Rmu_sc0021168.1_g000001

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021168.1
Physical Location & Seq
Forward (+)
643 .. 1863
1221 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021168.1_g000001.1.cds

Sequence Viewer

Length: 1221 bp
atggttgatgttttcctccagatgcgatgggccgttggtttcctcgagaagaagaaattatgcgccagcatctgtagatcactggagcacacgaggtccaaagttcgaagtctgcaggacagatgttatgttgatgaatccaaacatcaatctgtcaagtacaaagcatcacctgatggcttaagagctgacgttttgatttcccctcttagcaacttggatccgaatacagatggcgaaggcatcgtcataatgcatttacaacaagtgcatgctttcatggaggatctacaccagctcaaactgctaactgcaagggaagtgtcatgggcgaggaaagcaaacaagactcttgacaaaacaaaggatgccgttgccaccataatcaagagaagagaaaatcagagaaggtggttctcatctgtcactaactggggggaggaggagaaacttaaggcggacatagcgtacattcggagcagggtacctgacctcctggaaacgaaggaaagatatggtatcaaatttatcagacgaggcgcattaaaatctgatccccgatctcctcaacagcataacttgcagaatcatactccagatcctgatacggacttgtcctcctatgtgaccagcattcataattggctgaatcaattgccagctcgagcagcaaaaaagttggaacatgagatcagcttgctgagagatgagttgggccacatgcatagactgttgaaacataaaaatgcggctatatatgctagcaaggttagaaatgcttgcttggagcaattgaagaaaatggccgcggaagcaaagcagtattcagaaacccaaatggaattttcagagaactcaaagcatgtgtccgacatcaagagaatcattgttctccttcggagattcagtcaagcatattccattgaaaaggagcaaccatgctatgcagttggtttggaagaagacacacataaactggtcttacggctgacagaccctggtagagagatcatttccattggaggcatgaagggcattggtaagacaactctggcaaacaaagtctatcaccacggtaccattgcaagccattttaaactccgacgatgggtatctctacctcatcaagggcacgaggaaatagttttaagaagacttgaaaagagtgaagagaaacagagtggaaaggatgggacaagaatgtgcatgatgatctcttga

Protein Analysis

406

Amino Acids

46.8

Weight (kDa)

9.55

Isoelectric Point (pI)

