC	6 cut(s)	21, 80, 147, 303, 521, 1005
MboI	GATC	6 cut(s)	19, 78, 145, 301, 519, 1003
MboII	GAAGA	9 cut(s)	6, 38, 121, 208, 299, 629, 886, 970, 1153
MhlI	GDGCHC	2 cut(s)	9, 1150
MluCI	AATT	8 cut(s)	710, 731, 799, 824, 861, 904, 917, 1280
MlyI	GAGTC	2 cut(s)	1002, 1121
MseI	TTAA	4 cut(s)	734, 758, 1134, 1286
MslI	CAYNNNNRTG	3 cut(s)	442, 492, 944
MspA1I	CMGCKG	4 cut(s)	122, 673, 1054, 1099
MspCI	CTTAAG	1 cut(s)	757
MspI	CCGG	1 cut(s)	60
MspR9I	CCNGG	2 cut(s)	222, 689
Mva1269I	GAATGC	1 cut(s)	296
MvaI	CCWGG	2 cut(s)	222, 689
MwoI	GCNNNNNNNGC	4 cut(s)	391, 429, 438, 1060
NcoI	CCATGG	1 cut(s)	159
NdeII	GATC	6 cut(s)	19, 78, 145, 301, 519, 1003
NlaIII	CATG	7 cut(s)	163, 378, 441, 447, 538, 698, 949
NlaIV	GGNNCC	2 cut(s)	449, 887
NmuCI	GTSAC	2 cut(s)	115, 203
NspI	RCATGY	3 cut(s)	378, 441, 698
PaeR7I	CTCGAG	1 cut(s)	597
PciI	ACATGT	1 cut(s)	374
PctI	GAATGC	1 cut(s)	296
PfeI	GAWTC	4 cut(s)	334, 912, 991, 1291
PkrI	GCNGC	5 cut(s)	431, 672, 675, 1062, 1098
PleI	GAGTC	2 cut(s)	1002, 1120
PpsI	GAGTC	2 cut(s)	1002, 1120
PscI	ACATGT	1 cut(s)	374
PshBI	ATTAAT	1 cut(s)	1134
Psp6I	CCWGG	2 cut(s)	220, 687
PspGI	CCWGG	2 cut(s)	220, 687
PspN4I	GGNNCC	2 cut(s)	449, 887
PspPI	GGNCC	1 cut(s)	447
PstNI	CAGNNNCTG	3 cut(s)	673, 676, 1276
PvuII	CAGCTG	4 cut(s)	122, 673, 1054, 1099
RsaI	GTAC	2 cut(s)	457, 893
RsaNI	GTAC	2 cut(s)	456, 892
RseI	CAYNNNNRTG	3 cut(s)	442, 492, 944
SaqAI	TTAA	4 cut(s)	734, 758, 1134, 1286
SatI	GCNGC	5 cut(s)	430, 671, 674, 1061, 1097
Sau3AI	GATC	6 cut(s)	19, 78, 145, 301, 519, 1003
Sau96I	GGNCC	1 cut(s)	447
SchI	GAGTC	2 cut(s)	1002, 1121
ScrFI	CCNGG	2 cut(s)	222, 689
SduI	GDGCHC	2 cut(s)	9, 1150
SfaNI	GCATC	3 cut(s)	481, 493, 797
SfcI	CTRYAG	1 cut(s)	792
Sfr274I	CTCGAG	1 cut(s)	597
SinI	GGWCC	1 cut(s)	447
SlaI	CTCGAG	1 cut(s)	597
SmiMI	CAYNNNNRTG	3 cut(s)	442, 492, 944
SmlI	CTYRAG	2 cut(s)	597, 757
SmoI	CTYRAG	2 cut(s)	597, 757
Sse9I	AATT	8 cut(s)	710, 731, 799, 824, 861, 904, 917, 1280
SsiI	CCGC	1 cut(s)	325
SspMI	CTAG	3 cut(s)	752, 821, 980
StyD4I	CCNGG	2 cut(s)	220, 687
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	3 cut(s)	102, 132, 1194
TaiI	ACGT	2 cut(s)	12, 88
TaqI	TCGA	5 cut(s)	300, 598, 896, 910, 1006
TasI	AATT	8 cut(s)	710, 731, 799, 824, 861, 904, 917, 1280
TatI	WGTACW	2 cut(s)	455, 891
TfiI	GAWTC	4 cut(s)	334, 912, 991, 1291
Tru1I	TTAA	4 cut(s)	734, 758, 1134, 1286
Tru9I	TTAA	4 cut(s)	734, 758, 1134, 1286
TseFI	GTSAC	2 cut(s)	115, 203
TseI	GCWGC	5 cut(s)	429, 670, 673, 1060, 1096
Tsp45I	GTSAC	2 cut(s)	115, 203
TspDTI	ATGAA	2 cut(s)	551, 1246
Vha464I	CTTAAG	1 cut(s)	757
VneI	GTGCAC	2 cut(s)	5, 1146
VpaK11BI	GGWCC	1 cut(s)	447
VspI	ATTAAT	1 cut(s)	1134
XapI	RAATTY	1 cut(s)	917
XbaI	TCTAGA	2 cut(s)	820, 979
XceI	RCATGY	3 cut(s)	378, 441, 698
XhoI	CTCGAG	1 cut(s)	597
XspI	CTAG	3 cut(s)	752, 821, 980

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.