54.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000657)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g34770
malus_domestica MD17G1025700.v1.1
prunus_persica Prupe.3G040600_v2.0.a1 Prupe.3G040800_v2.0.a1 Prupe.3G041000_v2.0.a1 Prupe.3G041100_v2.0.a1 Prupe.3G041500_v2.0.a1 Prupe.4G109400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037400_v2.0.a1 Prupe.8G037700_v2.0.a1
pyrus_communis pycom09g10040 pycom17g16000
rosa_chinensis RchiOBHm_Chr2g0145591 RchiOBHm_Chr2g0145611
rosa_laevigata RLG00000020146 RLG00000020149 RLG00000020151 RLG00000020154
rosa_multiflora Rmu_co7986250.1_g000001 Rmu_co8305779.1_g000001 Rmu_sc0002718.1_g000011 Rmu_sc0002835.1_g000009 Rmu_sc0002835.1_g000016 Rmu_sc0003046.1_g000007 Rmu_sc0003046.1_g000010 Rmu_sc0004445.1_g000006 Rmu_sc0004810.1_g000002 Rmu_sc0006477.1_g000008 Rmu_sc0014329.1_g000001 Rmu_sc0020976.1_g000003 Rmu_sc0021168.1_g000001 Rmu_sc0022199.1_g000001 Rmu_sc0036991.1_g000001 Rmu_sc0041497.1_g000003
rosa_roxburghii Rroxscaffold_152G00434560 Rroxscaffold_152G00434570 Rroxscaffold_152G00434600 Rroxscaffold_152G00434610 Rroxscaffold_2G00100630 Rroxscaffold_2G00100640 Rroxscaffold_2G00100660 Rroxscaffold_2G00100670 Rroxscaffold_2G00100680 Rroxscaffold_2G00100690
rosa_rugosa Rorug02G0392300 Rorug02G0392400 Rorug02G0392400
rosa_samantha Rh2AG445700 Rh2AG445800 Rh2AG446000 Rh2AG446100 Rh2AG446300 Rh2AG446600 Rh2BG457400 Rh2BG457500 Rh2BG457600 Rh2BG457900 Rh2BG458300 Rh2CG432300 Rh2CG432400 Rh2CG432500 Rh2CG432700 Rh2CG432900 Rh2CG433000 Rh2CG433300 Rh2DG467100 Rh2DG467200 Rh2DG467300 Rh2DG467600 Rh2DG467900 Rh3DG194100
rosa_wichuraiana Rw2G036420 Rw2G036450 Rw2G036470 Rw3G014900 Rw3G014920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 484, 1076
AccB1I GGYRCC 2 cut(s) 484, 1076
AccII CGCG 1 cut(s) 809
AciI CCGC 4 cut(s) 458, 749, 807, 809
AclWI GGATC 5 cut(s) 215, 228, 294, 548, 593
AcoI YGGCCR 1 cut(s) 804
AcsI RAATTY 2 cut(s) 524, 842
AfaI GTAC 4 cut(s) 161, 470, 486, 1078
AfiI CCNNNNNNNGG 2 cut(s) 1108, 1127
AflII CTTAAG 2 cut(s) 181, 452
AgsI TTSAA 4 cut(s) 736, 796, 926, 1160
AjnI CCWGG 2 cut(s) 495, 997
AluBI AGCT 4 cut(s) 188, 298, 662, 696
AluI AGCT 4 cut(s) 188, 298, 662, 696
Alw21I GWGCWC 1 cut(s) 90
AlwI GGATC 5 cut(s) 215, 228, 294, 548, 593
AlwNI CAGNNNCTG 3 cut(s) 72, 602, 998
Ama87I CYCGRG 2 cut(s) 44, 663
AoxI GGCC 3 cut(s) 30, 715, 804
ApeKI GCWGC 1 cut(s) 668
ApoI RAATTY 2 cut(s) 524, 842
ArsI GACNNNNNNTTYG 4 cut(s) 231, 263, 851, 883
Asp718I GGTACC 2 cut(s) 484, 1076
AspLEI GCGC 2 cut(s) 65, 542
AspS9I GGNCC 3 cut(s) 30, 96, 715
AsuHPI GGTGA 2 cut(s) 162, 1061
AsuII TTCGAA 1 cut(s) 106
AsuNHI GCTAGC 1 cut(s) 761
AvaI CYCGRG 2 cut(s) 44, 663
AvaII GGWCC 1 cut(s) 96
BaeGI GKGCMC 1 cut(s) 1134
BaeI ACNNNNGTAYC 2 cut(s) 1060, 1093
BamHI GGATCC 1 cut(s) 220
BanI GGYRCC 2 cut(s) 484, 1076
BauI CACGAG 2 cut(s) 91, 1133
BbsI GAAGAC 2 cut(s) 969, 1159
Bbv12I GWGCWC 1 cut(s) 90
BbvI GCAGC 1 cut(s) 680
BccI CCATC 5 cut(s) 21, 170, 227, 1101, 1184
BceAI ACGGC 3 cut(s) 17, 356, 1001
BciT130I CCWGG 2 cut(s) 497, 999
BfaI CTAG 1 cut(s) 762
BfmI CTRYAG 2 cut(s) 73, 113
BfrI CTTAAG 2 cut(s) 181, 452
BisI GCNGC 3 cut(s) 669, 750, 807
BlsI GCNGC 3 cut(s) 670, 751, 808
Bme1390I CCNGG 2 cut(s) 497, 999
Bme18I GGWCC 1 cut(s) 96
BmeT110I CYCGRG 2 cut(s) 44, 663
BmgT120I GGNCC 3 cut(s) 30, 96, 715
BmiI GGNNCC 3 cut(s) 222, 486, 1078
BmrFI CCNGG 2 cut(s) 497, 999
BmrI ACTGGG 1 cut(s) 442
BmsI GCATC 5 cut(s) 12, 78, 176, 252, 358
BmtI GCTAGC 1 cut(s) 765
BmuI ACTGGG 1 cut(s) 442
BpiI GAAGAC 2 cut(s) 969, 1159
BpmI CTGGAG 2 cut(s) 104, 579
Bpu14I TTCGAA 1 cut(s) 106
BsaBI GATNNNNATC 1 cut(s) 1111
BsaJI CCNNGG 3 cut(s) 807, 997, 1072
BsaXI ACNNNNNCTCC 6 cut(s) 477, 507, 602, 632, 892, 922
Bsc4I CCNNNNNNNGG 2 cut(s) 1108, 1127
Bse1I ACTGG 3 cut(s) 87, 437, 981
Bse3DI GCAATG 1 cut(s) 1080
Bse8I GATNNNNATC 1 cut(s) 1111
BseBI CCWGG 2 cut(s) 497, 999
BseDI CCNNGG 3 cut(s) 807, 997, 1072
BseGI GGATG 2 cut(s) 373, 1195
BseJI GATNNNNATC 1 cut(s) 1111
BseLI CCNNNNNNNGG 2 cut(s) 1108, 1127
BseMI GCAATG 1 cut(s) 1080
BseMII CTCAG 1 cut(s) 692
BseNI ACTGG 3 cut(s) 87, 437, 981
BseRI GAGGAG 3 cut(s) 455, 458, 555
BseSI GKGCMC 1 cut(s) 1134
BseXI GCAGC 1 cut(s) 680
Bsh1236I CGCG 1 cut(s) 809
BshFI GGCC 3 cut(s) 32, 717, 806
BshNI GGYRCC 2 cut(s) 484, 1076
BsiHKAI GWGCWC 1 cut(s) 90
BsiHKCI CYCGRG 2 cut(s) 44, 663
BslFI GGGAC 1 cut(s) 1207
BslI CCNNNNNNNGG 2 cut(s) 1108, 1127
BsmFI GGGAC 1 cut(s) 1207
BsmI GAATGC 1 cut(s) 633
BsnI GGCC 3 cut(s) 32, 717, 806
BsoBI CYCGRG 2 cut(s) 44, 663
Bsp119I TTCGAA 1 cut(s) 106
Bsp1286I GDGCHC 2 cut(s) 90, 1134
Bsp143I GATC 9 cut(s) 77, 220, 286, 553, 560, 598, 690, 1008, 1212
BspACI CCGC 4 cut(s) 458, 749, 807, 809
BspANI GGCC 3 cut(s) 32, 717, 806
BspCNI CTCAG 1 cut(s) 693
BspFNI CGCG 1 cut(s) 809
BspLI GGNNCC 3 cut(s) 222, 486, 1078
BspMAI CTGCAG 1 cut(s) 117
BspOI GCTAGC 1 cut(s) 765
BspPI GGATC 5 cut(s) 215, 228, 294, 548, 593
BspT104I TTCGAA 1 cut(s) 106
BspT107I GGYRCC 2 cut(s) 484, 1076
BspTI CTTAAG 2 cut(s) 181, 452
BsrDI GCAATG 1 cut(s) 1080
BsrI ACTGG 3 cut(s) 87, 437, 981
BssECI CCNNGG 3 cut(s) 807, 997, 1072
BssMI GATC 9 cut(s) 77, 220, 286, 553, 560, 598, 690, 1008, 1212
BssSI CACGAG 2 cut(s) 91, 1133
Bst2BI CACGAG 2 cut(s) 91, 1133
Bst2UI CCWGG 2 cut(s) 497, 999
Bst4CI ACNGT 2 cut(s) 732, 1076
Bst6I CTCTTC 2 cut(s) 388, 1164
BstAFI CTTAAG 2 cut(s) 181, 452
BstAPI GCANNNNNTGC 1 cut(s) 580
BstBI TTCGAA 1 cut(s) 106
BstC8I GCNNGC 7 cut(s) 67, 273, 660, 698, 763, 781, 1087
BstDEI CTNAG 2 cut(s) 209, 701
BstDSI CCRYGG 2 cut(s) 807, 1072
BstENI CCTNNNNNAGG 1 cut(s) 1125
BstF5I GGATG 2 cut(s) 373, 1195
BstFNI CGCG 1 cut(s) 809
BstHHI GCGC 2 cut(s) 65, 542
BstKTI GATC 9 cut(s) 80, 223, 289, 556, 563, 601, 693, 1011, 1215
BstMBI GATC 9 cut(s) 77, 220, 286, 553, 560, 598, 690, 1008, 1212
BstMWI GCNNNNNNNGC 8 cut(s) 304, 338, 464, 580, 668, 758, 812, 1032
BstNI CCWGG 2 cut(s) 497, 999
BstNSI RCATGY 3 cut(s) 275, 724, 866
BstSCI CCNGG 2 cut(s) 495, 997
BstSFI CTRYAG 2 cut(s) 73, 113
BstSLI GKGCMC 1 cut(s) 1134
BstUI CGCG 1 cut(s) 809
BstV1I GCAGC 1 cut(s) 680
BstV2I GAAGAC 2 cut(s) 969, 1159
BstX2I RGATCY 3 cut(s) 220, 286, 598
BstYI RGATCY 3 cut(s) 220, 286, 598
BsuRI GGCC 3 cut(s) 32, 717, 806
BtgI CCRYGG 2 cut(s) 807, 1072
BtgZI GCGATG 1 cut(s) 40
BtsCI GGATG 2 cut(s) 373, 1195
BtsIMutI CAGTG 1 cut(s) 80
Cac8I GCNNGC 7 cut(s) 67, 273, 660, 698, 763, 781, 1087
CaiI CAGNNNCTG 3 cut(s) 72, 602, 998
CfoI GCGC 2 cut(s) 65, 542
Cfr13I GGNCC 3 cut(s) 30, 96, 715
Cfr42I CCGCGG 1 cut(s) 810
Csp6I GTAC 4 cut(s) 160, 469, 485, 1077
CviAII CATG 9 cut(s) 272, 280, 327, 686, 721, 863, 939, 1027, 1207
CviQI GTAC 4 cut(s) 160, 469, 485, 1077
DdeI CTNAG 2 cut(s) 209, 701
DpnI GATC 9 cut(s) 79, 222, 288, 555, 562, 600, 692, 1010, 1214
DpnII GATC 9 cut(s) 77, 220, 286, 553, 560, 598, 690, 1008, 1212
DraI TTTAAA 1 cut(s) 1096
EaeI YGGCCR 1 cut(s) 804
Eam1104I CTCTTC 2 cut(s) 388, 1164
EarI CTCTTC 2 cut(s) 388, 1164
EciI GGCGGA 1 cut(s) 473
Eco47I GGWCC 1 cut(s) 96
Eco88I CYCGRG 2 cut(s) 44, 663
EcoNI CCTNNNNNAGG 1 cut(s) 1125
EcoRII CCWGG 2 cut(s) 495, 997
EcoT22I ATGCAT 2 cut(s) 258, 726
FaeI CATG 9 cut(s) 275, 283, 330, 689, 724, 866, 942, 1030, 1210
FaqI GGGAC 1 cut(s) 1207
FatI CATG 9 cut(s) 271, 279, 326, 685, 720, 862, 938, 1026, 1206
Fnu4HI GCNGC 3 cut(s) 669, 750, 807
FokI GGATG 2 cut(s) 380, 1202
Fsp4HI GCNGC 3 cut(s) 669, 750, 807
FspBI CTAG 1 cut(s) 762
GlaI GCGC 2 cut(s) 64, 541
GluI GCNGC 3 cut(s) 669, 750, 807
GsuI CTGGAG 2 cut(s) 104, 579
HaeIII GGCC 3 cut(s) 32, 717, 806
HhaI GCGC 2 cut(s) 65, 542
Hin1II CATG 9 cut(s) 275, 283, 330, 689, 724, 866, 942, 1030, 1210
Hin6I GCGC 2 cut(s) 63, 540
HinP1I GCGC 2 cut(s) 63, 540
HinfI GANTC 6 cut(s) 137, 349, 586, 649, 882, 903
HphI GGTGA 2 cut(s) 162, 1061
Hpy188III TCNNGA 8 cut(s) 19, 46, 353, 388, 596, 602, 877, 1218
Hpy99I CGWCG 1 cut(s) 1107
HpyAV CCTTC 5 cut(s) 233, 402, 499, 905, 1024
HpyCH4III ACNGT 2 cut(s) 732, 1076
HpyCH4IV ACGT 1 cut(s) 192
HpyCH4V TGCA 9 cut(s) 115, 256, 271, 314, 583, 724, 947, 1085, 1206
HpyF10VI GCNNNNNNNGC 8 cut(s) 304, 338, 464, 580, 668, 758, 812, 1032
HpyF3I CTNAG 2 cut(s) 209, 701
HpySE526I ACGT 1 cut(s) 192
Hsp92II CATG 9 cut(s) 275, 283, 330, 689, 724, 866, 942, 1030, 1210
HspAI GCGC 2 cut(s) 63, 540
KpnI GGTACC 2 cut(s) 488, 1080
KspI CCGCGG 1 cut(s) 810
Kzo9I GATC 9 cut(s) 77, 220, 286, 553, 560, 598, 690, 1008, 1212
LmnI GCTCC 4 cut(s) 85, 477, 787, 931
Lsp1109I GCAGC 1 cut(s) 680
LweI GCATC 5 cut(s) 12, 78, 176, 252, 358
MaeI CTAG 1 cut(s) 762
MaeII ACGT 1 cut(s) 192
MaeIII GTNAC 2 cut(s) 424, 625
MalI GATC 9 cut(s) 79, 222, 288, 555, 562, 600, 692, 1010, 1214
MboI GATC 9 cut(s) 77, 220, 286, 553, 560, 598, 690, 1008, 1212
MboII GAAGA 8 cut(s) 61, 64, 405, 808, 971, 974, 1164, 1181
MfeI CAATTG 2 cut(s) 653, 791
MflI RGATCY 3 cut(s) 220, 286, 598
MhlI GDGCHC 2 cut(s) 90, 1134
MluCI AATT 6 cut(s) 56, 524, 640, 653, 791, 842
MlyI GAGTC 1 cut(s) 343
MmeI TCCRAC 3 cut(s) 660, 894, 1126
Mph1103I ATGCAT 2 cut(s) 258, 726
MseI TTAA 5 cut(s) 182, 453, 545, 1095, 1148
MslI CAYNNNNRTG 1 cut(s) 744
MspA1I CMGCKG 1 cut(s) 809
MspCI CTTAAG 2 cut(s) 181, 452
MspR9I CCNGG 2 cut(s) 497, 999
MunI CAATTG 2 cut(s) 653, 791
Mva1269I GAATGC 1 cut(s) 633
MvaI CCWGG 2 cut(s) 497, 999
MvnI CGCG 1 cut(s) 809
MwoI GCNNNNNNNGC 8 cut(s) 304, 338, 464, 580, 668, 758, 812, 1032
NdeII GATC 9 cut(s) 77, 220, 286, 553, 560, 598, 690, 1008, 1212
NheI GCTAGC 1 cut(s) 761
NlaIII CATG 9 cut(s) 275, 283, 330, 689, 724, 866, 942, 1030, 1210
NlaIV GGNNCC 3 cut(s) 222, 486, 1078
NmuCI GTSAC 2 cut(s) 424, 625
NsiI ATGCAT 2 cut(s) 258, 726
NspI RCATGY 3 cut(s) 275, 724, 866
NspV TTCGAA 1 cut(s) 106
PaeI GCATGC 1 cut(s) 275
PaeR7I CTCGAG 2 cut(s) 44, 663
PctI GAATGC 1 cut(s) 633
PfeI GAWTC 5 cut(s) 137, 586, 649, 882, 903
PfoI TCCNGGA 1 cut(s) 495
PkrI GCNGC 3 cut(s) 670, 751, 808
PleI GAGTC 1 cut(s) 343
PpsI GAGTC 1 cut(s) 343
Psp6I CCWGG 2 cut(s) 495, 997
PspGI CCWGG 2 cut(s) 495, 997
PspN4I GGNNCC 3 cut(s) 222, 486, 1078
PspPI GGNCC 3 cut(s) 30, 96, 715
PspXI VCTCGAGB 1 cut(s) 663
PstI CTGCAG 1 cut(s) 117
PstNI CAGNNNCTG 3 cut(s) 72, 602, 998
PsuI RGATCY 3 cut(s) 220, 286, 598
RsaI GTAC 4 cut(s) 161, 470, 486, 1078
RsaNI GTAC 4 cut(s) 160, 469, 485, 1077
RseI CAYNNNNRTG 1 cut(s) 744
SacII CCGCGG 1 cut(s) 810
SaqAI TTAA 5 cut(s) 182, 453, 545, 1095, 1148
SatI GCNGC 3 cut(s) 669, 750, 807
Sau3AI GATC 9 cut(s) 77, 220, 286, 553, 560, 598, 690, 1008, 1212
Sau96I GGNCC 3 cut(s) 30, 96, 715
SchI GAGTC 1 cut(s) 343
ScrFI CCNGG 2 cut(s) 497, 999
SduI GDGCHC 2 cut(s) 90, 1134
SfaNI GCATC 5 cut(s) 12, 78, 176, 252, 358
SfcI CTRYAG 2 cut(s) 73, 113
Sfr274I CTCGAG 2 cut(s) 44, 663
Sfr303I CCGCGG 1 cut(s) 810
SfuI TTCGAA 1 cut(s) 106
SgrBI CCGCGG 1 cut(s) 810
SinI GGWCC 1 cut(s) 96
SlaI CTCGAG 2 cut(s) 44, 663
SmiMI CAYNNNNRTG 1 cut(s) 744
SmlI CTYRAG 4 cut(s) 44, 181, 452, 663
SmoI CTYRAG 4 cut(s) 44, 181, 452, 663
SphI GCATGC 1 cut(s) 275
Sse9I AATT 6 cut(s) 56, 524, 640, 653, 791, 842
SsiI CCGC 4 cut(s) 458, 749, 807, 809
SspMI CTAG 1 cut(s) 762
StyD4I CCNGG 2 cut(s) 495, 997
TaaI ACNGT 2 cut(s) 732, 1076
TaiI ACGT 1 cut(s) 195
TaqI TCGA 3 cut(s) 45, 106, 664
TasI AATT 6 cut(s) 56, 524, 640, 653, 791, 842
TatI WGTACW 1 cut(s) 159
TauI GCSGC 2 cut(s) 752, 809
TfiI GAWTC 5 cut(s) 137, 586, 649, 882, 903
Tru1I TTAA 5 cut(s) 182, 453, 545, 1095, 1148
Tru9I TTAA 5 cut(s) 182, 453, 545, 1095, 1148
TscAI CASTG 1 cut(s) 87
TseFI GTSAC 2 cut(s) 424, 625
TseI GCWGC 1 cut(s) 668
Tsp45I GTSAC 2 cut(s) 424, 625
TspDTI ATGAA 4 cut(s) 150, 268, 626, 1043
TspGWI ACGGA 1 cut(s) 623
TspRI CASTG 1 cut(s) 87
Vha464I CTTAAG 2 cut(s) 181, 452
VpaK11BI GGWCC 1 cut(s) 96
XagI CCTNNNNNAGG 1 cut(s) 1125
XapI RAATTY 2 cut(s) 524, 842
XceI RCATGY 3 cut(s) 275, 724, 866
XhoI CTCGAG 2 cut(s) 44, 663
XspI CTAG 1 cut(s) 762
Zsp2I ATGCAT 2 cut(s) 258, 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.